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Genes within 1Mb (chr1:68209142:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 523941 sc-eQTL 6.68e-02 -0.093 0.0505 0.38 B L1
ENSG00000142864 SERBP1 778727 sc-eQTL 1.15e-02 -0.136 0.0535 0.38 B L1
ENSG00000116717 GADD45A 523941 sc-eQTL 4.26e-01 -0.0401 0.0502 0.38 CD4T L1
ENSG00000142864 SERBP1 778727 sc-eQTL 1.94e-01 -0.0645 0.0495 0.38 CD4T L1
ENSG00000116717 GADD45A 523941 sc-eQTL 7.26e-02 -0.0803 0.0445 0.38 CD8T L1
ENSG00000142864 SERBP1 778727 sc-eQTL 4.45e-01 -0.0359 0.0469 0.38 CD8T L1
ENSG00000116717 GADD45A 523941 sc-eQTL 6.85e-01 -0.0364 0.0897 0.387 DC L1
ENSG00000116729 WLS -23978 sc-eQTL 8.40e-01 -0.0162 0.08 0.387 DC L1
ENSG00000142864 SERBP1 778727 sc-eQTL 7.85e-01 -0.0198 0.0727 0.387 DC L1
ENSG00000116717 GADD45A 523941 sc-eQTL 8.42e-01 0.011 0.055 0.38 Mono L1
ENSG00000116729 WLS -23978 sc-eQTL 9.57e-01 -0.00391 0.0729 0.38 Mono L1
ENSG00000142864 SERBP1 778727 sc-eQTL 9.85e-01 -0.00111 0.0588 0.38 Mono L1
ENSG00000081985 IL12RB2 901778 sc-eQTL 2.68e-01 0.0639 0.0575 0.38 NK L1
ENSG00000116717 GADD45A 523941 sc-eQTL 1.62e-01 -0.0946 0.0674 0.38 NK L1
ENSG00000142864 SERBP1 778727 sc-eQTL 5.84e-01 -0.0337 0.0614 0.38 NK L1
ENSG00000024526 DEPDC1 -288079 sc-eQTL 4.97e-01 0.0288 0.0424 0.38 Other_T L1
ENSG00000081985 IL12RB2 901778 sc-eQTL 2.15e-01 0.1 0.0805 0.38 Other_T L1
ENSG00000116717 GADD45A 523941 sc-eQTL 2.98e-02 -0.118 0.0541 0.38 Other_T L1
ENSG00000142864 SERBP1 778727 sc-eQTL 4.49e-01 0.0472 0.0623 0.38 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 523941 sc-eQTL 7.40e-01 0.0304 0.0916 0.378 B_Activated L2
ENSG00000142864 SERBP1 778727 sc-eQTL 2.88e-01 -0.111 0.104 0.378 B_Activated L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.56e-01 -0.073 0.0789 0.38 B_Intermediate L2
ENSG00000142864 SERBP1 778727 sc-eQTL 9.17e-02 -0.146 0.086 0.38 B_Intermediate L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.53e-02 -0.181 0.0852 0.381 B_Memory L2
ENSG00000142864 SERBP1 778727 sc-eQTL 4.20e-01 -0.0698 0.0864 0.381 B_Memory L2
ENSG00000116717 GADD45A 523941 sc-eQTL 1.37e-01 -0.0898 0.0602 0.38 B_Naive1 L2
ENSG00000142864 SERBP1 778727 sc-eQTL 1.34e-01 -0.113 0.0749 0.38 B_Naive1 L2
ENSG00000116717 GADD45A 523941 sc-eQTL 2.20e-01 -0.109 0.0884 0.38 B_Naive2 L2
ENSG00000142864 SERBP1 778727 sc-eQTL 3.40e-01 -0.071 0.0743 0.38 B_Naive2 L2
ENSG00000116717 GADD45A 523941 sc-eQTL 9.22e-01 0.00803 0.082 0.386 CD4_CTL L2
ENSG00000142864 SERBP1 778727 sc-eQTL 4.50e-01 -0.0715 0.0946 0.386 CD4_CTL L2
ENSG00000116717 GADD45A 523941 sc-eQTL 1.79e-01 -0.0711 0.0527 0.38 CD4_Naive L2
ENSG00000142864 SERBP1 778727 sc-eQTL 1.36e-01 -0.0773 0.0517 0.38 CD4_Naive L2
ENSG00000116717 GADD45A 523941 sc-eQTL 2.66e-01 -0.0561 0.0503 0.38 CD4_TCM L2
ENSG00000142864 SERBP1 778727 sc-eQTL 6.29e-02 -0.128 0.0685 0.38 CD4_TCM L2
ENSG00000116717 GADD45A 523941 sc-eQTL 6.21e-01 0.0274 0.0555 0.38 CD4_TEM L2
ENSG00000142864 SERBP1 778727 sc-eQTL 8.97e-01 -0.0112 0.0858 0.38 CD4_TEM L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.39e-01 -0.0613 0.064 0.38 CD8_CTL L2
ENSG00000142864 SERBP1 778727 sc-eQTL 6.43e-01 0.0404 0.0872 0.38 CD8_CTL L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.22e-02 -0.115 0.0532 0.38 CD8_Naive L2
ENSG00000142864 SERBP1 778727 sc-eQTL 5.18e-01 -0.0441 0.0681 0.38 CD8_Naive L2
ENSG00000116717 GADD45A 523941 sc-eQTL 4.01e-01 -0.0525 0.0623 0.389 CD8_TCM L2
ENSG00000142864 SERBP1 778727 sc-eQTL 5.45e-01 -0.0593 0.0979 0.389 CD8_TCM L2
ENSG00000116717 GADD45A 523941 sc-eQTL 5.65e-01 -0.0428 0.0743 0.372 CD8_TEM L2
ENSG00000142864 SERBP1 778727 sc-eQTL 5.12e-01 0.0617 0.094 0.372 CD8_TEM L2
ENSG00000024526 DEPDC1 -288079 sc-eQTL 4.04e-01 0.0278 0.0333 0.379 MAIT L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 7.13e-02 0.165 0.091 0.379 MAIT L2
ENSG00000116717 GADD45A 523941 sc-eQTL 1.36e-01 -0.102 0.0684 0.379 MAIT L2
ENSG00000142864 SERBP1 778727 sc-eQTL 3.51e-01 -0.0803 0.0859 0.379 MAIT L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 3.72e-01 0.0656 0.0733 0.376 NK_CD56bright L2
ENSG00000116717 GADD45A 523941 sc-eQTL 9.35e-02 -0.142 0.0844 0.376 NK_CD56bright L2
ENSG00000142864 SERBP1 778727 sc-eQTL 7.92e-01 -0.0231 0.0875 0.376 NK_CD56bright L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 6.20e-01 0.0322 0.0647 0.379 NK_CD56dim L2
ENSG00000116717 GADD45A 523941 sc-eQTL 4.66e-01 -0.0538 0.0737 0.379 NK_CD56dim L2
ENSG00000142864 SERBP1 778727 sc-eQTL 8.22e-01 0.0158 0.0703 0.379 NK_CD56dim L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 2.88e-01 0.0669 0.0627 0.381 NK_HLA L2
ENSG00000116717 GADD45A 523941 sc-eQTL 5.23e-02 -0.179 0.0916 0.381 NK_HLA L2
ENSG00000142864 SERBP1 778727 sc-eQTL 8.13e-01 -0.02 0.0844 0.381 NK_HLA L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 8.19e-01 0.0166 0.0727 0.379 NK_cytokine L2
ENSG00000116717 GADD45A 523941 sc-eQTL 9.71e-01 -0.00287 0.0782 0.379 NK_cytokine L2
ENSG00000142864 SERBP1 778727 sc-eQTL 9.79e-01 0.00199 0.0748 0.379 NK_cytokine L2
ENSG00000116717 GADD45A 523941 sc-eQTL 2.94e-01 -0.111 0.105 0.352 PB L2
ENSG00000142864 SERBP1 778727 sc-eQTL 7.85e-01 -0.0212 0.0773 0.352 PB L2
ENSG00000024526 DEPDC1 -288079 sc-eQTL 3.80e-01 -0.0498 0.0566 0.383 Pro_T L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 9.73e-01 -0.00292 0.0849 0.383 Pro_T L2
ENSG00000116717 GADD45A 523941 sc-eQTL 7.82e-01 0.0242 0.0874 0.383 Pro_T L2
ENSG00000142864 SERBP1 778727 sc-eQTL 6.01e-01 0.0323 0.0615 0.383 Pro_T L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.37e-01 -0.0659 0.0685 0.38 Treg L2
ENSG00000142864 SERBP1 778727 sc-eQTL 7.80e-01 0.0216 0.0772 0.38 Treg L2
ENSG00000116717 GADD45A 523941 sc-eQTL 4.94e-01 -0.0666 0.0971 0.388 cDC L2
ENSG00000116729 WLS -23978 sc-eQTL 9.69e-01 0.0033 0.0836 0.388 cDC L2
