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Genes within 1Mb (chr1:68182171:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 496970 sc-eQTL 2.29e-01 -0.0871 0.0722 0.13 B L1
ENSG00000142864 SERBP1 751756 sc-eQTL 2.08e-01 -0.0974 0.0772 0.13 B L1
ENSG00000116717 GADD45A 496970 sc-eQTL 6.49e-01 -0.0325 0.0714 0.13 CD4T L1
ENSG00000142864 SERBP1 751756 sc-eQTL 4.39e-01 -0.0546 0.0704 0.13 CD4T L1
ENSG00000116717 GADD45A 496970 sc-eQTL 8.92e-02 -0.108 0.0633 0.13 CD8T L1
ENSG00000142864 SERBP1 751756 sc-eQTL 7.37e-01 -0.0225 0.0668 0.13 CD8T L1
ENSG00000116717 GADD45A 496970 sc-eQTL 7.69e-01 0.0374 0.127 0.131 DC L1
ENSG00000116729 WLS -50949 sc-eQTL 2.47e-01 -0.131 0.113 0.131 DC L1
ENSG00000142864 SERBP1 751756 sc-eQTL 6.20e-01 0.0511 0.103 0.131 DC L1
ENSG00000116717 GADD45A 496970 sc-eQTL 3.81e-01 -0.0695 0.0791 0.13 Mono L1
ENSG00000116729 WLS -50949 sc-eQTL 5.98e-01 0.0554 0.105 0.13 Mono L1
ENSG00000142864 SERBP1 751756 sc-eQTL 2.59e-01 -0.0955 0.0844 0.13 Mono L1
ENSG00000081985 IL12RB2 874807 sc-eQTL 7.05e-01 -0.0309 0.0813 0.131 NK L1
ENSG00000116717 GADD45A 496970 sc-eQTL 8.36e-01 -0.0197 0.0954 0.131 NK L1
ENSG00000142864 SERBP1 751756 sc-eQTL 9.60e-02 0.144 0.0861 0.131 NK L1
ENSG00000024526 DEPDC1 -315050 sc-eQTL 5.00e-01 0.0412 0.061 0.13 Other_T L1
ENSG00000081985 IL12RB2 874807 sc-eQTL 1.75e-01 -0.158 0.116 0.13 Other_T L1
ENSG00000116717 GADD45A 496970 sc-eQTL 9.54e-01 0.00453 0.0787 0.13 Other_T L1
ENSG00000142864 SERBP1 751756 sc-eQTL 5.64e-01 0.0518 0.0897 0.13 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 496970 sc-eQTL 8.54e-01 -0.0255 0.139 0.128 B_Activated L2
ENSG00000142864 SERBP1 751756 sc-eQTL 3.63e-01 0.144 0.158 0.128 B_Activated L2
ENSG00000116717 GADD45A 496970 sc-eQTL 3.72e-01 -0.1 0.112 0.131 B_Intermediate L2
ENSG00000142864 SERBP1 751756 sc-eQTL 5.74e-01 -0.069 0.123 0.131 B_Intermediate L2
ENSG00000116717 GADD45A 496970 sc-eQTL 8.63e-01 -0.0215 0.125 0.129 B_Memory L2
ENSG00000142864 SERBP1 751756 sc-eQTL 8.27e-02 -0.217 0.124 0.129 B_Memory L2
ENSG00000116717 GADD45A 496970 sc-eQTL 6.23e-01 -0.0422 0.0858 0.13 B_Naive1 L2
ENSG00000142864 SERBP1 751756 sc-eQTL 3.62e-01 -0.0974 0.107 0.13 B_Naive1 L2
ENSG00000116717 GADD45A 496970 sc-eQTL 7.69e-02 -0.222 0.125 0.131 B_Naive2 L2
ENSG00000142864 SERBP1 751756 sc-eQTL 6.96e-01 -0.0412 0.105 0.131 B_Naive2 L2
ENSG00000116717 GADD45A 496970 sc-eQTL 4.57e-01 0.0863 0.116 0.125 CD4_CTL L2
ENSG00000142864 SERBP1 751756 sc-eQTL 2.92e-01 -0.141 0.134 0.125 CD4_CTL L2
ENSG00000116717 GADD45A 496970 sc-eQTL 8.95e-01 -0.01 0.0756 0.13 CD4_Naive L2
ENSG00000142864 SERBP1 751756 sc-eQTL 6.65e-01 -0.0321 0.0742 0.13 CD4_Naive L2
ENSG00000116717 GADD45A 496970 sc-eQTL 2.52e-01 -0.0819 0.0714 0.13 CD4_TCM L2
ENSG00000142864 SERBP1 751756 sc-eQTL 8.81e-01 0.0147 0.0979 0.13 CD4_TCM L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.63e-01 0.0463 0.08 0.13 CD4_TEM L2
ENSG00000142864 SERBP1 751756 sc-eQTL 4.26e-01 -0.0986 0.124 0.13 CD4_TEM L2
ENSG00000116717 GADD45A 496970 sc-eQTL 2.71e-01 -0.0994 0.0901 0.13 CD8_CTL L2
ENSG00000142864 SERBP1 751756 sc-eQTL 5.09e-01 0.0813 0.123 0.13 CD8_CTL L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.68e-01 -0.0436 0.0762 0.13 CD8_Naive L2
ENSG00000142864 SERBP1 751756 sc-eQTL 7.96e-01 -0.025 0.0966 0.13 CD8_Naive L2
ENSG00000116717 GADD45A 496970 sc-eQTL 2.91e-03 -0.26 0.0861 0.13 CD8_TCM L2
ENSG00000142864 SERBP1 751756 sc-eQTL 2.89e-01 -0.147 0.138 0.13 CD8_TCM L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.71e-01 -0.0613 0.108 0.128 CD8_TEM L2
ENSG00000142864 SERBP1 751756 sc-eQTL 6.59e-01 0.0605 0.137 0.128 CD8_TEM L2
ENSG00000024526 DEPDC1 -315050 sc-eQTL 8.20e-01 0.0111 0.0485 0.128 MAIT L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 4.96e-02 -0.261 0.132 0.128 MAIT L2
ENSG00000116717 GADD45A 496970 sc-eQTL 9.12e-01 0.0111 0.1 0.128 MAIT L2
ENSG00000142864 SERBP1 751756 sc-eQTL 9.70e-01 0.00477 0.125 0.128 MAIT L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 7.18e-01 -0.0367 0.101 0.133 NK_CD56bright L2
ENSG00000116717 GADD45A 496970 sc-eQTL 7.78e-01 -0.033 0.117 0.133 NK_CD56bright L2
ENSG00000142864 SERBP1 751756 sc-eQTL 1.03e-01 0.197 0.12 0.133 NK_CD56bright L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 5.42e-01 -0.0551 0.0902 0.131 NK_CD56dim L2
ENSG00000116717 GADD45A 496970 sc-eQTL 8.76e-01 0.0161 0.103 0.131 NK_CD56dim L2
ENSG00000142864 SERBP1 751756 sc-eQTL 6.03e-02 0.184 0.0972 0.131 NK_CD56dim L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 2.70e-01 0.0962 0.0869 0.132 NK_HLA L2
ENSG00000116717 GADD45A 496970 sc-eQTL 7.99e-01 -0.0326 0.128 0.132 NK_HLA L2
ENSG00000142864 SERBP1 751756 sc-eQTL 5.55e-01 0.0692 0.117 0.132 NK_HLA L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 9.80e-01 -0.00256 0.103 0.131 NK_cytokine L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.65e-01 -0.0636 0.11 0.131 NK_cytokine L2
ENSG00000142864 SERBP1 751756 sc-eQTL 9.46e-01 -0.00718 0.105 0.131 NK_cytokine L2
ENSG00000116717 GADD45A 496970 sc-eQTL 6.06e-01 -0.0822 0.159 0.115 PB L2
ENSG00000142864 SERBP1 751756 sc-eQTL 1.06e-01 0.188 0.115 0.115 PB L2
ENSG00000024526 DEPDC1 -315050 sc-eQTL 2.97e-01 0.0841 0.0805 0.13 Pro_T L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 9.78e-01 -0.00332 0.121 0.13 Pro_T L2
ENSG00000116717 GADD45A 496970 sc-eQTL 3.04e-01 -0.128 0.124 0.13 Pro_T L2
ENSG00000142864 SERBP1 751756 sc-eQTL 2.20e-02 0.2 0.0865 0.13 Pro_T L2
ENSG00000116717 GADD45A 496970 sc-eQTL 9.73e-01 0.00336 0.099 0.13 Treg L2
ENSG00000142864 SERBP1 751756 sc-eQTL 1.05e-01 0.18 0.111 0.13 Treg L2
ENSG00000116717 GADD45A 496970 sc-eQTL 6.07e-01 0.0727 0.141 0.132 cDC L2
ENSG00000116729 WLS -50949 sc-eQTL 9.95e-01 0.000751 0.121 0.132 cDC L2
ENSG00000142864 SERBP1 751756 sc-eQTL 3.35e-01 0.109 0.113 0.132 cDC L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.27e-01 -0.0534 0.0842 0.13 cMono_IL1B L2
ENSG00000116729 WLS -50949 sc-eQTL 6.71e-01 0.0466 0.109 0.13 cMono_IL1B L2
ENSG00000142864 SERBP1 751756 sc-eQTL 6.05e-01 -0.0498 0.0962 0.13 cMono_IL1B L2
ENSG00000116717 GADD45A 496970 sc-eQTL 8.29e-01 0.0237 0.109 0.13 cMono_S100A L2
ENSG00000116729 WLS -50949 sc-eQTL 8.10e-01 0.0248 0.103 0.13 cMono_S100A L2
ENSG00000142864 SERBP1 751756 sc-eQTL 7.42e-01 -0.0364 0.11 0.13 cMono_S100A L2
ENSG00000081985 IL12RB2 874807 sc-eQTL 8.75e-01 -0.0182 0.116 0.133 gdT L2
ENSG00000116717 GADD45A 496970 sc-eQTL 8.99e-01 -0.0183 0.143 0.133 gdT L2
ENSG00000142864 SERBP1 751756 sc-eQTL 3.34e-01 0.164 0.169 0.133 gdT L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.59e-01 -0.0689 0.118 0.133 intMono L2
ENSG00000116729 WLS -50949 sc-eQTL 8.09e-02 0.219 0.125 0.133 intMono L2
ENSG00000142864 SERBP1 751756 sc-eQTL 5.50e-01 -0.0731 0.122 0.133 intMono L2
ENSG00000116717 GADD45A 496970 sc-eQTL 1.72e-01 -0.174 0.127 0.129 ncMono L2
ENSG00000116729 WLS -50949 sc-eQTL 7.62e-01 0.0354 0.117 0.129 ncMono L2
ENSG00000142864 SERBP1 751756 sc-eQTL 2.72e-02 -0.25 0.112 0.129 ncMono L2
ENSG00000116717 GADD45A 496970 sc-eQTL 5.57e-01 0.0782 0.133 0.127 pDC L2
ENSG00000116729 WLS -50949 sc-eQTL 3.05e-01 -0.114 0.111 0.127 pDC L2
ENSG00000142864 SERBP1 751756 sc-eQTL 4.95e-01 -0.0869 0.127 0.127 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 496970 sc-eQTL 4.44e-01 -0.0817 0.107 0.13 B_Memory LOneK1K
ENSG00000142864 SERBP1 751756 sc-eQTL 6.33e-01 -0.0539 0.113 0.13 B_Memory LOneK1K
ENSG00000116717 GADD45A 496970 sc-eQTL 2.65e-01 -0.094 0.0842 0.13 B_Naive LOneK1K
ENSG00000142864 SERBP1 751756 sc-eQTL 3.47e-01 -0.086 0.0914 0.13 B_Naive LOneK1K
ENSG00000116717 GADD45A 496970 sc-eQTL 4.86e-01 -0.0588 0.0842 0.13 CD14_Mono LOneK1K
ENSG00000116729 WLS -50949 sc-eQTL 6.44e-01 0.0461 0.0996 0.13 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 751756 sc-eQTL 5.13e-01 -0.0578 0.0882 0.13 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 496970 sc-eQTL 2.47e-01 -0.134 0.116 0.131 CD16_Mono LOneK1K
ENSG00000116729 WLS -50949 sc-eQTL 2.21e-01 0.149 0.121 0.131 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 751756 sc-eQTL 1.14e-02 -0.239 0.0936 0.131 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 874807 sc-eQTL 6.61e-01 -0.0381 0.0869 0.131 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 496970 sc-eQTL 7.41e-01 -0.0327 0.0989 0.131 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 751756 sc-eQTL 2.54e-01 0.104 0.0907 0.131 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116729 WLS -50949 eQTL 1.3e-06 -0.196 0.0402 0.0 0.0 0.0957
ENSG00000232284 GNG12-AS1 349868 eQTL 0.0139 -0.134 0.0542 0.0 0.0 0.0957
ENSG00000234383 CTBP2P8 19081 eQTL 0.0183 -0.112 0.0475 0.0 0.0 0.0957

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116729 WLS -50949 8.31e-06 9.91e-06 1.56e-06 6.04e-06 2.38e-06 4.25e-06 1.09e-05 2.18e-06 9.91e-06 5.51e-06 1.24e-05 5.61e-06 1.62e-05 3.63e-06 3.01e-06 6.6e-06 4.62e-06 7.71e-06 2.98e-06 2.89e-06 5.97e-06 9.92e-06 8.83e-06 3.39e-06 1.52e-05 4.49e-06 5.47e-06 4.77e-06 1.12e-05 9.15e-06 5.65e-06 1.08e-06 1.19e-06 3.59e-06 4.62e-06 2.79e-06 1.79e-06 1.93e-06 2.04e-06 1.18e-06 1.12e-06 1.3e-05 1.4e-06 2.36e-07 8.1e-07 1.74e-06 1.79e-06 7.73e-07 4.74e-07
ENSG00000232284 GNG12-AS1 349868 1.13e-06 8.97e-07 1.63e-07 3.71e-07 1.77e-07 3.36e-07 7.1e-07 2.73e-07 8.61e-07 2.72e-07 1.09e-06 5.55e-07 1.3e-06 2.08e-07 4.05e-07 4.91e-07 6.15e-07 4.95e-07 3.5e-07 4.19e-07 2.57e-07 5.86e-07 5.49e-07 3.56e-07 1.49e-06 2.4e-07 5.04e-07 5.31e-07 6.84e-07 8.36e-07 4.39e-07 3.85e-08 1.34e-07 2.29e-07 3.29e-07 3.05e-07 2.59e-07 1.21e-07 1.14e-07 9.61e-09 2.32e-07 1.02e-06 5.03e-08 1.24e-08 1.89e-07 6.01e-08 1.58e-07 8.25e-08 5.62e-08