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Genes within 1Mb (chr1:65677200:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 609446 sc-eQTL 8.61e-02 0.12 0.0697 0.786 B L1
ENSG00000184588 PDE4B -115314 sc-eQTL 2.43e-01 0.0854 0.073 0.786 B L1
ENSG00000213625 LEPROT 256613 sc-eQTL 9.64e-01 0.00407 0.0896 0.786 B L1
ENSG00000162434 JAK1 609446 sc-eQTL 2.10e-01 0.0853 0.0679 0.786 CD4T L1
ENSG00000184588 PDE4B -115314 sc-eQTL 9.67e-01 0.00333 0.0813 0.786 CD4T L1
ENSG00000213625 LEPROT 256613 sc-eQTL 8.87e-02 0.181 0.106 0.786 CD4T L1
ENSG00000116678 LEPR 256548 sc-eQTL 7.88e-02 0.201 0.114 0.786 CD8T L1
ENSG00000162434 JAK1 609446 sc-eQTL 4.66e-01 0.0647 0.0886 0.786 CD8T L1
ENSG00000184588 PDE4B -115314 sc-eQTL 2.10e-01 0.0949 0.0755 0.786 CD8T L1
ENSG00000213625 LEPROT 256613 sc-eQTL 4.04e-01 0.0981 0.117 0.786 CD8T L1
ENSG00000116678 LEPR 256548 sc-eQTL 7.27e-01 -0.042 0.12 0.784 DC L1
ENSG00000162433 AK4 529651 sc-eQTL 7.22e-01 -0.0359 0.101 0.784 DC L1
ENSG00000162434 JAK1 609446 sc-eQTL 4.53e-01 -0.063 0.0838 0.784 DC L1
ENSG00000162437 RAVER2 932105 sc-eQTL 7.11e-01 0.0399 0.107 0.784 DC L1
ENSG00000184588 PDE4B -115314 sc-eQTL 5.36e-01 0.0403 0.065 0.784 DC L1
ENSG00000213625 LEPROT 256613 sc-eQTL 9.37e-01 0.00942 0.119 0.784 DC L1
ENSG00000285079 AL513493.1 -26762 sc-eQTL 1.07e-03 -0.207 0.0624 0.784 DC L1
ENSG00000116678 LEPR 256548 sc-eQTL 7.20e-01 0.0409 0.114 0.786 Mono L1
ENSG00000162433 AK4 529651 sc-eQTL 8.51e-01 -0.0196 0.104 0.786 Mono L1
ENSG00000162434 JAK1 609446 sc-eQTL 6.31e-01 0.0357 0.0742 0.786 Mono L1
ENSG00000184588 PDE4B -115314 sc-eQTL 9.97e-01 -0.000175 0.0411 0.786 Mono L1
ENSG00000213625 LEPROT 256613 sc-eQTL 7.58e-01 0.0227 0.0735 0.786 Mono L1
ENSG00000116678 LEPR 256548 sc-eQTL 9.27e-01 0.0103 0.113 0.788 NK L1
ENSG00000162434 JAK1 609446 sc-eQTL 6.62e-01 0.0233 0.0532 0.788 NK L1
ENSG00000184588 PDE4B -115314 sc-eQTL 8.97e-02 0.123 0.0722 0.788 NK L1
ENSG00000213625 LEPROT 256613 sc-eQTL 6.19e-01 -0.0605 0.121 0.788 NK L1
ENSG00000162434 JAK1 609446 sc-eQTL 5.10e-01 -0.05 0.0758 0.786 Other_T L1
ENSG00000162437 RAVER2 932105 sc-eQTL 1.95e-01 -0.143 0.11 0.786 Other_T L1
ENSG00000184588 PDE4B -115314 sc-eQTL 5.44e-01 0.0501 0.0824 0.786 Other_T L1
ENSG00000213625 LEPROT 256613 sc-eQTL 9.40e-01 -0.00898 0.119 0.786 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 609446 sc-eQTL 6.79e-01 -0.0529 0.128 0.809 B_Activated L2
ENSG00000184588 PDE4B -115314 sc-eQTL 6.19e-02 0.189 0.1 0.809 B_Activated L2
ENSG00000213625 LEPROT 256613 sc-eQTL 3.10e-01 0.136 0.133 0.809 B_Activated L2
ENSG00000162434 JAK1 609446 sc-eQTL 7.55e-01 0.0312 0.1 0.788 B_Intermediate L2
ENSG00000184588 PDE4B -115314 sc-eQTL 6.24e-01 0.04 0.0815 0.788 B_Intermediate L2
ENSG00000213625 LEPROT 256613 sc-eQTL 9.43e-01 0.00838 0.117 0.788 B_Intermediate L2
ENSG00000162434 JAK1 609446 sc-eQTL 5.59e-01 0.0582 0.0995 0.784 B_Memory L2
ENSG00000184588 PDE4B -115314 sc-eQTL 2.20e-01 0.125 0.101 0.784 B_Memory L2
ENSG00000213625 LEPROT 256613 sc-eQTL 7.85e-01 -0.0316 0.116 0.784 B_Memory L2
ENSG00000162434 JAK1 609446 sc-eQTL 3.97e-01 0.0758 0.0893 0.786 B_Naive1 L2
ENSG00000184588 PDE4B -115314 sc-eQTL 7.47e-02 0.153 0.0856 0.786 B_Naive1 L2
ENSG00000213625 LEPROT 256613 sc-eQTL 8.51e-01 0.0219 0.117 0.786 B_Naive1 L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.10e-01 0.118 0.0938 0.785 B_Naive2 L2
ENSG00000184588 PDE4B -115314 sc-eQTL 5.13e-02 0.144 0.0737 0.785 B_Naive2 L2
ENSG00000213625 LEPROT 256613 sc-eQTL 6.31e-01 -0.0546 0.113 0.785 B_Naive2 L2
ENSG00000162434 JAK1 609446 sc-eQTL 7.49e-01 0.035 0.109 0.789 CD4_CTL L2
ENSG00000184588 PDE4B -115314 sc-eQTL 1.21e-01 0.149 0.096 0.789 CD4_CTL L2
ENSG00000213625 LEPROT 256613 sc-eQTL 7.23e-01 -0.0444 0.125 0.789 CD4_CTL L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.15e-01 0.0827 0.0665 0.786 CD4_Naive L2
ENSG00000184588 PDE4B -115314 sc-eQTL 8.92e-01 -0.0113 0.0836 0.786 CD4_Naive L2
ENSG00000213625 LEPROT 256613 sc-eQTL 3.54e-01 0.1 0.108 0.786 CD4_Naive L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.76e-01 0.0835 0.0764 0.786 CD4_TCM L2
ENSG00000184588 PDE4B -115314 sc-eQTL 5.71e-02 0.166 0.0869 0.786 CD4_TCM L2
ENSG00000213625 LEPROT 256613 sc-eQTL 2.15e-02 0.254 0.11 0.786 CD4_TCM L2
ENSG00000162434 JAK1 609446 sc-eQTL 6.85e-01 -0.042 0.103 0.786 CD4_TEM L2
ENSG00000184588 PDE4B -115314 sc-eQTL 4.18e-01 0.0774 0.0954 0.786 CD4_TEM L2
ENSG00000213625 LEPROT 256613 sc-eQTL 1.02e-01 0.2 0.122 0.786 CD4_TEM L2
ENSG00000116678 LEPR 256548 sc-eQTL 4.04e-02 0.231 0.112 0.786 CD8_CTL L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.20e-01 0.0096 0.095 0.786 CD8_CTL L2
ENSG00000184588 PDE4B -115314 sc-eQTL 7.85e-02 0.154 0.0872 0.786 CD8_CTL L2
ENSG00000213625 LEPROT 256613 sc-eQTL 5.06e-02 0.226 0.115 0.786 CD8_CTL L2
ENSG00000116678 LEPR 256548 sc-eQTL 8.56e-01 -0.0207 0.114 0.786 CD8_Naive L2
ENSG00000162434 JAK1 609446 sc-eQTL 4.96e-01 0.0648 0.0951 0.786 CD8_Naive L2
ENSG00000184588 PDE4B -115314 sc-eQTL 3.60e-01 0.0732 0.0798 0.786 CD8_Naive L2
ENSG00000213625 LEPROT 256613 sc-eQTL 5.30e-01 -0.0733 0.116 0.786 CD8_Naive L2
ENSG00000116678 LEPR 256548 sc-eQTL 5.84e-01 0.063 0.115 0.785 CD8_TCM L2
ENSG00000162434 JAK1 609446 sc-eQTL 4.07e-01 0.0827 0.0996 0.785 CD8_TCM L2
ENSG00000184588 PDE4B -115314 sc-eQTL 8.78e-01 0.0169 0.11 0.785 CD8_TCM L2
ENSG00000213625 LEPROT 256613 sc-eQTL 6.85e-01 0.0505 0.124 0.785 CD8_TCM L2
ENSG00000116678 LEPR 256548 sc-eQTL 5.68e-01 0.0592 0.104 0.785 CD8_TEM L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.61e-02 0.259 0.116 0.785 CD8_TEM L2
ENSG00000184588 PDE4B -115314 sc-eQTL 2.19e-01 0.122 0.0993 0.785 CD8_TEM L2
ENSG00000213625 LEPROT 256613 sc-eQTL 2.71e-01 -0.133 0.12 0.785 CD8_TEM L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.51e-01 0.00627 0.102 0.788 MAIT L2
ENSG00000162437 RAVER2 932105 sc-eQTL 6.95e-01 -0.0427 0.109 0.788 MAIT L2
ENSG00000184588 PDE4B -115314 sc-eQTL 2.90e-01 0.0926 0.0872 0.788 MAIT L2
ENSG00000213625 LEPROT 256613 sc-eQTL 7.56e-01 0.0366 0.118 0.788 MAIT L2
ENSG00000116678 LEPR 256548 sc-eQTL 5.18e-02 -0.215 0.11 0.789 NK_CD56bright L2
ENSG00000162434 JAK1 609446 sc-eQTL 4.30e-01 -0.0598 0.0757 0.789 NK_CD56bright L2
ENSG00000184588 PDE4B -115314 sc-eQTL 1.15e-01 0.143 0.0905 0.789 NK_CD56bright L2
ENSG00000213625 LEPROT 256613 sc-eQTL 7.04e-01 -0.0473 0.125 0.789 NK_CD56bright L2
ENSG00000116678 LEPR 256548 sc-eQTL 9.58e-01 0.00626 0.119 0.791 NK_CD56dim L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.22e-01 0.0761 0.0621 0.791 NK_CD56dim L2
ENSG00000184588 PDE4B -115314 sc-eQTL 5.06e-01 0.0606 0.0909 0.791 NK_CD56dim L2
ENSG00000213625 LEPROT 256613 sc-eQTL 5.26e-01 0.0799 0.126 0.791 NK_CD56dim L2
ENSG00000116678 LEPR 256548 sc-eQTL 2.52e-01 0.12 0.105 0.792 NK_HLA L2
ENSG00000162434 JAK1 609446 sc-eQTL 1.50e-01 -0.118 0.0814 0.792 NK_HLA L2
ENSG00000184588 PDE4B -115314 sc-eQTL 2.56e-01 0.113 0.0993 0.792 NK_HLA L2
ENSG00000213625 LEPROT 256613 sc-eQTL 8.65e-02 0.217 0.126 0.792 NK_HLA L2
ENSG00000116678 LEPR 256548 sc-eQTL 8.50e-01 0.0221 0.116 0.791 NK_cytokine L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.54e-01 -0.00395 0.0678 0.791 NK_cytokine L2
ENSG00000184588 PDE4B -115314 sc-eQTL 6.72e-02 0.194 0.105 0.791 NK_cytokine L2
ENSG00000213625 LEPROT 256613 sc-eQTL 5.71e-03 -0.338 0.121 0.791 NK_cytokine L2
ENSG00000162434 JAK1 609446 sc-eQTL 5.46e-01 0.0659 0.109 0.8 PB L2
ENSG00000184588 PDE4B -115314 sc-eQTL 9.57e-01 0.00755 0.139 0.8 PB L2
ENSG00000213625 LEPROT 256613 sc-eQTL 3.10e-01 -0.155 0.152 0.8 PB L2
ENSG00000162434 JAK1 609446 sc-eQTL 4.33e-01 -0.0596 0.076 0.787 Pro_T L2
ENSG00000162437 RAVER2 932105 sc-eQTL 2.67e-01 -0.111 0.1 0.787 Pro_T L2
ENSG00000184588 PDE4B -115314 sc-eQTL 7.54e-01 0.0293 0.0934 0.787 Pro_T L2
ENSG00000213625 LEPROT 256613 sc-eQTL 6.45e-01 0.0546 0.118 0.787 Pro_T L2
ENSG00000162434 JAK1 609446 sc-eQTL 5.57e-01 -0.056 0.0953 0.786 Treg L2
ENSG00000184588 PDE4B -115314 sc-eQTL 8.32e-01 -0.0185 0.087 0.786 Treg L2
ENSG00000213625 LEPROT 256613 sc-eQTL 9.84e-01 0.00246 0.124 0.786 Treg L2