ENSG00000142864 SERBP1 778727 sc-eQTL 6.33e-01 -0.0372 0.0778 0.388 cDC L2
ENSG00000116717 GADD45A 523941 sc-eQTL 9.23e-01 0.00568 0.0585 0.38 cMono_IL1B L2
ENSG00000116729 WLS -23978 sc-eQTL 6.67e-01 -0.0327 0.076 0.38 cMono_IL1B L2
ENSG00000142864 SERBP1 778727 sc-eQTL 8.73e-01 -0.0107 0.0668 0.38 cMono_IL1B L2
ENSG00000116717 GADD45A 523941 sc-eQTL 8.41e-01 0.0152 0.0758 0.38 cMono_S100A L2
ENSG00000116729 WLS -23978 sc-eQTL 7.72e-01 -0.0206 0.071 0.38 cMono_S100A L2
ENSG00000142864 SERBP1 778727 sc-eQTL 7.97e-01 0.0197 0.0764 0.38 cMono_S100A L2
ENSG00000081985 IL12RB2 901778 sc-eQTL 9.04e-01 -0.00957 0.0792 0.4 gdT L2
ENSG00000116717 GADD45A 523941 sc-eQTL 1.08e-01 -0.157 0.0972 0.4 gdT L2
ENSG00000142864 SERBP1 778727 sc-eQTL 8.38e-01 0.0237 0.116 0.4 gdT L2
ENSG00000116717 GADD45A 523941 sc-eQTL 4.26e-01 -0.0651 0.0817 0.382 intMono L2
ENSG00000116729 WLS -23978 sc-eQTL 7.44e-01 -0.0285 0.0873 0.382 intMono L2
ENSG00000142864 SERBP1 778727 sc-eQTL 5.68e-01 0.0485 0.0849 0.382 intMono L2
ENSG00000116717 GADD45A 523941 sc-eQTL 3.65e-01 -0.0813 0.0895 0.385 ncMono L2
ENSG00000116729 WLS -23978 sc-eQTL 5.14e-01 0.0537 0.0822 0.385 ncMono L2
ENSG00000142864 SERBP1 778727 sc-eQTL 1.22e-01 0.124 0.0798 0.385 ncMono L2
ENSG00000116717 GADD45A 523941 sc-eQTL 6.14e-01 0.0465 0.092 0.387 pDC L2
ENSG00000116729 WLS -23978 sc-eQTL 4.96e-01 -0.0525 0.0769 0.387 pDC L2
ENSG00000142864 SERBP1 778727 sc-eQTL 5.90e-01 0.0476 0.088 0.387 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 523941 sc-eQTL 1.91e-01 -0.0975 0.0743 0.38 B_Memory LOneK1K
ENSG00000142864 SERBP1 778727 sc-eQTL 1.49e-02 -0.191 0.0779 0.38 B_Memory LOneK1K
ENSG00000116717 GADD45A 523941 sc-eQTL 1.55e-01 -0.084 0.0589 0.38 B_Naive LOneK1K
ENSG00000142864 SERBP1 778727 sc-eQTL 1.82e-01 -0.0855 0.0639 0.38 B_Naive LOneK1K
ENSG00000116717 GADD45A 523941 sc-eQTL 6.55e-01 0.0261 0.0582 0.38 CD14_Mono LOneK1K
ENSG00000116729 WLS -23978 sc-eQTL 6.91e-01 -0.0274 0.0689 0.38 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 778727 sc-eQTL 7.76e-01 -0.0174 0.061 0.38 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 523941 sc-eQTL 1.43e-01 -0.117 0.0799 0.381 CD16_Mono LOneK1K
ENSG00000116729 WLS -23978 sc-eQTL 3.19e-01 0.0838 0.0839 0.381 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 778727 sc-eQTL 2.23e-01 0.0801 0.0655 0.381 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 901778 sc-eQTL 5.29e-01 0.039 0.0618 0.379 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 523941 sc-eQTL 2.85e-01 -0.0752 0.0702 0.379 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 778727 sc-eQTL 7.34e-01 -0.022 0.0647 0.379 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116729 WLS -23978 eQTL 0.0224 0.0553 0.0242 0.0 0.0 0.366
ENSG00000232284 GNG12-AS1 376839 eQTL 0.0271 0.0715 0.0323 0.0 0.0 0.366
ENSG00000234383 CTBP2P8 46052 eQTL 0.0243 0.0639 0.0283 0.0 0.0 0.366

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina