logo

Genes within 1Mb (chr1:68124546:TC:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 439345 sc-eQTL 6.43e-01 -0.0307 0.066 0.19 B L1
ENSG00000142864 SERBP1 694131 sc-eQTL 8.92e-01 0.00962 0.0706 0.19 B L1
ENSG00000116717 GADD45A 439345 sc-eQTL 9.37e-01 -0.00517 0.0653 0.19 CD4T L1
ENSG00000142864 SERBP1 694131 sc-eQTL 5.45e-01 0.0391 0.0644 0.19 CD4T L1
ENSG00000116717 GADD45A 439345 sc-eQTL 8.52e-01 -0.0107 0.0576 0.19 CD8T L1
ENSG00000142864 SERBP1 694131 sc-eQTL 3.96e-01 -0.0513 0.0603 0.19 CD8T L1
ENSG00000116717 GADD45A 439345 sc-eQTL 9.26e-01 -0.0108 0.116 0.191 DC L1
ENSG00000116729 WLS -108574 sc-eQTL 7.63e-01 0.0311 0.103 0.191 DC L1
ENSG00000142864 SERBP1 694131 sc-eQTL 9.52e-01 -0.0056 0.0936 0.191 DC L1
ENSG00000116717 GADD45A 439345 sc-eQTL 5.91e-01 -0.039 0.0726 0.19 Mono L1
ENSG00000116729 WLS -108574 sc-eQTL 3.67e-02 0.2 0.0952 0.19 Mono L1
ENSG00000142864 SERBP1 694131 sc-eQTL 4.22e-01 0.0623 0.0775 0.19 Mono L1
ENSG00000081985 IL12RB2 817182 sc-eQTL 9.74e-01 0.0024 0.0749 0.191 NK L1
ENSG00000116717 GADD45A 439345 sc-eQTL 8.62e-01 0.0153 0.0878 0.191 NK L1
ENSG00000142864 SERBP1 694131 sc-eQTL 4.21e-01 0.0642 0.0797 0.191 NK L1
ENSG00000024526 DEPDC1 -372675 sc-eQTL 6.12e-01 0.0282 0.0555 0.19 Other_T L1
ENSG00000081985 IL12RB2 817182 sc-eQTL 3.53e-01 0.0981 0.105 0.19 Other_T L1
ENSG00000116717 GADD45A 439345 sc-eQTL 8.12e-01 0.0171 0.0716 0.19 Other_T L1
ENSG00000142864 SERBP1 694131 sc-eQTL 6.45e-01 -0.0376 0.0815 0.19 Other_T L1
ENSG00000162594 IL23R 985639 sc-eQTL 5.48e-01 0.0428 0.0712 0.19 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 439345 sc-eQTL 3.55e-01 -0.113 0.122 0.186 B_Activated L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.33e-01 -0.166 0.139 0.186 B_Activated L2
ENSG00000116717 GADD45A 439345 sc-eQTL 6.94e-01 0.0398 0.101 0.191 B_Intermediate L2
ENSG00000142864 SERBP1 694131 sc-eQTL 9.77e-01 0.00317 0.111 0.191 B_Intermediate L2
ENSG00000116717 GADD45A 439345 sc-eQTL 4.55e-02 0.218 0.108 0.192 B_Memory L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.09e-02 0.252 0.108 0.192 B_Memory L2
ENSG00000116717 GADD45A 439345 sc-eQTL 5.54e-01 -0.0463 0.0781 0.19 B_Naive1 L2
ENSG00000142864 SERBP1 694131 sc-eQTL 8.09e-02 -0.169 0.0965 0.19 B_Naive1 L2
ENSG00000116717 GADD45A 439345 sc-eQTL 9.54e-01 -0.00651 0.114 0.191 B_Naive2 L2
ENSG00000142864 SERBP1 694131 sc-eQTL 9.56e-01 0.00522 0.0954 0.191 B_Naive2 L2
ENSG00000116717 GADD45A 439345 sc-eQTL 8.91e-01 0.014 0.102 0.195 CD4_CTL L2
ENSG00000142864 SERBP1 694131 sc-eQTL 7.41e-01 -0.0391 0.118 0.195 CD4_CTL L2
ENSG00000116717 GADD45A 439345 sc-eQTL 7.92e-01 0.0183 0.0692 0.19 CD4_Naive L2
ENSG00000142864 SERBP1 694131 sc-eQTL 1.60e-01 0.0954 0.0676 0.19 CD4_Naive L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.94e-01 0.0553 0.0648 0.19 CD4_TCM L2
ENSG00000142864 SERBP1 694131 sc-eQTL 9.13e-01 0.00968 0.0888 0.19 CD4_TCM L2
ENSG00000116717 GADD45A 439345 sc-eQTL 5.06e-01 -0.0481 0.0722 0.19 CD4_TEM L2
ENSG00000142864 SERBP1 694131 sc-eQTL 3.34e-02 -0.237 0.111 0.19 CD4_TEM L2
ENSG00000116717 GADD45A 439345 sc-eQTL 1.14e-01 0.128 0.0808 0.19 CD8_CTL L2
