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Genes within 1Mb (chr1:68097085:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 411884 sc-eQTL 3.00e-01 -0.0552 0.0532 0.28 B L1
ENSG00000142864 SERBP1 666670 sc-eQTL 9.78e-01 -0.00154 0.057 0.28 B L1
ENSG00000116717 GADD45A 411884 sc-eQTL 4.34e-01 0.041 0.0523 0.28 CD4T L1
ENSG00000142864 SERBP1 666670 sc-eQTL 2.16e-01 -0.0639 0.0515 0.28 CD4T L1
ENSG00000116717 GADD45A 411884 sc-eQTL 8.93e-01 0.00633 0.0469 0.28 CD8T L1
ENSG00000142864 SERBP1 666670 sc-eQTL 3.67e-01 -0.0444 0.0491 0.28 CD8T L1
ENSG00000116717 GADD45A 411884 sc-eQTL 8.93e-01 -0.013 0.0967 0.279 DC L1
ENSG00000116729 WLS -136035 sc-eQTL 5.44e-01 0.0523 0.0861 0.279 DC L1
ENSG00000142864 SERBP1 666670 sc-eQTL 6.68e-01 -0.0336 0.0783 0.279 DC L1
ENSG00000116717 GADD45A 411884 sc-eQTL 7.06e-01 0.0222 0.0589 0.28 Mono L1
ENSG00000116729 WLS -136035 sc-eQTL 1.92e-01 -0.102 0.0777 0.28 Mono L1
ENSG00000142864 SERBP1 666670 sc-eQTL 1.94e-01 -0.0817 0.0627 0.28 Mono L1
ENSG00000081985 IL12RB2 789721 sc-eQTL 5.69e-01 0.0347 0.0608 0.277 NK L1
ENSG00000116717 GADD45A 411884 sc-eQTL 6.75e-01 0.03 0.0714 0.277 NK L1
ENSG00000142864 SERBP1 666670 sc-eQTL 9.94e-02 -0.107 0.0645 0.277 NK L1
ENSG00000024526 DEPDC1 -400136 sc-eQTL 4.58e-01 0.0333 0.0448 0.28 Other_T L1
ENSG00000081985 IL12RB2 789721 sc-eQTL 5.78e-01 0.0476 0.0854 0.28 Other_T L1
ENSG00000116717 GADD45A 411884 sc-eQTL 2.57e-01 -0.0656 0.0577 0.28 Other_T L1
ENSG00000142864 SERBP1 666670 sc-eQTL 1.59e-01 -0.0927 0.0656 0.28 Other_T L1
ENSG00000162594 IL23R 958178 sc-eQTL 9.91e-02 0.0948 0.0572 0.28 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 411884 sc-eQTL 7.45e-01 -0.0317 0.0973 0.27 B_Activated L2
ENSG00000142864 SERBP1 666670 sc-eQTL 8.69e-01 -0.0184 0.111 0.27 B_Activated L2
ENSG00000116717 GADD45A 411884 sc-eQTL 3.95e-01 -0.0707 0.083 0.279 B_Intermediate L2
ENSG00000142864 SERBP1 666670 sc-eQTL 8.89e-02 0.155 0.0905 0.279 B_Intermediate L2
ENSG00000116717 GADD45A 411884 sc-eQTL 2.41e-01 -0.106 0.0899 0.282 B_Memory L2
ENSG00000142864 SERBP1 666670 sc-eQTL 7.47e-01 0.0292 0.0905 0.282 B_Memory L2
ENSG00000116717 GADD45A 411884 sc-eQTL 4.51e-01 0.048 0.0635 0.28 B_Naive1 L2
ENSG00000142864 SERBP1 666670 sc-eQTL 8.65e-01 -0.0135 0.0792 0.28 B_Naive1 L2
ENSG00000116717 GADD45A 411884 sc-eQTL 3.00e-01 0.0981 0.0943 0.281 B_Naive2 L2
ENSG00000142864 SERBP1 666670 sc-eQTL 6.68e-02 0.145 0.0788 0.281 B_Naive2 L2
ENSG00000116717 GADD45A 411884 sc-eQTL 1.80e-01 0.114 0.0848 0.282 CD4_CTL L2
ENSG00000142864 SERBP1 666670 sc-eQTL 4.41e-01 0.0758 0.0982 0.282 CD4_CTL L2
ENSG00000116717 GADD45A 411884 sc-eQTL 5.20e-01 0.0356 0.0553 0.28 CD4_Naive L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.23e-01 -0.0662 0.0542 0.28 CD4_Naive L2
ENSG00000116717 GADD45A 411884 sc-eQTL 6.77e-01 0.0222 0.0533 0.28 CD4_TCM L2
ENSG00000142864 SERBP1 666670 sc-eQTL 1.74e-01 -0.0991 0.0727 0.28 CD4_TCM L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.44e-01 -0.00414 0.0589 0.28 CD4_TEM L2
ENSG00000142864 SERBP1 666670 sc-eQTL 7.52e-01 0.0288 0.0911 0.28 CD4_TEM L2
ENSG00000116717 GADD45A 411884 sc-eQTL 4.83e-01 -0.0475 0.0676 0.28 CD8_CTL L2
ENSG00000142864 SERBP1 666670 sc-eQTL 1.34e-01 0.138 0.0915 0.28 CD8_CTL L2
ENSG00000116717 GADD45A 411884 sc-eQTL 3.55e-01 0.0522 0.0563 0.28 CD8_Naive L2
ENSG00000142864 SERBP1 666670 sc-eQTL 9.51e-01 -0.00436 0.0714 0.28 CD8_Naive L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.50e-01 -0.00412 0.0662 0.285 CD8_TCM L2
ENSG00000142864 SERBP1 666670 sc-eQTL 4.77e-01 -0.074 0.104 0.285 CD8_TCM L2
ENSG00000116717 GADD45A 411884 sc-eQTL 3.74e-01 -0.0704 0.079 0.285 CD8_TEM L2
ENSG00000142864 SERBP1 666670 sc-eQTL 4.50e-01 -0.0757 0.0999 0.285 CD8_TEM L2
ENSG00000024526 DEPDC1 -400136 sc-eQTL 5.83e-01 0.0192 0.0349 0.284 MAIT L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 4.41e-01 0.0742 0.096 0.284 MAIT L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.72e-01 0.00258 0.0721 0.284 MAIT L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.70e-02 -0.199 0.0892 0.284 MAIT L2
ENSG00000162594 IL23R 958178 sc-eQTL 1.70e-01 0.0978 0.0711 0.284 MAIT L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 4.22e-01 0.0613 0.0762 0.271 NK_CD56bright L2
ENSG00000116717 GADD45A 411884 sc-eQTL 1.23e-01 -0.136 0.0878 0.271 NK_CD56bright L2
ENSG00000142864 SERBP1 666670 sc-eQTL 1.41e-01 0.134 0.0905 0.271 NK_CD56bright L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 8.79e-01 0.0103 0.0679 0.276 NK_CD56dim L2
ENSG00000116717 GADD45A 411884 sc-eQTL 6.21e-01 -0.0383 0.0772 0.276 NK_CD56dim L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.95e-01 -0.0771 0.0735 0.276 NK_CD56dim L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 9.15e-01 0.00695 0.0648 0.279 NK_HLA L2
ENSG00000116717 GADD45A 411884 sc-eQTL 3.95e-02 0.195 0.0941 0.279 NK_HLA L2
ENSG00000142864 SERBP1 666670 sc-eQTL 6.46e-01 0.0399 0.0868 0.279 NK_HLA L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 1.58e-01 0.109 0.0769 0.276 NK_cytokine L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.36e-01 0.00665 0.0831 0.276 NK_cytokine L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.26e-02 -0.18 0.0785 0.276 NK_cytokine L2
ENSG00000116717 GADD45A 411884 sc-eQTL 4.28e-01 0.0889 0.112 0.274 PB L2
ENSG00000142864 SERBP1 666670 sc-eQTL 6.39e-01 -0.0387 0.0822 0.274 PB L2
ENSG00000024526 DEPDC1 -400136 sc-eQTL 9.77e-01 0.00169 0.0597 0.283 Pro_T L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 7.54e-01 -0.028 0.0894 0.283 Pro_T L2
ENSG00000116717 GADD45A 411884 sc-eQTL 4.05e-01 -0.0767 0.0919 0.283 Pro_T L2
ENSG00000142864 SERBP1 666670 sc-eQTL 4.48e-01 0.0492 0.0648 0.283 Pro_T L2
ENSG00000162594 IL23R 958178 sc-eQTL 3.86e-01 -0.0543 0.0625 0.283 Pro_T L2
ENSG00000116717 GADD45A 411884 sc-eQTL 4.80e-01 0.0509 0.0719 0.28 Treg L2
ENSG00000142864 SERBP1 666670 sc-eQTL 7.52e-01 -0.0256 0.0809 0.28 Treg L2
ENSG00000116717 GADD45A 411884 sc-eQTL 5.23e-01 -0.0675 0.105 0.288 cDC L2
ENSG00000116729 WLS -136035 sc-eQTL 9.35e-01 0.00747 0.0908 0.288 cDC L2
ENSG00000142864 SERBP1 666670 sc-eQTL 7.29e-01 0.0294 0.0845 0.288 cDC L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.60e-01 0.00312 0.0625 0.28 cMono_IL1B L2
ENSG00000116729 WLS -136035 sc-eQTL 1.00e-01 -0.133 0.0807 0.28 cMono_IL1B L2
ENSG00000142864 SERBP1 666670 sc-eQTL 1.80e-01 -0.0957 0.0711 0.28 cMono_IL1B L2
ENSG00000116717 GADD45A 411884 sc-eQTL 8.80e-02 0.137 0.0798 0.28 cMono_S100A L2
ENSG00000116729 WLS -136035 sc-eQTL 9.41e-01 0.00554 0.0753 0.28 cMono_S100A L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.95e-01 0.0848 0.0808 0.28 cMono_S100A L2
ENSG00000081985 IL12RB2 789721 sc-eQTL 2.66e-01 0.0926 0.083 0.285 gdT L2
ENSG00000116717 GADD45A 411884 sc-eQTL 7.83e-01 0.0284 0.103 0.285 gdT L2
ENSG00000142864 SERBP1 666670 sc-eQTL 9.06e-01 0.0144 0.122 0.285 gdT L2
ENSG00000162594 IL23R 958178 sc-eQTL 6.03e-01 0.0539 0.103 0.285 gdT L2
ENSG00000116717 GADD45A 411884 sc-eQTL 6.78e-01 -0.0353 0.0849 0.28 intMono L2
ENSG00000116729 WLS -136035 sc-eQTL 7.44e-01 -0.0296 0.0906 0.28 intMono L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.72e-01 -0.0968 0.0879 0.28 intMono L2
ENSG00000116717 GADD45A 411884 sc-eQTL 9.53e-01 -0.00557 0.0951 0.274 ncMono L2
ENSG00000116729 WLS -136035 sc-eQTL 7.32e-01 -0.0299 0.0872 0.274 ncMono L2
ENSG00000142864 SERBP1 666670 sc-eQTL 2.42e-01 -0.0996 0.0848 0.274 ncMono L2
ENSG00000116717 GADD45A 411884 sc-eQTL 6.67e-01 0.0426 0.0989 0.291 pDC L2
ENSG00000116729 WLS -136035 sc-eQTL 6.48e-01 0.0378 0.0827 0.291 pDC L2
ENSG00000142864 SERBP1 666670 sc-eQTL 6.96e-01 -0.0371 0.0946 0.291 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116717 GADD45A 411884 sc-eQTL 1.62e-01 -0.109 0.0778 0.28 B_Memory LOneK1K
ENSG00000142864 SERBP1 666670 sc-eQTL 2.21e-01 0.101 0.0824 0.28 B_Memory LOneK1K
ENSG00000116717 GADD45A 411884 sc-eQTL 2.62e-01 0.0701 0.0623 0.28 B_Naive LOneK1K
ENSG00000142864 SERBP1 666670 sc-eQTL 7.64e-01 0.0203 0.0678 0.28 B_Naive LOneK1K
ENSG00000116717 GADD45A 411884 sc-eQTL 6.96e-01 0.0243 0.0622 0.28 CD14_Mono LOneK1K
ENSG00000116729 WLS -136035 sc-eQTL 2.60e-01 -0.0828 0.0733 0.28 CD14_Mono LOneK1K
ENSG00000142864 SERBP1 666670 sc-eQTL 3.34e-01 -0.063 0.065 0.28 CD14_Mono LOneK1K
ENSG00000116717 GADD45A 411884 sc-eQTL 7.89e-01 0.0231 0.0864 0.278 CD16_Mono LOneK1K
ENSG00000116729 WLS -136035 sc-eQTL 3.06e-01 -0.0927 0.0903 0.278 CD16_Mono LOneK1K
ENSG00000142864 SERBP1 666670 sc-eQTL 1.97e-01 -0.0912 0.0704 0.278 CD16_Mono LOneK1K
ENSG00000081985 IL12RB2 789721 sc-eQTL 4.87e-01 0.0456 0.0654 0.276 NK_CD56dim LOneK1K
ENSG00000116717 GADD45A 411884 sc-eQTL 7.86e-01 0.0202 0.0745 0.276 NK_CD56dim LOneK1K
ENSG00000142864 SERBP1 666670 sc-eQTL 5.79e-02 -0.13 0.0679 0.276 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116717 GADD45A 411884 eQTL 0.0377 0.0297 0.0143 0.00116 0.0 0.245
ENSG00000232284 GNG12-AS1 264782 eQTL 0.0276 -0.087 0.0394 0.0 0.0 0.245

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081985 \N 789721 2.76e-07 1.34e-07 5.14e-08 1.89e-07 9.25e-08 9.9e-08 1.6e-07 5.4e-08 1.45e-07 5.67e-08 1.57e-07 1.08e-07 1.53e-07 7.37e-08 5.98e-08 7.36e-08 3.98e-08 1.33e-07 5.97e-08 4.8e-08 1.19e-07 1.24e-07 1.45e-07 2.93e-08 1.63e-07 1.14e-07 1.1e-07 1.01e-07 1.16e-07 1.07e-07 1.06e-07 3.26e-08 3.61e-08 8e-08 7.02e-08 3.65e-08 4.95e-08 9.23e-08 6.63e-08 3.71e-08 5.13e-08 1.46e-07 5.08e-08 1.86e-08 3.81e-08 1.84e-08 1.21e-07 3.79e-09 4.88e-08
ENSG00000116717 GADD45A 411884 9.36e-07 6.04e-07 1e-07 4.27e-07 1.07e-07 2.09e-07 5.76e-07 1.01e-07 5.02e-07 2.43e-07 8.08e-07 4.24e-07 8.34e-07 1.59e-07 2.81e-07 2.18e-07 1.69e-07 3.74e-07 1.93e-07 1.69e-07 1.87e-07 3.87e-07 3.45e-07 1.36e-07 8.99e-07 2.4e-07 2.72e-07 2.69e-07 3.83e-07 5.17e-07 3.43e-07 7.4e-08 5.58e-08 1.39e-07 3.05e-07 6.73e-08 8.87e-08 6.46e-08 4.55e-08 5.72e-08 2.95e-08 6.15e-07 1.21e-08 1.86e-08 1.34e-07 1.88e-08 8.01e-08 3.14e-09 5.54e-08