ENSG00000116678 LEPR 256548 sc-eQTL 4.33e-01 -0.0955 0.122 0.793 cDC L2
ENSG00000162433 AK4 529651 sc-eQTL 1.00e+00 2.22e-05 0.108 0.793 cDC L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.32e-01 0.00862 0.1 0.793 cDC L2
ENSG00000162437 RAVER2 932105 sc-eQTL 7.38e-01 0.0369 0.11 0.793 cDC L2
ENSG00000184588 PDE4B -115314 sc-eQTL 9.56e-01 0.00374 0.0674 0.793 cDC L2
ENSG00000213625 LEPROT 256613 sc-eQTL 6.15e-01 0.0616 0.122 0.793 cDC L2
ENSG00000285079 AL513493.1 -26762 sc-eQTL 9.39e-01 0.0034 0.044 0.793 cDC L2
ENSG00000116678 LEPR 256548 sc-eQTL 5.71e-01 0.065 0.115 0.786 cMono_IL1B L2
ENSG00000162433 AK4 529651 sc-eQTL 5.75e-01 0.0592 0.105 0.786 cMono_IL1B L2
ENSG00000162434 JAK1 609446 sc-eQTL 6.25e-01 0.0469 0.0959 0.786 cMono_IL1B L2
ENSG00000184588 PDE4B -115314 sc-eQTL 9.45e-01 -0.00371 0.0532 0.786 cMono_IL1B L2
ENSG00000213625 LEPROT 256613 sc-eQTL 4.90e-01 -0.0536 0.0775 0.786 cMono_IL1B L2
ENSG00000116678 LEPR 256548 sc-eQTL 4.51e-01 -0.0849 0.112 0.786 cMono_S100A L2
ENSG00000162433 AK4 529651 sc-eQTL 7.79e-01 0.0301 0.107 0.786 cMono_S100A L2
ENSG00000162434 JAK1 609446 sc-eQTL 2.56e-01 0.112 0.0983 0.786 cMono_S100A L2
ENSG00000184588 PDE4B -115314 sc-eQTL 3.93e-01 0.0477 0.0557 0.786 cMono_S100A L2
ENSG00000213625 LEPROT 256613 sc-eQTL 2.65e-01 0.103 0.0919 0.786 cMono_S100A L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.53e-01 0.00854 0.143 0.788 gdT L2
ENSG00000162437 RAVER2 932105 sc-eQTL 5.18e-01 0.0815 0.126 0.788 gdT L2
ENSG00000184588 PDE4B -115314 sc-eQTL 5.24e-01 0.0532 0.0834 0.788 gdT L2
ENSG00000213625 LEPROT 256613 sc-eQTL 5.29e-01 0.0953 0.151 0.788 gdT L2
ENSG00000116678 LEPR 256548 sc-eQTL 4.57e-01 0.086 0.115 0.791 intMono L2
ENSG00000162433 AK4 529651 sc-eQTL 4.66e-01 -0.0794 0.109 0.791 intMono L2
ENSG00000162434 JAK1 609446 sc-eQTL 1.86e-01 -0.133 0.1 0.791 intMono L2
ENSG00000184588 PDE4B -115314 sc-eQTL 4.67e-01 0.0423 0.0581 0.791 intMono L2
ENSG00000213625 LEPROT 256613 sc-eQTL 8.49e-01 -0.0185 0.097 0.791 intMono L2
ENSG00000116678 LEPR 256548 sc-eQTL 9.88e-01 -0.00167 0.113 0.792 ncMono L2
ENSG00000162433 AK4 529651 sc-eQTL 2.64e-02 -0.222 0.0993 0.792 ncMono L2
ENSG00000162434 JAK1 609446 sc-eQTL 1.08e-01 0.131 0.0808 0.792 ncMono L2
ENSG00000184588 PDE4B -115314 sc-eQTL 9.74e-01 -0.00207 0.0646 0.792 ncMono L2
ENSG00000213625 LEPROT 256613 sc-eQTL 4.58e-01 0.0858 0.115 0.792 ncMono L2
ENSG00000116678 LEPR 256548 sc-eQTL 4.31e-01 -0.0925 0.117 0.782 pDC L2
ENSG00000162433 AK4 529651 sc-eQTL 6.69e-01 0.0327 0.0765 0.782 pDC L2
ENSG00000162434 JAK1 609446 sc-eQTL 9.26e-01 -0.00945 0.102 0.782 pDC L2
ENSG00000162437 RAVER2 932105 sc-eQTL 9.07e-01 0.0135 0.115 0.782 pDC L2
ENSG00000184588 PDE4B -115314 sc-eQTL 8.88e-01 0.0126 0.0892 0.782 pDC L2
ENSG00000213625 LEPROT 256613 sc-eQTL 8.02e-02 0.221 0.126 0.782 pDC L2
ENSG00000285079 AL513493.1 -26762 sc-eQTL 3.15e-03 -0.279 0.0931 0.782 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 609446 sc-eQTL 4.40e-01 0.0692 0.0895 0.786 B_Memory LOneK1K
ENSG00000184588 PDE4B -115314 sc-eQTL 3.13e-01 0.0744 0.0735 0.786 B_Memory LOneK1K
ENSG00000213625 LEPROT 256613 sc-eQTL 9.33e-01 0.00973 0.115 0.786 B_Memory LOneK1K
ENSG00000162434 JAK1 609446 sc-eQTL 2.21e-01 0.106 0.0866 0.786 B_Naive LOneK1K
ENSG00000184588 PDE4B -115314 sc-eQTL 3.45e-02 0.164 0.0772 0.786 B_Naive LOneK1K
ENSG00000213625 LEPROT 256613 sc-eQTL 8.87e-01 0.0156 0.11 0.786 B_Naive LOneK1K
ENSG00000116678 LEPR 256548 sc-eQTL 7.71e-01 0.0326 0.112 0.786 CD14_Mono LOneK1K
ENSG00000162433 AK4 529651 sc-eQTL 8.63e-01 0.0185 0.107 0.786 CD14_Mono LOneK1K
ENSG00000162434 JAK1 609446 sc-eQTL 6.12e-01 0.0455 0.0897 0.786 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -115314 sc-eQTL 6.68e-01 0.0196 0.0458 0.786 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 256613 sc-eQTL 7.68e-01 -0.0222 0.0752 0.786 CD14_Mono LOneK1K
ENSG00000116678 LEPR 256548 sc-eQTL 6.68e-01 0.0494 0.115 0.789 CD16_Mono LOneK1K
ENSG00000162433 AK4 529651 sc-eQTL 2.85e-01 -0.111 0.104 0.789 CD16_Mono LOneK1K
ENSG00000162434 JAK1 609446 sc-eQTL 9.40e-01 0.00527 0.0701 0.789 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -115314 sc-eQTL 8.73e-01 0.0086 0.0536 0.789 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 256613 sc-eQTL 1.39e-01 0.144 0.0972 0.789 CD16_Mono LOneK1K
ENSG00000116678 LEPR 256548 sc-eQTL 7.01e-01 0.0448 0.117 0.791 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 609446 sc-eQTL 5.43e-01 0.0332 0.0546 0.791 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -115314 sc-eQTL 2.19e-01 0.104 0.0845 0.791 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 256613 sc-eQTL 4.15e-01 -0.0987 0.121 0.791 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 428981 eQTL 0.0235 -0.0777 0.0343 0.00126 0.0 0.245
ENSG00000116678 LEPR 256548 eQTL 0.56 -0.0151 0.0259 0.00767 0.00374 0.245
ENSG00000213625 LEPROT 256613 eQTL 0.00131 0.0695 0.0216 0.0 0.0 0.245

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116675 DNAJC6 428981 8.63e-07 4.97e-07 1.27e-07 3.62e-07 1.1e-07 1.97e-07 5.28e-07 1.45e-07 4.26e-07 2.39e-07 6.56e-07 3.68e-07 7.02e-07 1.17e-07 2.18e-07 2.45e-07 2.98e-07 3.95e-07 2.13e-07 1.55e-07 2.05e-07 3.87e-07 3.45e-07 1.73e-07 7.01e-07 2.54e-07 2.72e-07 2.7e-07 3.99e-07 5.28e-07 2.83e-07 6.2e-08 5.31e-08 1.42e-07 3.05e-07 1.09e-07 1.14e-07 7.93e-08 4.55e-08 2.8e-08 1.16e-07 4.82e-07 2.88e-08 1.95e-08 1.61e-07 1.29e-08 9.95e-08 1.18e-08 5.96e-08