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Genes within 1Mb (chr1:65813442:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 745688 sc-eQTL 5.62e-01 -0.032 0.0552 0.35 B L1
ENSG00000184588 PDE4B 20928 sc-eQTL 7.96e-01 -0.0149 0.0576 0.35 B L1
ENSG00000213625 LEPROT 392855 sc-eQTL 7.97e-01 -0.0181 0.0705 0.35 B L1
ENSG00000162434 JAK1 745688 sc-eQTL 6.50e-01 -0.0242 0.0532 0.35 CD4T L1
ENSG00000184588 PDE4B 20928 sc-eQTL 4.16e-01 0.0517 0.0634 0.35 CD4T L1
ENSG00000213625 LEPROT 392855 sc-eQTL 9.39e-01 0.00635 0.0832 0.35 CD4T L1
ENSG00000116678 LEPR 392790 sc-eQTL 2.74e-02 -0.199 0.0894 0.35 CD8T L1
ENSG00000162434 JAK1 745688 sc-eQTL 4.78e-01 0.0497 0.07 0.35 CD8T L1
ENSG00000184588 PDE4B 20928 sc-eQTL 1.71e-01 0.0819 0.0596 0.35 CD8T L1
ENSG00000213625 LEPROT 392855 sc-eQTL 8.04e-01 -0.0231 0.0929 0.35 CD8T L1
ENSG00000116678 LEPR 392790 sc-eQTL 1.21e-02 0.227 0.0895 0.349 DC L1
ENSG00000162433 AK4 665893 sc-eQTL 7.93e-01 0.0201 0.0764 0.349 DC L1
ENSG00000162434 JAK1 745688 sc-eQTL 8.66e-01 0.0108 0.0635 0.349 DC L1
ENSG00000184588 PDE4B 20928 sc-eQTL 5.58e-01 0.0289 0.0492 0.349 DC L1
ENSG00000213625 LEPROT 392855 sc-eQTL 1.38e-01 0.134 0.0896 0.349 DC L1
ENSG00000285079 AL513493.1 109480 sc-eQTL 6.72e-01 0.0206 0.0485 0.349 DC L1
ENSG00000116678 LEPR 392790 sc-eQTL 7.57e-01 0.0272 0.088 0.35 Mono L1
ENSG00000162433 AK4 665893 sc-eQTL 8.34e-01 0.0169 0.0806 0.35 Mono L1
ENSG00000162434 JAK1 745688 sc-eQTL 5.81e-01 -0.0317 0.0574 0.35 Mono L1
ENSG00000184588 PDE4B 20928 sc-eQTL 6.09e-02 0.0594 0.0315 0.35 Mono L1
ENSG00000213625 LEPROT 392855 sc-eQTL 3.29e-01 -0.0556 0.0568 0.35 Mono L1
ENSG00000116678 LEPR 392790 sc-eQTL 9.56e-03 0.226 0.0863 0.35 NK L1
ENSG00000162434 JAK1 745688 sc-eQTL 6.95e-01 0.0163 0.0414 0.35 NK L1
ENSG00000184588 PDE4B 20928 sc-eQTL 1.47e-01 0.0819 0.0563 0.35 NK L1
ENSG00000213625 LEPROT 392855 sc-eQTL 9.91e-01 0.00105 0.0945 0.35 NK L1
ENSG00000162434 JAK1 745688 sc-eQTL 8.20e-02 -0.104 0.0592 0.35 Other_T L1
ENSG00000184588 PDE4B 20928 sc-eQTL 2.45e-01 0.0753 0.0646 0.35 Other_T L1
ENSG00000213625 LEPROT 392855 sc-eQTL 3.16e-01 -0.094 0.0935 0.35 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 745688 sc-eQTL 7.69e-01 0.028 0.0951 0.352 B_Activated L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.07e-01 0.0184 0.0755 0.352 B_Activated L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.74e-01 -0.0713 0.0993 0.352 B_Activated L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.61e-01 0.0342 0.078 0.35 B_Intermediate L2
ENSG00000184588 PDE4B 20928 sc-eQTL 9.89e-01 -0.000875 0.0636 0.35 B_Intermediate L2
ENSG00000213625 LEPROT 392855 sc-eQTL 6.62e-02 -0.168 0.0907 0.35 B_Intermediate L2
ENSG00000162434 JAK1 745688 sc-eQTL 2.09e-01 -0.0976 0.0774 0.353 B_Memory L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.08e-01 -0.0193 0.0793 0.353 B_Memory L2
ENSG00000213625 LEPROT 392855 sc-eQTL 6.94e-01 0.0355 0.0902 0.353 B_Memory L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.20e-01 -0.016 0.0701 0.35 B_Naive1 L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.07e-01 -0.0165 0.0676 0.35 B_Naive1 L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.10e-01 -0.0754 0.0913 0.35 B_Naive1 L2
ENSG00000162434 JAK1 745688 sc-eQTL 9.19e-01 -0.00748 0.0739 0.352 B_Naive2 L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.19e-01 0.0134 0.0584 0.352 B_Naive2 L2
ENSG00000213625 LEPROT 392855 sc-eQTL 1.76e-02 0.21 0.0879 0.352 B_Naive2 L2
ENSG00000162434 JAK1 745688 sc-eQTL 5.02e-01 0.0574 0.0853 0.352 CD4_CTL L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.71e-01 -0.0123 0.0755 0.352 CD4_CTL L2
ENSG00000213625 LEPROT 392855 sc-eQTL 2.10e-01 0.123 0.0977 0.352 CD4_CTL L2
ENSG00000162434 JAK1 745688 sc-eQTL 9.58e-01 -0.00273 0.0523 0.35 CD4_Naive L2
ENSG00000184588 PDE4B 20928 sc-eQTL 2.18e-01 0.0806 0.0652 0.35 CD4_Naive L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.91e-01 0.0585 0.0847 0.35 CD4_Naive L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.46e-01 -0.0115 0.0594 0.35 CD4_TCM L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.46e-01 -0.0133 0.068 0.35 CD4_TCM L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.38e-02 -0.173 0.0853 0.35 CD4_TCM L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.83e-01 -0.0117 0.0792 0.35 CD4_TEM L2
ENSG00000184588 PDE4B 20928 sc-eQTL 2.19e-01 0.0898 0.0729 0.35 CD4_TEM L2
ENSG00000213625 LEPROT 392855 sc-eQTL 7.76e-01 0.0268 0.094 0.35 CD4_TEM L2
ENSG00000116678 LEPR 392790 sc-eQTL 4.16e-02 -0.18 0.088 0.35 CD8_CTL L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.69e-01 0.032 0.0746 0.35 CD8_CTL L2
ENSG00000184588 PDE4B 20928 sc-eQTL 2.89e-01 0.0732 0.0688 0.35 CD8_CTL L2
ENSG00000213625 LEPROT 392855 sc-eQTL 5.37e-01 -0.0563 0.0911 0.35 CD8_CTL L2
ENSG00000116678 LEPR 392790 sc-eQTL 1.12e-01 -0.14 0.0875 0.35 CD8_Naive L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.66e-01 -0.0317 0.0734 0.35 CD8_Naive L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.63e-01 0.086 0.0614 0.35 CD8_Naive L2
ENSG00000213625 LEPROT 392855 sc-eQTL 7.66e-01 -0.0268 0.0899 0.35 CD8_Naive L2
ENSG00000116678 LEPR 392790 sc-eQTL 2.45e-01 -0.103 0.0881 0.354 CD8_TCM L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.57e-01 0.0138 0.0768 0.354 CD8_TCM L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.12e-01 0.0201 0.0845 0.354 CD8_TCM L2
ENSG00000213625 LEPROT 392855 sc-eQTL 6.64e-01 -0.0416 0.0958 0.354 CD8_TCM L2
ENSG00000116678 LEPR 392790 sc-eQTL 3.73e-01 -0.073 0.0818 0.349 CD8_TEM L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.54e-01 0.0415 0.0926 0.349 CD8_TEM L2
ENSG00000184588 PDE4B 20928 sc-eQTL 7.38e-01 0.0264 0.0788 0.349 CD8_TEM L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.18e-01 0.0773 0.0953 0.349 CD8_TEM L2
ENSG00000162434 JAK1 745688 sc-eQTL 2.86e-01 -0.0891 0.0833 0.351 MAIT L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.44e-01 0.104 0.0711 0.351 MAIT L2
ENSG00000213625 LEPROT 392855 sc-eQTL 2.51e-02 -0.215 0.0951 0.351 MAIT L2
ENSG00000116678 LEPR 392790 sc-eQTL 5.45e-01 0.0516 0.0852 0.36 NK_CD56bright L2
ENSG00000162434 JAK1 745688 sc-eQTL 3.92e-01 -0.05 0.0583 0.36 NK_CD56bright L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.27e-01 0.107 0.0697 0.36 NK_CD56bright L2
ENSG00000213625 LEPROT 392855 sc-eQTL 6.46e-01 0.0441 0.0959 0.36 NK_CD56bright L2
ENSG00000116678 LEPR 392790 sc-eQTL 1.85e-01 0.123 0.0924 0.351 NK_CD56dim L2
ENSG00000162434 JAK1 745688 sc-eQTL 9.03e-01 -0.00591 0.0485 0.351 NK_CD56dim L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.69e-01 0.0973 0.0705 0.351 NK_CD56dim L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.49e-01 -0.0187 0.0981 0.351 NK_CD56dim L2
ENSG00000116678 LEPR 392790 sc-eQTL 2.88e-01 0.086 0.0808 0.356 NK_HLA L2
ENSG00000162434 JAK1 745688 sc-eQTL 7.98e-01 0.0162 0.0631 0.356 NK_HLA L2
ENSG00000184588 PDE4B 20928 sc-eQTL 8.80e-01 -0.0116 0.0768 0.356 NK_HLA L2
ENSG00000213625 LEPROT 392855 sc-eQTL 7.07e-01 0.0368 0.0978 0.356 NK_HLA L2
ENSG00000116678 LEPR 392790 sc-eQTL 1.31e-02 0.22 0.0879 0.351 NK_cytokine L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.56e-01 0.00947 0.0519 0.351 NK_cytokine L2
ENSG00000184588 PDE4B 20928 sc-eQTL 6.65e-02 0.149 0.0808 0.351 NK_cytokine L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.62e-01 0.0165 0.0944 0.351 NK_cytokine L2
ENSG00000162434 JAK1 745688 sc-eQTL 9.83e-01 -0.00187 0.0886 0.319 PB L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.29e-01 -0.17 0.111 0.319 PB L2
ENSG00000213625 LEPROT 392855 sc-eQTL 4.44e-01 -0.095 0.124 0.319 PB L2
ENSG00000162434 JAK1 745688 sc-eQTL 3.62e-01 -0.0545 0.0597 0.348 Pro_T L2
ENSG00000184588 PDE4B 20928 sc-eQTL 2.95e-01 0.077 0.0733 0.348 Pro_T L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.85e-01 0.0135 0.0931 0.348 Pro_T L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.90e-01 -0.0102 0.0739 0.35 Treg L2
ENSG00000184588 PDE4B 20928 sc-eQTL 6.97e-01 -0.0262 0.0674 0.35 Treg L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.92e-02 -0.162 0.0951 0.35 Treg L2
ENSG00000116678 LEPR 392790 sc-eQTL 1.02e-01 0.148 0.0901 0.356 cDC L2
ENSG00000162433 AK4 665893 sc-eQTL 8.17e-01 0.0186 0.0802 0.356 cDC L2
ENSG00000162434 JAK1 745688 sc-eQTL 7.12e-01 -0.0277 0.0748 0.356 cDC L2
ENSG00000184588 PDE4B 20928 sc-eQTL 6.24e-01 -0.0246 0.0502 0.356 cDC L2
ENSG00000213625 LEPROT 392855 sc-eQTL 3.94e-01 0.0779 0.0911 0.356 cDC L2
ENSG00000285079 AL513493.1 109480 sc-eQTL 8.12e-02 -0.057 0.0325 0.356 cDC L2
ENSG00000116678 LEPR 392790 sc-eQTL 5.16e-01 -0.0577 0.0886 0.35 cMono_IL1B L2
ENSG00000162433 AK4 665893 sc-eQTL 1.28e-01 0.124 0.0812 0.35 cMono_IL1B L2
ENSG00000162434 JAK1 745688 sc-eQTL 8.65e-01 -0.0127 0.0742 0.35 cMono_IL1B L2
ENSG00000184588 PDE4B 20928 sc-eQTL 1.86e-01 0.0544 0.041 0.35 cMono_IL1B L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.09e-01 -0.0145 0.06 0.35 cMono_IL1B L2
ENSG00000116678 LEPR 392790 sc-eQTL 3.70e-01 0.0779 0.0867 0.35 cMono_S100A L2
ENSG00000162433 AK4 665893 sc-eQTL 2.00e-01 -0.106 0.0821 0.35 cMono_S100A L2
ENSG00000162434 JAK1 745688 sc-eQTL 7.58e-01 0.0235 0.076 0.35 cMono_S100A L2
ENSG00000184588 PDE4B 20928 sc-eQTL 5.55e-01 0.0254 0.043 0.35 cMono_S100A L2
ENSG00000213625 LEPROT 392855 sc-eQTL 3.46e-01 -0.067 0.071 0.35 cMono_S100A L2
ENSG00000162434 JAK1 745688 sc-eQTL 7.85e-02 -0.186 0.105 0.364 gdT L2
ENSG00000184588 PDE4B 20928 sc-eQTL 3.50e-01 0.0577 0.0616 0.364 gdT L2
ENSG00000213625 LEPROT 392855 sc-eQTL 8.99e-01 0.0143 0.112 0.364 gdT L2
ENSG00000116678 LEPR 392790 sc-eQTL 2.76e-01 -0.0946 0.0866 0.356 intMono L2
ENSG00000162433 AK4 665893 sc-eQTL 9.07e-01 -0.00957 0.0818 0.356 intMono L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.26e-01 -0.0369 0.0756 0.356 intMono L2
ENSG00000184588 PDE4B 20928 sc-eQTL 2.30e-01 0.0525 0.0436 0.356 intMono L2
ENSG00000213625 LEPROT 392855 sc-eQTL 5.15e-01 -0.0475 0.0729 0.356 intMono L2
ENSG00000116678 LEPR 392790 sc-eQTL 3.74e-01 0.0758 0.0851 0.351 ncMono L2
ENSG00000162433 AK4 665893 sc-eQTL 4.69e-01 0.0551 0.0759 0.351 ncMono L2
ENSG00000162434 JAK1 745688 sc-eQTL 6.99e-01 -0.0238 0.0615 0.351 ncMono L2
ENSG00000184588 PDE4B 20928 sc-eQTL 6.62e-01 0.0214 0.0488 0.351 ncMono L2
ENSG00000213625 LEPROT 392855 sc-eQTL 7.57e-01 -0.027 0.0872 0.351 ncMono L2
ENSG00000116678 LEPR 392790 sc-eQTL 1.41e-01 0.134 0.0903 0.356 pDC L2
ENSG00000162433 AK4 665893 sc-eQTL 8.99e-01 0.00755 0.0593 0.356 pDC L2
ENSG00000162434 JAK1 745688 sc-eQTL 2.14e-01 0.0983 0.0788 0.356 pDC L2
ENSG00000184588 PDE4B 20928 sc-eQTL 6.68e-02 0.126 0.0684 0.356 pDC L2
ENSG00000213625 LEPROT 392855 sc-eQTL 3.10e-01 0.0998 0.0979 0.356 pDC L2
ENSG00000285079 AL513493.1 109480 sc-eQTL 9.96e-01 0.000384 0.0742 0.356 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 745688 sc-eQTL 7.49e-01 -0.0221 0.0691 0.35 B_Memory LOneK1K
ENSG00000184588 PDE4B 20928 sc-eQTL 3.89e-01 0.0489 0.0566 0.35 B_Memory LOneK1K
ENSG00000213625 LEPROT 392855 sc-eQTL 4.31e-01 -0.0699 0.0886 0.35 B_Memory LOneK1K
ENSG00000162434 JAK1 745688 sc-eQTL 7.91e-01 -0.018 0.0678 0.35 B_Naive LOneK1K
ENSG00000184588 PDE4B 20928 sc-eQTL 8.09e-01 -0.0147 0.0609 0.35 B_Naive LOneK1K
ENSG00000213625 LEPROT 392855 sc-eQTL 4.92e-01 0.059 0.0856 0.35 B_Naive LOneK1K
ENSG00000116678 LEPR 392790 sc-eQTL 9.64e-01 0.00395 0.0867 0.35 CD14_Mono LOneK1K
ENSG00000162433 AK4 665893 sc-eQTL 9.72e-01 -0.00292 0.0829 0.35 CD14_Mono LOneK1K
ENSG00000162434 JAK1 745688 sc-eQTL 6.78e-01 -0.0288 0.0694 0.35 CD14_Mono LOneK1K
ENSG00000184588 PDE4B 20928 sc-eQTL 3.52e-01 0.033 0.0353 0.35 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 392855 sc-eQTL 3.99e-01 -0.0491 0.0581 0.35 CD14_Mono LOneK1K
ENSG00000116678 LEPR 392790 sc-eQTL 3.71e-01 -0.078 0.087 0.349 CD16_Mono LOneK1K
ENSG00000162433 AK4 665893 sc-eQTL 4.35e-01 0.0616 0.0788 0.349 CD16_Mono LOneK1K
ENSG00000162434 JAK1 745688 sc-eQTL 8.65e-01 -0.00905 0.0531 0.349 CD16_Mono LOneK1K
ENSG00000184588 PDE4B 20928 sc-eQTL 4.85e-01 0.0283 0.0405 0.349 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 392855 sc-eQTL 3.76e-01 -0.0656 0.0739 0.349 CD16_Mono LOneK1K
ENSG00000116678 LEPR 392790 sc-eQTL 5.99e-03 0.248 0.0892 0.351 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 745688 sc-eQTL 7.41e-01 0.0141 0.0426 0.351 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B 20928 sc-eQTL 1.66e-01 0.0915 0.0658 0.351 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 392855 sc-eQTL 8.15e-01 0.022 0.0942 0.351 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 565223 eQTL 0.0346 0.0637 0.0301 0.00128 0.0 0.365
ENSG00000116678 LEPR 392790 eQTL 0.001 0.0747 0.0226 0.0 0.0 0.365

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116678 LEPR 392790 1.26e-06 8.78e-07 2.15e-07 3.25e-07 1.19e-07 3.08e-07 7.22e-07 2.64e-07 8.29e-07 2.85e-07 1.09e-06 5.69e-07 1.28e-06 2.1e-07 4.15e-07 4.79e-07 6.44e-07 5.05e-07 3.64e-07 3.42e-07 2.53e-07 5.86e-07 5.77e-07 3.53e-07 1.47e-06 2.4e-07 5.43e-07 4.77e-07 7e-07 8.43e-07 4.48e-07 4.34e-08 1.31e-07 2.29e-07 3.26e-07 2.96e-07 2.04e-07 1.21e-07 8.45e-08 8.85e-09 1.91e-07 9.49e-07 6.37e-08 5.89e-09 1.93e-07 4.48e-08 1.82e-07 8.25e-08 6.27e-08