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Genes within 1Mb (chr1:68111137:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 425936 sc-eQTL 4.75e-01 -0.0384 0.0536 0.65 B L1
ENSG00000142864 SERBP1 680722 sc-eQTL 6.40e-01 -0.0269 0.0573 0.65 B L1
ENSG00000116717 GADD45A 425936 sc-eQTL 5.15e-02 0.0996 0.0509 0.65 CD4T L1
ENSG00000142864 SERBP1 680722 sc-eQTL 8.30e-01 0.0109 0.0507 0.65 CD4T L1
ENSG00000116717 GADD45A 425936 sc-eQTL 2.47e-01 0.053 0.0456 0.65 CD8T L1
ENSG00000142864 SERBP1 680722 sc-eQTL 9.20e-01 -0.00479 0.048 0.65 CD8T L1
ENSG00000116717 GADD45A 425936 sc-eQTL 7.29e-01 0.0323 0.0931 0.651 DC L1
ENSG00000116729 WLS -121983 sc-eQTL 9.18e-01 0.00861 0.083 0.651 DC L1
ENSG00000142864 SERBP1 680722 sc-eQTL 9.60e-01 -0.00377 0.0755 0.651 DC L1
ENSG00000116717 GADD45A 425936 sc-eQTL 9.96e-01 -0.000292 0.057 0.65 Mono L1
ENSG00000116729 WLS -121983 sc-eQTL 2.11e-02 0.173 0.0745 0.65 Mono L1
ENSG00000142864 SERBP1 680722 sc-eQTL 6.96e-02 -0.11 0.0604 0.65 Mono L1
ENSG00000081985 IL12RB2 803773 sc-eQTL 7.54e-01 -0.0184 0.0586 0.65 NK L1
ENSG00000116717 GADD45A 425936 sc-eQTL 7.99e-01 0.0176 0.0688 0.65 NK L1
ENSG00000142864 SERBP1 680722 sc-eQTL 2.66e-01 -0.0695 0.0623 0.65 NK L1
ENSG00000024526 DEPDC1 -386084 sc-eQTL 3.78e-02 0.0883 0.0423 0.65 Other_T L1
ENSG00000081985 IL12RB2 803773 sc-eQTL 4.80e-01 0.0575 0.0812 0.65 Other_T L1
ENSG00000116717 GADD45A 425936 sc-eQTL 9.30e-01 -0.00486 0.0551 0.65 Other_T L1
ENSG00000142864 SERBP1 680722 sc-eQTL 4.66e-01 0.0458 0.0627 0.65 Other_T L1
ENSG00000162594 IL23R 972230 sc-eQTL 6.59e-01 0.0242 0.0548 0.65 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 425936 sc-eQTL 3.48e-01 0.0859 0.0914 0.633 B_Activated L2
ENSG00000142864 SERBP1 680722 sc-eQTL 3.67e-01 -0.0943 0.104 0.633 B_Activated L2
ENSG00000116717 GADD45A 425936 sc-eQTL 4.14e-01 -0.0647 0.0791 0.648 B_Intermediate L2
ENSG00000142864 SERBP1 680722 sc-eQTL 2.94e-01 -0.0911 0.0866 0.648 B_Intermediate L2
ENSG00000116717 GADD45A 425936 sc-eQTL 8.96e-01 -0.0113 0.0861 0.649 B_Memory L2
ENSG00000142864 SERBP1 680722 sc-eQTL 7.90e-02 -0.152 0.0858 0.649 B_Memory L2
ENSG00000116717 GADD45A 425936 sc-eQTL 7.81e-01 -0.0171 0.0612 0.65 B_Naive1 L2
ENSG00000142864 SERBP1 680722 sc-eQTL 6.63e-01 0.0332 0.0762 0.65 B_Naive1 L2
ENSG00000116717 GADD45A 425936 sc-eQTL 9.17e-01 -0.00931 0.0896 0.65 B_Naive2 L2
ENSG00000142864 SERBP1 680722 sc-eQTL 3.69e-01 -0.0676 0.0751 0.65 B_Naive2 L2
ENSG00000116717 GADD45A 425936 sc-eQTL 9.30e-01 0.00711 0.0813 0.652 CD4_CTL L2
ENSG00000142864 SERBP1 680722 sc-eQTL 4.52e-01 -0.0706 0.0937 0.652 CD4_CTL L2
ENSG00000116717 GADD45A 425936 sc-eQTL 1.99e-02 0.125 0.0532 0.65 CD4_Naive L2
ENSG00000142864 SERBP1 680722 sc-eQTL 6.26e-01 0.0258 0.0529 0.65 CD4_Naive L2
ENSG00000116717 GADD45A 425936 sc-eQTL 7.60e-01 0.0157 0.0514 0.65 CD4_TCM L2
ENSG00000142864 SERBP1 680722 sc-eQTL 9.45e-01 0.00489 0.0703 0.65 CD4_TCM L2
ENSG00000116717 GADD45A 425936 sc-eQTL 5.84e-02 0.106 0.0559 0.65 CD4_TEM L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.67e-02 -0.166 0.0864 0.65 CD4_TEM L2
ENSG00000116717 GADD45A 425936 sc-eQTL 3.90e-01 0.0553 0.0643 0.65 CD8_CTL L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.27e-02 -0.169 0.0868 0.65 CD8_CTL L2
ENSG00000116717 GADD45A 425936 sc-eQTL 4.44e-01 0.0419 0.0546 0.65 CD8_Naive L2
ENSG00000142864 SERBP1 680722 sc-eQTL 8.71e-01 0.0113 0.0692 0.65 CD8_Naive L2
ENSG00000116717 GADD45A 425936 sc-eQTL 1.32e-02 0.155 0.062 0.66 CD8_TCM L2
ENSG00000142864 SERBP1 680722 sc-eQTL 7.78e-01 0.028 0.099 0.66 CD8_TCM L2
ENSG00000116717 GADD45A 425936 sc-eQTL 1.43e-01 -0.11 0.0745 0.644 CD8_TEM L2
ENSG00000142864 SERBP1 680722 sc-eQTL 1.66e-01 -0.131 0.0942 0.644 CD8_TEM L2
ENSG00000024526 DEPDC1 -386084 sc-eQTL 6.03e-01 0.0171 0.0329 0.652 MAIT L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 4.59e-01 0.0671 0.0904 0.652 MAIT L2
ENSG00000116717 GADD45A 425936 sc-eQTL 2.28e-01 0.0818 0.0677 0.652 MAIT L2
ENSG00000142864 SERBP1 680722 sc-eQTL 7.92e-01 0.0225 0.085 0.652 MAIT L2
ENSG00000162594 IL23R 972230 sc-eQTL 6.23e-01 0.0331 0.0672 0.652 MAIT L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 6.88e-01 0.0294 0.0733 0.647 NK_CD56bright L2
ENSG00000116717 GADD45A 425936 sc-eQTL 9.44e-01 0.006 0.0848 0.647 NK_CD56bright L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.33e-01 0.0546 0.0873 0.647 NK_CD56bright L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 5.27e-01 -0.0411 0.0649 0.651 NK_CD56dim L2
ENSG00000116717 GADD45A 425936 sc-eQTL 3.38e-01 0.0708 0.0738 0.651 NK_CD56dim L2
ENSG00000142864 SERBP1 680722 sc-eQTL 2.30e-01 -0.0845 0.0702 0.651 NK_CD56dim L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 5.02e-01 -0.0411 0.061 0.642 NK_HLA L2
ENSG00000116717 GADD45A 425936 sc-eQTL 5.82e-01 -0.0494 0.0897 0.642 NK_HLA L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.79e-01 -0.0455 0.0819 0.642 NK_HLA L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 7.19e-01 -0.0264 0.0732 0.651 NK_cytokine L2
ENSG00000116717 GADD45A 425936 sc-eQTL 7.81e-01 -0.0219 0.0787 0.651 NK_cytokine L2
ENSG00000142864 SERBP1 680722 sc-eQTL 9.64e-01 0.00343 0.0754 0.651 NK_cytokine L2
ENSG00000116717 GADD45A 425936 sc-eQTL 3.17e-01 -0.107 0.107 0.659 PB L2
ENSG00000142864 SERBP1 680722 sc-eQTL 8.60e-01 -0.0139 0.0786 0.659 PB L2
ENSG00000024526 DEPDC1 -386084 sc-eQTL 1.15e-01 0.0891 0.0563 0.648 Pro_T L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 3.30e-01 0.0826 0.0847 0.648 Pro_T L2
ENSG00000116717 GADD45A 425936 sc-eQTL 2.46e-02 -0.195 0.0863 0.648 Pro_T L2
ENSG00000142864 SERBP1 680722 sc-eQTL 8.62e-01 -0.0107 0.0615 0.648 Pro_T L2
ENSG00000162594 IL23R 972230 sc-eQTL 1.37e-01 0.0882 0.0591 0.648 Pro_T L2
ENSG00000116717 GADD45A 425936 sc-eQTL 7.93e-01 0.0181 0.0691 0.65 Treg L2
ENSG00000142864 SERBP1 680722 sc-eQTL 2.48e-02 -0.174 0.0768 0.65 Treg L2
ENSG00000116717 GADD45A 425936 sc-eQTL 4.32e-01 -0.0775 0.0984 0.646 cDC L2
ENSG00000116729 WLS -121983 sc-eQTL 9.77e-01 0.00248 0.0848 0.646 cDC L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.65e-01 0.0454 0.0789 0.646 cDC L2
ENSG00000116717 GADD45A 425936 sc-eQTL 2.23e-01 -0.0745 0.0609 0.65 cMono_IL1B L2
ENSG00000116729 WLS -121983 sc-eQTL 4.32e-02 0.16 0.0787 0.65 cMono_IL1B L2
ENSG00000142864 SERBP1 680722 sc-eQTL 2.79e-02 -0.153 0.069 0.65 cMono_IL1B L2
ENSG00000116717 GADD45A 425936 sc-eQTL 2.36e-01 0.0922 0.0776 0.65 cMono_S100A L2
ENSG00000116729 WLS -121983 sc-eQTL 6.25e-02 0.136 0.0724 0.65 cMono_S100A L2
ENSG00000142864 SERBP1 680722 sc-eQTL 6.85e-02 -0.143 0.0778 0.65 cMono_S100A L2
ENSG00000081985 IL12RB2 803773 sc-eQTL 8.86e-02 0.135 0.0786 0.642 gdT L2
ENSG00000116717 GADD45A 425936 sc-eQTL 7.25e-01 0.0346 0.0983 0.642 gdT L2
ENSG00000142864 SERBP1 680722 sc-eQTL 4.82e-02 0.228 0.114 0.642 gdT L2
ENSG00000162594 IL23R 972230 sc-eQTL 2.23e-01 0.12 0.0981 0.642 gdT L2
ENSG00000116717 GADD45A 425936 sc-eQTL 9.05e-01 0.01 0.0837 0.653 intMono L2
ENSG00000116729 WLS -121983 sc-eQTL 4.56e-01 -0.0665 0.0891 0.653 intMono L2
ENSG00000142864 SERBP1 680722 sc-eQTL 7.23e-01 -0.0308 0.0868 0.653 intMono L2
ENSG00000116717 GADD45A 425936 sc-eQTL 4.42e-01 0.07 0.0908 0.643 ncMono L2
ENSG00000116729 WLS -121983 sc-eQTL 2.67e-01 0.0926 0.0831 0.643 ncMono L2
ENSG00000142864 SERBP1 680722 sc-eQTL 5.56e-01 0.0479 0.0813 0.643 ncMono L2
ENSG00000116717 GADD45A 425936 sc-eQTL 4.03e-01 0.0757 0.0903 0.644 pDC L2
ENSG00000116729 WLS -121983 sc-eQTL 5.69e-01 -0.0432 0.0757 0.644 pDC L2
ENSG00000142864 SERBP1 680722 sc-eQTL 8.13e-01 -0.0205 0.0866 0.644 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 425936 sc-eQTL 1.82e-01 -0.102 0.0762 0.65 B_Memory LOneK1K
ENSG00000142864 SERBP1 680722 sc-eQTL 1.55e-01 -0.115 0.0806 0.65 B_Memory LOneK1K
ENSG00000116717 GADD45A 425936 sc-eQTL 7.54e-01 -0.0191 0.0607 0.65 B_Naive LOneK1K
ENSG00000142864 SERBP1 680722 sc-eQTL 4.99e-01 -0.0445 0.0658 0.65 B_Naive LOneK1K
ENSG00000116717 GADD45A 425936 sc-eQTL 7.26e-01 -0.0215 0.0613 0.65 CD14_Mono LOneK1K
ENSG00000116729 WLS -121983 sc-eQTL 3.87e-02 0.149 0.0718 0.65 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 680722 sc-eQTL 2.18e-02 -0.147 0.0634 0.65 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 425936 sc-eQTL 4.61e-01 0.0623 0.0844 0.653 CD16_Mono LOneK1K
ENSG00000116729 WLS -121983 sc-eQTL 9.42e-01 -0.00643 0.0885 0.653 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 680722 sc-eQTL 6.53e-01 0.0311 0.0691 0.653 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 803773 sc-eQTL 7.89e-01 -0.0167 0.0624 0.651 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 425936 sc-eQTL 6.06e-01 0.0366 0.071 0.651 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 680722 sc-eQTL 2.64e-01 -0.0729 0.0651 0.651 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000232284 GNG12-AS1 278834 eQTL 0.00858 0.0855 0.0325 0.0 0.0 0.397

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina