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Genes within 1Mb (chr1:68108760:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 423559 sc-eQTL 5.81e-01 -0.0297 0.0537 0.652 B L1
ENSG00000142864 SERBP1 678345 sc-eQTL 6.16e-01 -0.0288 0.0574 0.652 B L1
ENSG00000116717 GADD45A 423559 sc-eQTL 4.68e-02 0.102 0.0509 0.652 CD4T L1
ENSG00000142864 SERBP1 678345 sc-eQTL 6.46e-01 0.0234 0.0507 0.652 CD4T L1
ENSG00000116717 GADD45A 423559 sc-eQTL 2.06e-01 0.0578 0.0456 0.652 CD8T L1
ENSG00000142864 SERBP1 678345 sc-eQTL 9.64e-01 -0.00217 0.048 0.652 CD8T L1
ENSG00000116717 GADD45A 423559 sc-eQTL 7.85e-01 0.0255 0.0933 0.653 DC L1
ENSG00000116729 WLS -124360 sc-eQTL 9.70e-01 0.00309 0.0831 0.653 DC L1
ENSG00000142864 SERBP1 678345 sc-eQTL 9.70e-01 -0.00282 0.0756 0.653 DC L1
ENSG00000116717 GADD45A 423559 sc-eQTL 9.65e-01 0.00251 0.0569 0.652 Mono L1
ENSG00000116729 WLS -124360 sc-eQTL 2.16e-02 0.172 0.0744 0.652 Mono L1
ENSG00000142864 SERBP1 678345 sc-eQTL 6.15e-02 -0.113 0.0603 0.652 Mono L1
ENSG00000081985 IL12RB2 801396 sc-eQTL 8.10e-01 -0.0141 0.0586 0.652 NK L1
ENSG00000116717 GADD45A 423559 sc-eQTL 7.38e-01 0.023 0.0688 0.652 NK L1
ENSG00000142864 SERBP1 678345 sc-eQTL 2.45e-01 -0.0726 0.0623 0.652 NK L1
ENSG00000024526 DEPDC1 -388461 sc-eQTL 3.89e-02 0.0877 0.0422 0.652 Other_T L1
ENSG00000081985 IL12RB2 801396 sc-eQTL 4.56e-01 0.0606 0.0811 0.652 Other_T L1
ENSG00000116717 GADD45A 423559 sc-eQTL 9.96e-01 -0.000242 0.055 0.652 Other_T L1
ENSG00000142864 SERBP1 678345 sc-eQTL 4.48e-01 0.0476 0.0626 0.652 Other_T L1
ENSG00000162594 IL23R 969853 sc-eQTL 6.62e-01 0.0239 0.0547 0.652 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 423559 sc-eQTL 3.54e-01 0.0849 0.0912 0.635 B_Activated L2
ENSG00000142864 SERBP1 678345 sc-eQTL 4.27e-01 -0.0829 0.104 0.635 B_Activated L2
ENSG00000116717 GADD45A 423559 sc-eQTL 4.77e-01 -0.0564 0.0791 0.65 B_Intermediate L2
ENSG00000142864 SERBP1 678345 sc-eQTL 2.69e-01 -0.0958 0.0865 0.65 B_Intermediate L2
ENSG00000116717 GADD45A 423559 sc-eQTL 9.97e-01 0.000313 0.0861 0.651 B_Memory L2
ENSG00000142864 SERBP1 678345 sc-eQTL 8.38e-02 -0.149 0.0858 0.651 B_Memory L2
ENSG00000116717 GADD45A 423559 sc-eQTL 8.76e-01 -0.00955 0.0613 0.652 B_Naive1 L2
ENSG00000142864 SERBP1 678345 sc-eQTL 6.87e-01 0.0307 0.0762 0.652 B_Naive1 L2
ENSG00000116717 GADD45A 423559 sc-eQTL 9.22e-01 -0.00879 0.0896 0.652 B_Naive2 L2
ENSG00000142864 SERBP1 678345 sc-eQTL 3.62e-01 -0.0685 0.0751 0.652 B_Naive2 L2
ENSG00000116717 GADD45A 423559 sc-eQTL 9.00e-01 0.0102 0.0812 0.655 CD4_CTL L2
ENSG00000142864 SERBP1 678345 sc-eQTL 5.37e-01 -0.0579 0.0936 0.655 CD4_CTL L2
ENSG00000116717 GADD45A 423559 sc-eQTL 1.68e-02 0.128 0.0532 0.652 CD4_Naive L2
ENSG00000142864 SERBP1 678345 sc-eQTL 4.96e-01 0.036 0.0529 0.652 CD4_Naive L2
ENSG00000116717 GADD45A 423559 sc-eQTL 7.29e-01 0.0178 0.0514 0.652 CD4_TCM L2
ENSG00000142864 SERBP1 678345 sc-eQTL 8.50e-01 0.0133 0.0703 0.652 CD4_TCM L2