ENSG00000142864 SERBP1 694131 sc-eQTL 7.50e-03 -0.294 0.109 0.19 CD8_CTL L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.01e-01 -0.0714 0.0689 0.19 CD8_Naive L2
ENSG00000142864 SERBP1 694131 sc-eQTL 3.72e-01 -0.0781 0.0873 0.19 CD8_Naive L2
ENSG00000116717 GADD45A 439345 sc-eQTL 9.08e-01 0.00953 0.0819 0.192 CD8_TCM L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.60e-01 -0.145 0.128 0.192 CD8_TCM L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.17e-01 -0.0972 0.0967 0.185 CD8_TEM L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.51e-02 -0.273 0.121 0.185 CD8_TEM L2
ENSG00000024526 DEPDC1 -372675 sc-eQTL 1.54e-01 -0.0614 0.0429 0.193 MAIT L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 1.01e-01 0.194 0.118 0.193 MAIT L2
ENSG00000116717 GADD45A 439345 sc-eQTL 9.01e-01 0.0111 0.089 0.193 MAIT L2
ENSG00000142864 SERBP1 694131 sc-eQTL 6.70e-01 0.0475 0.111 0.193 MAIT L2
ENSG00000162594 IL23R 985639 sc-eQTL 6.95e-01 0.0346 0.0881 0.193 MAIT L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 5.90e-01 -0.0492 0.0911 0.193 NK_CD56bright L2
ENSG00000116717 GADD45A 439345 sc-eQTL 9.76e-01 -0.00318 0.106 0.193 NK_CD56bright L2
ENSG00000142864 SERBP1 694131 sc-eQTL 3.09e-02 0.234 0.107 0.193 NK_CD56bright L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 9.31e-01 0.00717 0.0833 0.19 NK_CD56dim L2
ENSG00000116717 GADD45A 439345 sc-eQTL 7.21e-01 -0.0339 0.0949 0.19 NK_CD56dim L2
ENSG00000142864 SERBP1 694131 sc-eQTL 5.02e-01 0.0608 0.0904 0.19 NK_CD56dim L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 4.56e-01 0.0589 0.0788 0.185 NK_HLA L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.84e-01 0.101 0.116 0.185 NK_HLA L2
ENSG00000142864 SERBP1 694131 sc-eQTL 5.78e-01 0.059 0.106 0.185 NK_HLA L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 7.39e-01 0.031 0.0931 0.19 NK_cytokine L2
ENSG00000116717 GADD45A 439345 sc-eQTL 1.94e-01 0.13 0.0998 0.19 NK_cytokine L2
ENSG00000142864 SERBP1 694131 sc-eQTL 4.58e-01 -0.0712 0.0957 0.19 NK_cytokine L2
ENSG00000116717 GADD45A 439345 sc-eQTL 7.21e-01 -0.0465 0.13 0.196 PB L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.47e-01 0.11 0.0948 0.196 PB L2
ENSG00000024526 DEPDC1 -372675 sc-eQTL 5.90e-01 0.0386 0.0715 0.191 Pro_T L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 5.36e-01 0.0664 0.107 0.191 Pro_T L2
ENSG00000116717 GADD45A 439345 sc-eQTL 9.59e-01 -0.00563 0.11 0.191 Pro_T L2
ENSG00000142864 SERBP1 694131 sc-eQTL 3.21e-01 0.0771 0.0775 0.191 Pro_T L2
ENSG00000162594 IL23R 985639 sc-eQTL 8.22e-01 0.0169 0.075 0.191 Pro_T L2
ENSG00000116717 GADD45A 439345 sc-eQTL 6.99e-01 0.0348 0.0898 0.19 Treg L2
ENSG00000142864 SERBP1 694131 sc-eQTL 8.73e-02 -0.172 0.1 0.19 Treg L2
ENSG00000116717 GADD45A 439345 sc-eQTL 5.90e-01 -0.0673 0.125 0.19 cDC L2
ENSG00000116729 WLS -108574 sc-eQTL 4.07e-01 -0.0889 0.107 0.19 cDC L2
ENSG00000142864 SERBP1 694131 sc-eQTL 9.37e-01 -0.00788 0.0998 0.19 cDC L2
ENSG00000116717 GADD45A 439345 sc-eQTL 4.64e-01 -0.0567 0.0772 0.19 cMono_IL1B L2
ENSG00000116729 WLS -108574 sc-eQTL 1.93e-02 0.234 0.0992 0.19 cMono_IL1B L2
ENSG00000142864 SERBP1 694131 sc-eQTL 6.30e-01 0.0425 0.0883 0.19 cMono_IL1B L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.17e-02 -0.213 0.0983 0.19 cMono_S100A L2
ENSG00000116729 WLS -108574 sc-eQTL 3.96e-01 0.0791 0.0929 0.19 cMono_S100A L2
ENSG00000142864 SERBP1 694131 sc-eQTL 4.91e-01 -0.069 0.1 0.19 cMono_S100A L2
ENSG00000081985 IL12RB2 817182 sc-eQTL 9.16e-01 0.0116 0.11 0.182 gdT L2
ENSG00000116717 GADD45A 439345 sc-eQTL 1.69e-02 0.322 0.133 0.182 gdT L2
ENSG00000142864 SERBP1 694131 sc-eQTL 8.50e-02 -0.276 0.159 0.182 gdT L2
ENSG00000162594 IL23R 985639 sc-eQTL 9.15e-01 0.0147 0.136 0.182 gdT L2
ENSG00000116717 GADD45A 439345 sc-eQTL 3.25e-01 0.106 0.107 0.184 intMono L2
ENSG00000116729 WLS -108574 sc-eQTL 5.25e-01 0.0728 0.114 0.184 intMono L2
ENSG00000142864 SERBP1 694131 sc-eQTL 8.97e-01 -0.0145 0.111 0.184 intMono L2
ENSG00000116717 GADD45A 439345 sc-eQTL 1.06e-01 0.183 0.113 0.192 ncMono L2
ENSG00000116729 WLS -108574 sc-eQTL 1.00e+00 -8.13e-06 0.104 0.192 ncMono L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.75e-01 0.111 0.101 0.192 ncMono L2
ENSG00000116717 GADD45A 439345 sc-eQTL 2.27e-01 -0.148 0.122 0.189 pDC L2
ENSG00000116729 WLS -108574 sc-eQTL 3.56e-01 0.0944 0.102 0.189 pDC L2
ENSG00000142864 SERBP1 694131 sc-eQTL 2.56e-01 0.133 0.116 0.189 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 439345 sc-eQTL 7.88e-01 0.0262 0.0973 0.19 B_Memory LOneK1K
ENSG00000142864 SERBP1 694131 sc-eQTL 2.03e-01 0.131 0.103 0.19 B_Memory LOneK1K
ENSG00000116717 GADD45A 439345 sc-eQTL 4.28e-01 -0.0609 0.0766 0.19 B_Naive LOneK1K
ENSG00000142864 SERBP1 694131 sc-eQTL 2.54e-01 -0.0949 0.083 0.19 B_Naive LOneK1K
ENSG00000116717 GADD45A 439345 sc-eQTL 1.21e-01 -0.12 0.0771 0.19 CD14_Mono LOneK1K
ENSG00000116729 WLS -108574 sc-eQTL 4.22e-02 0.186 0.0908 0.19 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 694131 sc-eQTL 6.98e-01 0.0315 0.0812 0.19 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 439345 sc-eQTL 4.71e-02 0.211 0.106 0.19 CD16_Mono LOneK1K
ENSG00000116729 WLS -108574 sc-eQTL 4.99e-01 0.0756 0.112 0.19 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 694131 sc-eQTL 6.73e-01 0.0369 0.0873 0.19 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 817182 sc-eQTL 6.99e-01 0.0309 0.0799 0.19 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 439345 sc-eQTL 7.01e-01 0.0349 0.0909 0.19 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 694131 sc-eQTL 8.45e-01 0.0164 0.0837 0.19 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116729 WLS -108574 eQTL 0.0183 -0.0723 0.0306 0.0 0.0 0.186
ENSG00000234383 CTBP2P8 -38544 eQTL 0.114 0.0568 0.0359 0.00257 0.0 0.186

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000232284 \N 292243 1.31e-06 9.59e-07 5.15e-07 1.28e-06 1.09e-07 6.06e-07 1.2e-06 2.06e-07 1.2e-06 2.85e-07 1.39e-06 5.93e-07 1.68e-06 2.98e-07 4.16e-07 3.96e-07 8.26e-07 4.52e-07 4.82e-07 6.16e-08 2.39e-07 1.36e-06 4.96e-07 1.19e-07 2.05e-06 2.48e-07 7.97e-07 1.97e-07 6.85e-07 1.22e-06 6.29e-07 3.98e-08 3.59e-08 1.93e-07 4.05e-07 6.18e-08 7.52e-08 8.61e-08 5.77e-08 7.55e-08 4e-08 1.62e-06 9.48e-08 4.29e-07 9.79e-08 4.57e-08 9.34e-08 3.81e-09 4.91e-08