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Genes within 1Mb (chr1:65693595:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 625841 sc-eQTL 7.41e-02 0.12 0.0669 0.769 B L1
ENSG00000184588 PDE4B -98919 sc-eQTL 1.39e-01 0.104 0.0701 0.769 B L1
ENSG00000213625 LEPROT 273008 sc-eQTL 8.47e-01 -0.0167 0.0861 0.769 B L1
ENSG00000162434 JAK1 625841 sc-eQTL 6.08e-02 0.123 0.0652 0.769 CD4T L1
ENSG00000184588 PDE4B -98919 sc-eQTL 4.26e-01 -0.0625 0.0783 0.769 CD4T L1
ENSG00000213625 LEPROT 273008 sc-eQTL 1.19e-01 0.16 0.102 0.769 CD4T L1
ENSG00000116678 LEPR 272943 sc-eQTL 5.10e-02 0.216 0.11 0.769 CD8T L1
ENSG00000162434 JAK1 625841 sc-eQTL 3.14e-01 0.0866 0.0858 0.769 CD8T L1
ENSG00000184588 PDE4B -98919 sc-eQTL 3.25e-01 0.0722 0.0732 0.769 CD8T L1
ENSG00000213625 LEPROT 273008 sc-eQTL 6.68e-01 0.0489 0.114 0.769 CD8T L1
ENSG00000116678 LEPR 272943 sc-eQTL 4.36e-01 -0.09 0.115 0.766 DC L1
ENSG00000162433 AK4 546046 sc-eQTL 5.91e-01 -0.0522 0.0971 0.766 DC L1
ENSG00000162434 JAK1 625841 sc-eQTL 8.86e-01 0.0116 0.0808 0.766 DC L1
ENSG00000162437 RAVER2 948500 sc-eQTL 7.95e-01 0.027 0.104 0.766 DC L1
ENSG00000184588 PDE4B -98919 sc-eQTL 6.92e-01 0.0248 0.0626 0.766 DC L1
ENSG00000213625 LEPROT 273008 sc-eQTL 5.19e-01 -0.0741 0.115 0.766 DC L1
ENSG00000285079 AL513493.1 -10367 sc-eQTL 1.19e-03 -0.198 0.0601 0.766 DC L1
ENSG00000116678 LEPR 272943 sc-eQTL 8.11e-01 0.0266 0.111 0.769 Mono L1
ENSG00000162433 AK4 546046 sc-eQTL 7.81e-01 -0.0283 0.102 0.769 Mono L1
ENSG00000162434 JAK1 625841 sc-eQTL 5.05e-01 0.0485 0.0726 0.769 Mono L1
ENSG00000184588 PDE4B -98919 sc-eQTL 8.60e-01 0.00711 0.0403 0.769 Mono L1
ENSG00000213625 LEPROT 273008 sc-eQTL 5.03e-01 0.0482 0.0719 0.769 Mono L1
ENSG00000116678 LEPR 272943 sc-eQTL 8.69e-01 -0.0181 0.11 0.77 NK L1
ENSG00000162434 JAK1 625841 sc-eQTL 4.34e-01 0.0407 0.0519 0.77 NK L1
ENSG00000184588 PDE4B -98919 sc-eQTL 5.24e-02 0.137 0.0703 0.77 NK L1
ENSG00000213625 LEPROT 273008 sc-eQTL 6.74e-01 -0.05 0.119 0.77 NK L1
ENSG00000162434 JAK1 625841 sc-eQTL 1.23e-01 -0.113 0.0732 0.769 Other_T L1
ENSG00000162437 RAVER2 948500 sc-eQTL 2.71e-01 -0.118 0.107 0.769 Other_T L1
ENSG00000184588 PDE4B -98919 sc-eQTL 6.16e-01 0.0401 0.0799 0.769 Other_T L1
ENSG00000213625 LEPROT 273008 sc-eQTL 6.74e-01 0.0487 0.116 0.769 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 625841 sc-eQTL 4.93e-01 -0.0828 0.121 0.791 B_Activated L2
ENSG00000184588 PDE4B -98919 sc-eQTL 2.03e-02 0.221 0.0943 0.791 B_Activated L2
ENSG00000213625 LEPROT 273008 sc-eQTL 2.27e-01 0.152 0.126 0.791 B_Activated L2
ENSG00000162434 JAK1 625841 sc-eQTL 5.73e-01 0.0544 0.0963 0.77 B_Intermediate L2
ENSG00000184588 PDE4B -98919 sc-eQTL 2.18e-01 0.0968 0.0783 0.77 B_Intermediate L2
ENSG00000213625 LEPROT 273008 sc-eQTL 6.15e-01 -0.0569 0.113 0.77 B_Intermediate L2
ENSG00000162434 JAK1 625841 sc-eQTL 5.28e-01 0.0603 0.0953 0.767 B_Memory L2
ENSG00000184588 PDE4B -98919 sc-eQTL 1.22e-01 0.15 0.0969 0.767 B_Memory L2
ENSG00000213625 LEPROT 273008 sc-eQTL 9.78e-01 0.00308 0.111 0.767 B_Memory L2
ENSG00000162434 JAK1 625841 sc-eQTL 2.82e-01 0.0928 0.0861 0.769 B_Naive1 L2
ENSG00000184588 PDE4B -98919 sc-eQTL 5.46e-02 0.159 0.0825 0.769 B_Naive1 L2
ENSG00000213625 LEPROT 273008 sc-eQTL 9.44e-01 -0.00788 0.113 0.769 B_Naive1 L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.75e-01 0.122 0.0899 0.768 B_Naive2 L2
ENSG00000184588 PDE4B -98919 sc-eQTL 4.24e-02 0.144 0.0706 0.768 B_Naive2 L2
ENSG00000213625 LEPROT 273008 sc-eQTL 7.30e-01 -0.0375 0.109 0.768 B_Naive2 L2
ENSG00000162434 JAK1 625841 sc-eQTL 2.29e-01 0.126 0.104 0.77 CD4_CTL L2
ENSG00000184588 PDE4B -98919 sc-eQTL 1.11e-01 0.147 0.0921 0.77 CD4_CTL L2
ENSG00000213625 LEPROT 273008 sc-eQTL 6.44e-01 0.0556 0.12 0.77 CD4_CTL L2
ENSG00000162434 JAK1 625841 sc-eQTL 9.33e-02 0.108 0.064 0.769 CD4_Naive L2
ENSG00000184588 PDE4B -98919 sc-eQTL 3.87e-01 -0.0698 0.0805 0.769 CD4_Naive L2
ENSG00000213625 LEPROT 273008 sc-eQTL 4.10e-01 0.0862 0.104 0.769 CD4_Naive L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.62e-01 0.104 0.0737 0.769 CD4_TCM L2
ENSG00000184588 PDE4B -98919 sc-eQTL 1.19e-01 0.132 0.0844 0.769 CD4_TCM L2
ENSG00000213625 LEPROT 273008 sc-eQTL 9.49e-02 0.179 0.107 0.769 CD4_TCM L2
ENSG00000162434 JAK1 625841 sc-eQTL 7.66e-01 -0.0298 0.0999 0.769 CD4_TEM L2
ENSG00000184588 PDE4B -98919 sc-eQTL 7.24e-01 0.0327 0.0923 0.769 CD4_TEM L2
ENSG00000213625 LEPROT 273008 sc-eQTL 1.44e-01 0.173 0.118 0.769 CD4_TEM L2
ENSG00000116678 LEPR 272943 sc-eQTL 3.89e-02 0.225 0.108 0.769 CD8_CTL L2
ENSG00000162434 JAK1 625841 sc-eQTL 9.81e-01 0.00216 0.0918 0.769 CD8_CTL L2
ENSG00000184588 PDE4B -98919 sc-eQTL 4.27e-02 0.171 0.0841 0.769 CD8_CTL L2
ENSG00000213625 LEPROT 273008 sc-eQTL 7.78e-02 0.197 0.111 0.769 CD8_CTL L2
ENSG00000116678 LEPR 272943 sc-eQTL 6.88e-01 -0.0443 0.11 0.769 CD8_Naive L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.98e-01 0.118 0.0914 0.769 CD8_Naive L2
ENSG00000184588 PDE4B -98919 sc-eQTL 6.07e-01 0.0397 0.0771 0.769 CD8_Naive L2
ENSG00000213625 LEPROT 273008 sc-eQTL 2.98e-01 -0.117 0.112 0.769 CD8_Naive L2
ENSG00000116678 LEPR 272943 sc-eQTL 5.76e-01 0.0623 0.111 0.769 CD8_TCM L2
ENSG00000162434 JAK1 625841 sc-eQTL 4.36e-01 0.0753 0.0966 0.769 CD8_TCM L2
ENSG00000184588 PDE4B -98919 sc-eQTL 9.23e-01 0.0103 0.106 0.769 CD8_TCM L2
ENSG00000213625 LEPROT 273008 sc-eQTL 7.89e-01 0.0324 0.121 0.769 CD8_TCM L2
ENSG00000116678 LEPR 272943 sc-eQTL 3.40e-01 0.095 0.0993 0.769 CD8_TEM L2
ENSG00000162434 JAK1 625841 sc-eQTL 5.69e-03 0.309 0.11 0.769 CD8_TEM L2
ENSG00000184588 PDE4B -98919 sc-eQTL 1.83e-01 0.127 0.0952 0.769 CD8_TEM L2
ENSG00000213625 LEPROT 273008 sc-eQTL 3.13e-01 -0.117 0.116 0.769 CD8_TEM L2
ENSG00000162434 JAK1 625841 sc-eQTL 6.62e-01 -0.0433 0.0989 0.771 MAIT L2
ENSG00000162437 RAVER2 948500 sc-eQTL 3.81e-01 -0.0924 0.105 0.771 MAIT L2
ENSG00000184588 PDE4B -98919 sc-eQTL 2.13e-01 0.105 0.0843 0.771 MAIT L2
ENSG00000213625 LEPROT 273008 sc-eQTL 3.97e-01 0.0967 0.114 0.771 MAIT L2
ENSG00000116678 LEPR 272943 sc-eQTL 6.66e-02 -0.196 0.106 0.771 NK_CD56bright L2
ENSG00000162434 JAK1 625841 sc-eQTL 3.77e-01 -0.0647 0.0732 0.771 NK_CD56bright L2
ENSG00000184588 PDE4B -98919 sc-eQTL 1.35e-02 0.216 0.0866 0.771 NK_CD56bright L2
ENSG00000213625 LEPROT 273008 sc-eQTL 6.78e-01 -0.0501 0.12 0.771 NK_CD56bright L2
ENSG00000116678 LEPR 272943 sc-eQTL 8.78e-01 0.018 0.117 0.774 NK_CD56dim L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.16e-01 0.0961 0.0608 0.774 NK_CD56dim L2
ENSG00000184588 PDE4B -98919 sc-eQTL 7.33e-01 0.0305 0.0893 0.774 NK_CD56dim L2
ENSG00000213625 LEPROT 273008 sc-eQTL 6.03e-01 0.0644 0.124 0.774 NK_CD56dim L2
ENSG00000116678 LEPR 272943 sc-eQTL 2.03e-01 0.13 0.102 0.776 NK_HLA L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.05e-01 -0.128 0.0789 0.776 NK_HLA L2
ENSG00000184588 PDE4B -98919 sc-eQTL 2.85e-01 0.103 0.0964 0.776 NK_HLA L2
ENSG00000213625 LEPROT 273008 sc-eQTL 4.12e-01 0.101 0.123 0.776 NK_HLA L2
ENSG00000116678 LEPR 272943 sc-eQTL 8.56e-01 -0.0207 0.114 0.774 NK_cytokine L2
ENSG00000162434 JAK1 625841 sc-eQTL 9.20e-01 -0.00663 0.0661 0.774 NK_cytokine L2
ENSG00000184588 PDE4B -98919 sc-eQTL 6.21e-02 0.193 0.103 0.774 NK_cytokine L2
ENSG00000213625 LEPROT 273008 sc-eQTL 2.14e-02 -0.275 0.119 0.774 NK_cytokine L2
ENSG00000162434 JAK1 625841 sc-eQTL 5.36e-01 0.0666 0.107 0.785 PB L2
ENSG00000184588 PDE4B -98919 sc-eQTL 5.96e-01 -0.0724 0.136 0.785 PB L2
ENSG00000213625 LEPROT 273008 sc-eQTL 1.86e-01 -0.199 0.149 0.785 PB L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.48e-01 -0.107 0.0736 0.77 Pro_T L2
ENSG00000162437 RAVER2 948500 sc-eQTL 4.27e-01 -0.0775 0.0975 0.77 Pro_T L2
ENSG00000184588 PDE4B -98919 sc-eQTL 7.59e-01 0.0279 0.0908 0.77 Pro_T L2
ENSG00000213625 LEPROT 273008 sc-eQTL 9.17e-01 0.012 0.115 0.77 Pro_T L2
ENSG00000162434 JAK1 625841 sc-eQTL 6.14e-01 -0.0465 0.0919 0.769 Treg L2
ENSG00000184588 PDE4B -98919 sc-eQTL 4.80e-01 -0.0593 0.0838 0.769 Treg L2
ENSG00000213625 LEPROT 273008 sc-eQTL 7.91e-01 -0.0317 0.119 0.769 Treg L2
ENSG00000116678 LEPR 272943 sc-eQTL 4.21e-01 -0.0948 0.118 0.773 cDC L2
ENSG00000162433 AK4 546046 sc-eQTL 9.44e-01 0.00731 0.104 0.773 cDC L2
ENSG00000162434 JAK1 625841 sc-eQTL 4.71e-01 0.07 0.097 0.773 cDC L2
ENSG00000162437 RAVER2 948500 sc-eQTL 8.07e-01 0.0261 0.107 0.773 cDC L2
ENSG00000184588 PDE4B -98919 sc-eQTL 6.80e-01 0.0269 0.0652 0.773 cDC L2
ENSG00000213625 LEPROT 273008 sc-eQTL 7.91e-01 -0.0314 0.118 0.773 cDC L2
ENSG00000285079 AL513493.1 -10367 sc-eQTL 9.11e-01 0.00476 0.0425 0.773 cDC L2
ENSG00000116678 LEPR 272943 sc-eQTL 6.16e-01 0.0562 0.112 0.769 cMono_IL1B L2
ENSG00000162433 AK4 546046 sc-eQTL 6.65e-01 0.0448 0.103 0.769 cMono_IL1B L2
ENSG00000162434 JAK1 625841 sc-eQTL 6.12e-01 0.0476 0.0937 0.769 cMono_IL1B L2
ENSG00000184588 PDE4B -98919 sc-eQTL 9.07e-01 -0.00609 0.052 0.769 cMono_IL1B L2
ENSG00000213625 LEPROT 273008 sc-eQTL 5.53e-01 -0.045 0.0757 0.769 cMono_IL1B L2
ENSG00000116678 LEPR 272943 sc-eQTL 6.62e-01 -0.0485 0.111 0.769 cMono_S100A L2
ENSG00000162433 AK4 546046 sc-eQTL 6.44e-01 0.0486 0.105 0.769 cMono_S100A L2
ENSG00000162434 JAK1 625841 sc-eQTL 2.50e-01 0.112 0.0966 0.769 cMono_S100A L2
ENSG00000184588 PDE4B -98919 sc-eQTL 3.87e-01 0.0475 0.0547 0.769 cMono_S100A L2
ENSG00000213625 LEPROT 273008 sc-eQTL 9.66e-02 0.15 0.0901 0.769 cMono_S100A L2
ENSG00000162434 JAK1 625841 sc-eQTL 6.72e-01 -0.0585 0.138 0.77 gdT L2
ENSG00000162437 RAVER2 948500 sc-eQTL 5.60e-01 0.0709 0.121 0.77 gdT L2
ENSG00000184588 PDE4B -98919 sc-eQTL 5.07e-01 0.0534 0.0802 0.77 gdT L2
ENSG00000213625 LEPROT 273008 sc-eQTL 3.62e-01 0.133 0.145 0.77 gdT L2
ENSG00000116678 LEPR 272943 sc-eQTL 9.28e-01 0.0102 0.112 0.776 intMono L2
ENSG00000162433 AK4 546046 sc-eQTL 7.74e-01 -0.0303 0.105 0.776 intMono L2
ENSG00000162434 JAK1 625841 sc-eQTL 1.94e-01 -0.126 0.097 0.776 intMono L2
ENSG00000184588 PDE4B -98919 sc-eQTL 5.56e-01 0.0331 0.0562 0.776 intMono L2
ENSG00000213625 LEPROT 273008 sc-eQTL 5.66e-01 0.0539 0.0938 0.776 intMono L2
ENSG00000116678 LEPR 272943 sc-eQTL 8.94e-01 -0.0147 0.11 0.778 ncMono L2
ENSG00000162433 AK4 546046 sc-eQTL 8.09e-03 -0.258 0.0965 0.778 ncMono L2
ENSG00000162434 JAK1 625841 sc-eQTL 4.79e-02 0.157 0.0787 0.778 ncMono L2
ENSG00000184588 PDE4B -98919 sc-eQTL 8.26e-01 0.0139 0.0632 0.778 ncMono L2
ENSG00000213625 LEPROT 273008 sc-eQTL 5.16e-01 0.0733 0.113 0.778 ncMono L2
ENSG00000116678 LEPR 272943 sc-eQTL 3.09e-01 -0.114 0.111 0.763 pDC L2
ENSG00000162433 AK4 546046 sc-eQTL 4.41e-01 0.0562 0.0727 0.763 pDC L2
ENSG00000162434 JAK1 625841 sc-eQTL 8.78e-01 0.0149 0.0972 0.763 pDC L2
ENSG00000162437 RAVER2 948500 sc-eQTL 9.90e-01 0.00131 0.11 0.763 pDC L2
ENSG00000184588 PDE4B -98919 sc-eQTL 7.34e-01 -0.0288 0.0848 0.763 pDC L2
ENSG00000213625 LEPROT 273008 sc-eQTL 2.64e-01 0.135 0.12 0.763 pDC L2
ENSG00000285079 AL513493.1 -10367 sc-eQTL 3.48e-03 -0.263 0.0886 0.763 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 625841 sc-eQTL 3.76e-01 0.0763 0.086 0.769 B_Memory LOneK1K
ENSG00000184588 PDE4B -98919 sc-eQTL 9.52e-02 0.118 0.0703 0.769 B_Memory LOneK1K
ENSG00000213625 LEPROT 273008 sc-eQTL 8.89e-01 -0.0154 0.111 0.769 B_Memory LOneK1K
ENSG00000162434 JAK1 625841 sc-eQTL 1.36e-01 0.124 0.0831 0.769 B_Naive LOneK1K
ENSG00000184588 PDE4B -98919 sc-eQTL 2.02e-02 0.173 0.074 0.769 B_Naive LOneK1K
ENSG00000213625 LEPROT 273008 sc-eQTL 9.36e-01 0.00843 0.106 0.769 B_Naive LOneK1K
ENSG00000116678 LEPR 272943 sc-eQTL 7.46e-01 0.0356 0.11 0.769 CD14_Mono LOneK1K
ENSG00000162433 AK4 546046 sc-eQTL 8.42e-01 0.021 0.105 0.769 CD14_Mono LOneK1K
ENSG00000162434 JAK1 625841 sc-eQTL 6.42e-01 0.041 0.088 0.769 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -98919 sc-eQTL 5.56e-01 0.0265 0.0448 0.769 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 273008 sc-eQTL 9.93e-01 0.000617 0.0737 0.769 CD14_Mono LOneK1K
ENSG00000116678 LEPR 272943 sc-eQTL 9.62e-01 -0.00537 0.112 0.772 CD16_Mono LOneK1K
ENSG00000162433 AK4 546046 sc-eQTL 3.31e-01 -0.0984 0.101 0.772 CD16_Mono LOneK1K
ENSG00000162434 JAK1 625841 sc-eQTL 8.11e-01 0.0163 0.0682 0.772 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -98919 sc-eQTL 7.37e-01 0.0175 0.0521 0.772 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 273008 sc-eQTL 5.90e-02 0.179 0.0942 0.772 CD16_Mono LOneK1K
ENSG00000116678 LEPR 272943 sc-eQTL 9.02e-01 0.014 0.114 0.774 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 625841 sc-eQTL 3.65e-01 0.0483 0.0532 0.774 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -98919 sc-eQTL 3.46e-01 0.0779 0.0825 0.774 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 273008 sc-eQTL 4.97e-01 -0.0801 0.118 0.774 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 445376 eQTL 0.015 -0.0818 0.0336 0.00153 0.0 0.26
ENSG00000116678 LEPR 272943 eQTL 0.389 -0.0219 0.0254 0.00764 0.00446 0.26
ENSG00000213625 LEPROT 273008 eQTL 0.0089 0.0555 0.0212 0.0 0.0 0.26

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116675 DNAJC6 445376 4.68e-07 2.67e-07 7.92e-08 2.62e-07 1.02e-07 1.28e-07 3.57e-07 9.07e-08 2.6e-07 1.7e-07 3.47e-07 2.11e-07 4.54e-07 8.55e-08 1.07e-07 1.39e-07 1.17e-07 2.87e-07 1.27e-07 7.29e-08 1.65e-07 2.48e-07 2.56e-07 7.36e-08 3.7e-07 2e-07 1.39e-07 1.69e-07 2.03e-07 2.97e-07 1.95e-07 5.38e-08 4.93e-08 1.17e-07 9.25e-08 5.32e-08 8.75e-08 5.36e-08 6.08e-08 7.89e-08 4.9e-08 2.8e-07 3.31e-08 1.74e-08 8.06e-08 8.42e-09 9.38e-08 0.0 5.52e-08