ENSG00000116717 GADD45A 423559 sc-eQTL 6.43e-02 0.104 0.0559 0.652 CD4_TEM L2
ENSG00000142864 SERBP1 678345 sc-eQTL 7.12e-02 -0.157 0.0865 0.652 CD4_TEM L2
ENSG00000116717 GADD45A 423559 sc-eQTL 3.70e-01 0.0577 0.0642 0.652 CD8_CTL L2
ENSG00000142864 SERBP1 678345 sc-eQTL 5.21e-02 -0.169 0.0868 0.652 CD8_CTL L2
ENSG00000116717 GADD45A 423559 sc-eQTL 4.17e-01 0.0444 0.0545 0.652 CD8_Naive L2
ENSG00000142864 SERBP1 678345 sc-eQTL 8.13e-01 0.0164 0.0692 0.652 CD8_Naive L2
ENSG00000116717 GADD45A 423559 sc-eQTL 1.27e-02 0.156 0.062 0.662 CD8_TCM L2
ENSG00000142864 SERBP1 678345 sc-eQTL 7.46e-01 0.0321 0.0988 0.662 CD8_TCM L2
ENSG00000116717 GADD45A 423559 sc-eQTL 1.54e-01 -0.107 0.0744 0.646 CD8_TEM L2
ENSG00000142864 SERBP1 678345 sc-eQTL 1.10e-01 -0.151 0.094 0.646 CD8_TEM L2
ENSG00000024526 DEPDC1 -388461 sc-eQTL 6.03e-01 0.0171 0.0329 0.654 MAIT L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 4.66e-01 0.066 0.0904 0.654 MAIT L2
ENSG00000116717 GADD45A 423559 sc-eQTL 2.04e-01 0.0862 0.0676 0.654 MAIT L2
ENSG00000142864 SERBP1 678345 sc-eQTL 7.92e-01 0.0225 0.085 0.654 MAIT L2
ENSG00000162594 IL23R 969853 sc-eQTL 6.43e-01 0.0312 0.0672 0.654 MAIT L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 7.29e-01 0.0253 0.0732 0.649 NK_CD56bright L2
ENSG00000116717 GADD45A 423559 sc-eQTL 7.83e-01 0.0234 0.0847 0.649 NK_CD56bright L2
ENSG00000142864 SERBP1 678345 sc-eQTL 5.68e-01 0.0499 0.0872 0.649 NK_CD56bright L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 6.07e-01 -0.0334 0.0648 0.653 NK_CD56dim L2
ENSG00000116717 GADD45A 423559 sc-eQTL 3.41e-01 0.0703 0.0737 0.653 NK_CD56dim L2
ENSG00000142864 SERBP1 678345 sc-eQTL 2.14e-01 -0.0874 0.0702 0.653 NK_CD56dim L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 4.75e-01 -0.0436 0.061 0.644 NK_HLA L2
ENSG00000116717 GADD45A 423559 sc-eQTL 6.16e-01 -0.0451 0.0896 0.644 NK_HLA L2
ENSG00000142864 SERBP1 678345 sc-eQTL 6.31e-01 -0.0393 0.0819 0.644 NK_HLA L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 7.45e-01 -0.0238 0.0731 0.653 NK_cytokine L2
ENSG00000116717 GADD45A 423559 sc-eQTL 7.69e-01 -0.0231 0.0786 0.653 NK_cytokine L2
ENSG00000142864 SERBP1 678345 sc-eQTL 9.45e-01 -0.00517 0.0752 0.653 NK_cytokine L2
ENSG00000116717 GADD45A 423559 sc-eQTL 2.93e-01 -0.112 0.107 0.663 PB L2
ENSG00000142864 SERBP1 678345 sc-eQTL 7.85e-01 -0.0214 0.0786 0.663 PB L2
ENSG00000024526 DEPDC1 -388461 sc-eQTL 1.26e-01 0.0866 0.0563 0.65 Pro_T L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 4.16e-01 0.069 0.0846 0.65 Pro_T L2
ENSG00000116717 GADD45A 423559 sc-eQTL 2.06e-02 -0.201 0.0861 0.65 Pro_T L2
ENSG00000142864 SERBP1 678345 sc-eQTL 7.71e-01 -0.0179 0.0614 0.65 Pro_T L2
ENSG00000162594 IL23R 969853 sc-eQTL 1.44e-01 0.0865 0.059 0.65 Pro_T L2
ENSG00000116717 GADD45A 423559 sc-eQTL 8.56e-01 0.0126 0.0691 0.652 Treg L2
ENSG00000142864 SERBP1 678345 sc-eQTL 3.96e-02 -0.159 0.0769 0.652 Treg L2
ENSG00000116717 GADD45A 423559 sc-eQTL 3.79e-01 -0.0867 0.0983 0.649 cDC L2
ENSG00000116729 WLS -124360 sc-eQTL 9.67e-01 -0.00354 0.0847 0.649 cDC L2
ENSG00000142864 SERBP1 678345 sc-eQTL 4.95e-01 0.0538 0.0788 0.649 cDC L2
ENSG00000116717 GADD45A 423559 sc-eQTL 2.38e-01 -0.0719 0.0608 0.652 cMono_IL1B L2
ENSG00000116729 WLS -124360 sc-eQTL 4.40e-02 0.159 0.0785 0.652 cMono_IL1B L2
ENSG00000142864 SERBP1 678345 sc-eQTL 2.25e-02 -0.158 0.0688 0.652 cMono_IL1B L2
ENSG00000116717 GADD45A 423559 sc-eQTL 2.11e-01 0.0971 0.0775 0.652 cMono_S100A L2
ENSG00000116729 WLS -124360 sc-eQTL 6.42e-02 0.134 0.0723 0.652 cMono_S100A L2
ENSG00000142864 SERBP1 678345 sc-eQTL 5.83e-02 -0.148 0.0777 0.652 cMono_S100A L2
ENSG00000081985 IL12RB2 801396 sc-eQTL 7.55e-02 0.14 0.0781 0.645 gdT L2
ENSG00000116717 GADD45A 423559 sc-eQTL 6.69e-01 0.042 0.0978 0.645 gdT L2
ENSG00000142864 SERBP1 678345 sc-eQTL 4.26e-02 0.233 0.114 0.645 gdT L2
ENSG00000162594 IL23R 969853 sc-eQTL 2.63e-01 0.11 0.0977 0.645 gdT L2
ENSG00000116717 GADD45A 423559 sc-eQTL 9.62e-01 -0.00396 0.0837 0.656 intMono L2
ENSG00000116729 WLS -124360 sc-eQTL 4.15e-01 -0.0728 0.0891 0.656 intMono L2
ENSG00000142864 SERBP1 678345 sc-eQTL 6.19e-01 -0.0433 0.0868 0.656 intMono L2
ENSG00000116717 GADD45A 423559 sc-eQTL 4.14e-01 0.0742 0.0907 0.645 ncMono L2
ENSG00000116729 WLS -124360 sc-eQTL 2.98e-01 0.0867 0.0831 0.645 ncMono L2
ENSG00000142864 SERBP1 678345 sc-eQTL 5.14e-01 0.0531 0.0812 0.645 ncMono L2
ENSG00000116717 GADD45A 423559 sc-eQTL 3.69e-01 0.0813 0.0902 0.647 pDC L2
ENSG00000116729 WLS -124360 sc-eQTL 5.76e-01 -0.0423 0.0756 0.647 pDC L2
ENSG00000142864 SERBP1 678345 sc-eQTL 6.76e-01 -0.0362 0.0864 0.647 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 423559 sc-eQTL 2.51e-01 -0.0876 0.0761 0.652 B_Memory LOneK1K
ENSG00000142864 SERBP1 678345 sc-eQTL 1.61e-01 -0.113 0.0805 0.652 B_Memory LOneK1K
ENSG00000116717 GADD45A 423559 sc-eQTL 8.70e-01 -0.00998 0.0607 0.652 B_Naive LOneK1K
ENSG00000142864 SERBP1 678345 sc-eQTL 4.87e-01 -0.0458 0.0658 0.652 B_Naive LOneK1K
ENSG00000116717 GADD45A 423559 sc-eQTL 7.64e-01 -0.0184 0.0612 0.652 CD14_Mono LOneK1K
ENSG00000116729 WLS -124360 sc-eQTL 4.01e-02 0.148 0.0717 0.652 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 678345 sc-eQTL 1.72e-02 -0.152 0.0633 0.652 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 423559 sc-eQTL 4.50e-01 0.0639 0.0844 0.655 CD16_Mono LOneK1K
ENSG00000116729 WLS -124360 sc-eQTL 8.63e-01 -0.0153 0.0885 0.655 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 678345 sc-eQTL 6.51e-01 0.0313 0.0691 0.655 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 801396 sc-eQTL 8.58e-01 -0.0112 0.0624 0.653 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 423559 sc-eQTL 5.79e-01 0.0394 0.0709 0.653 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 678345 sc-eQTL 2.49e-01 -0.0752 0.0651 0.653 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000232284 GNG12-AS1 276457 eQTL 0.00764 0.0871 0.0326 0.0 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina