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Genes within 1Mb (chr1:65666568:GT:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 598814 sc-eQTL 2.99e-01 0.0657 0.0631 0.752 B L1
ENSG00000184588 PDE4B -125946 sc-eQTL 4.78e-02 0.13 0.0655 0.752 B L1
ENSG00000213625 LEPROT 245981 sc-eQTL 3.55e-01 0.0748 0.0807 0.752 B L1
ENSG00000162434 JAK1 598814 sc-eQTL 3.70e-01 0.0551 0.0613 0.752 CD4T L1
ENSG00000184588 PDE4B -125946 sc-eQTL 1.84e-01 0.0973 0.073 0.752 CD4T L1
ENSG00000213625 LEPROT 245981 sc-eQTL 6.89e-02 0.174 0.0953 0.752 CD4T L1
ENSG00000116678 LEPR 245916 sc-eQTL 3.95e-02 0.214 0.103 0.752 CD8T L1
ENSG00000162434 JAK1 598814 sc-eQTL 6.79e-01 0.0335 0.0809 0.752 CD8T L1
ENSG00000184588 PDE4B -125946 sc-eQTL 3.09e-02 0.148 0.0683 0.752 CD8T L1
ENSG00000213625 LEPROT 245981 sc-eQTL 2.88e-01 0.114 0.107 0.752 CD8T L1
ENSG00000116678 LEPR 245916 sc-eQTL 2.98e-01 -0.114 0.109 0.75 DC L1
ENSG00000162433 AK4 519019 sc-eQTL 3.57e-01 -0.0847 0.0917 0.75 DC L1
ENSG00000162434 JAK1 598814 sc-eQTL 8.98e-01 -0.00981 0.0764 0.75 DC L1
ENSG00000162437 RAVER2 921473 sc-eQTL 7.82e-01 0.0272 0.0979 0.75 DC L1
ENSG00000184588 PDE4B -125946 sc-eQTL 2.85e-01 0.0634 0.0591 0.75 DC L1
ENSG00000213625 LEPROT 245981 sc-eQTL 7.01e-01 0.0416 0.108 0.75 DC L1
ENSG00000285079 AL513493.1 -37394 sc-eQTL 2.79e-04 -0.209 0.0565 0.75 DC L1
ENSG00000116678 LEPR 245916 sc-eQTL 2.79e-01 0.111 0.103 0.752 Mono L1
ENSG00000162433 AK4 519019 sc-eQTL 9.02e-01 -0.0117 0.0943 0.752 Mono L1
ENSG00000162434 JAK1 598814 sc-eQTL 7.65e-01 -0.0201 0.0672 0.752 Mono L1
ENSG00000184588 PDE4B -125946 sc-eQTL 9.37e-01 -0.00293 0.0372 0.752 Mono L1
ENSG00000213625 LEPROT 245981 sc-eQTL 3.09e-01 0.0678 0.0664 0.752 Mono L1
ENSG00000116678 LEPR 245916 sc-eQTL 6.28e-01 -0.049 0.101 0.753 NK L1
ENSG00000162434 JAK1 598814 sc-eQTL 3.84e-01 0.0415 0.0476 0.753 NK L1
ENSG00000184588 PDE4B -125946 sc-eQTL 3.56e-03 0.188 0.0637 0.753 NK L1
ENSG00000213625 LEPROT 245981 sc-eQTL 9.61e-01 0.00538 0.109 0.753 NK L1
ENSG00000162434 JAK1 598814 sc-eQTL 5.36e-01 -0.0428 0.0691 0.752 Other_T L1
ENSG00000162437 RAVER2 921473 sc-eQTL 4.85e-01 -0.0702 0.1 0.752 Other_T L1
ENSG00000184588 PDE4B -125946 sc-eQTL 1.05e-01 0.122 0.0747 0.752 Other_T L1
ENSG00000213625 LEPROT 245981 sc-eQTL 9.76e-01 -0.00332 0.109 0.752 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 598814 sc-eQTL 4.87e-01 -0.08 0.115 0.776 B_Activated L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.76e-02 0.189 0.0902 0.776 B_Activated L2
ENSG00000213625 LEPROT 245981 sc-eQTL 2.86e-01 0.128 0.12 0.776 B_Activated L2
ENSG00000162434 JAK1 598814 sc-eQTL 9.64e-01 0.00404 0.0904 0.753 B_Intermediate L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.94e-01 0.0629 0.0736 0.753 B_Intermediate L2
ENSG00000213625 LEPROT 245981 sc-eQTL 7.85e-01 0.0289 0.106 0.753 B_Intermediate L2
ENSG00000162434 JAK1 598814 sc-eQTL 8.43e-01 -0.0179 0.0899 0.75 B_Memory L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.97e-01 0.119 0.0915 0.75 B_Memory L2
ENSG00000213625 LEPROT 245981 sc-eQTL 7.20e-01 0.0375 0.105 0.75 B_Memory L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.62e-01 0.0245 0.0805 0.752 B_Naive1 L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.34e-02 0.191 0.0765 0.752 B_Naive1 L2
ENSG00000213625 LEPROT 245981 sc-eQTL 3.61e-01 0.096 0.105 0.752 B_Naive1 L2
ENSG00000162434 JAK1 598814 sc-eQTL 4.45e-01 0.0646 0.0845 0.751 B_Naive2 L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.02e-02 0.144 0.0661 0.751 B_Naive2 L2
ENSG00000213625 LEPROT 245981 sc-eQTL 9.91e-01 0.00118 0.102 0.751 B_Naive2 L2
ENSG00000162434 JAK1 598814 sc-eQTL 6.95e-01 0.039 0.0993 0.755 CD4_CTL L2
ENSG00000184588 PDE4B -125946 sc-eQTL 2.13e-02 0.201 0.0867 0.755 CD4_CTL L2
ENSG00000213625 LEPROT 245981 sc-eQTL 8.51e-01 0.0215 0.114 0.755 CD4_CTL L2
ENSG00000162434 JAK1 598814 sc-eQTL 3.39e-01 0.0576 0.0601 0.752 CD4_Naive L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.32e-01 0.0732 0.0752 0.752 CD4_Naive L2
ENSG00000213625 LEPROT 245981 sc-eQTL 2.32e-01 0.117 0.0974 0.752 CD4_Naive L2
ENSG00000162434 JAK1 598814 sc-eQTL 6.68e-01 0.0294 0.0684 0.752 CD4_TCM L2
ENSG00000184588 PDE4B -125946 sc-eQTL 2.25e-02 0.178 0.0774 0.752 CD4_TCM L2
ENSG00000213625 LEPROT 245981 sc-eQTL 2.96e-02 0.215 0.0981 0.752 CD4_TCM L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.18e-01 -0.0336 0.0928 0.752 CD4_TEM L2
ENSG00000184588 PDE4B -125946 sc-eQTL 2.20e-01 0.105 0.0854 0.752 CD4_TEM L2
ENSG00000213625 LEPROT 245981 sc-eQTL 1.20e-01 0.171 0.11 0.752 CD4_TEM L2
ENSG00000116678 LEPR 245916 sc-eQTL 9.59e-02 0.17 0.102 0.752 CD8_CTL L2
ENSG00000162434 JAK1 598814 sc-eQTL 8.19e-01 0.0196 0.0859 0.752 CD8_CTL L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.49e-02 0.192 0.0784 0.752 CD8_CTL L2
ENSG00000213625 LEPROT 245981 sc-eQTL 2.60e-02 0.233 0.104 0.752 CD8_CTL L2
ENSG00000116678 LEPR 245916 sc-eQTL 3.42e-01 0.0987 0.104 0.752 CD8_Naive L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.40e-01 0.0288 0.0865 0.752 CD8_Naive L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.89e-01 0.0956 0.0725 0.752 CD8_Naive L2
ENSG00000213625 LEPROT 245981 sc-eQTL 4.68e-01 -0.077 0.106 0.752 CD8_Naive L2
ENSG00000116678 LEPR 245916 sc-eQTL 5.38e-01 0.0651 0.105 0.755 CD8_TCM L2
ENSG00000162434 JAK1 598814 sc-eQTL 8.74e-01 0.0145 0.0917 0.755 CD8_TCM L2
ENSG00000184588 PDE4B -125946 sc-eQTL 6.19e-01 0.0503 0.101 0.755 CD8_TCM L2
ENSG00000213625 LEPROT 245981 sc-eQTL 8.18e-01 0.0263 0.114 0.755 CD8_TCM L2
ENSG00000116678 LEPR 245916 sc-eQTL 9.02e-01 -0.0117 0.0948 0.751 CD8_TEM L2
ENSG00000162434 JAK1 598814 sc-eQTL 4.21e-02 0.217 0.106 0.751 CD8_TEM L2
ENSG00000184588 PDE4B -125946 sc-eQTL 4.78e-02 0.18 0.0903 0.751 CD8_TEM L2
ENSG00000213625 LEPROT 245981 sc-eQTL 5.07e-01 -0.0733 0.11 0.751 CD8_TEM L2
ENSG00000162434 JAK1 598814 sc-eQTL 8.82e-01 -0.0138 0.0923 0.753 MAIT L2
ENSG00000162437 RAVER2 921473 sc-eQTL 9.75e-01 -0.00309 0.0984 0.753 MAIT L2
ENSG00000184588 PDE4B -125946 sc-eQTL 6.55e-02 0.145 0.0783 0.753 MAIT L2
ENSG00000213625 LEPROT 245981 sc-eQTL 9.80e-01 0.00272 0.106 0.753 MAIT L2
ENSG00000116678 LEPR 245916 sc-eQTL 7.47e-02 -0.177 0.0986 0.753 NK_CD56bright L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.56e-01 -0.0212 0.0681 0.753 NK_CD56bright L2
ENSG00000184588 PDE4B -125946 sc-eQTL 5.09e-02 0.159 0.0809 0.753 NK_CD56bright L2
ENSG00000213625 LEPROT 245981 sc-eQTL 6.54e-01 -0.0502 0.112 0.753 NK_CD56bright L2
ENSG00000116678 LEPR 245916 sc-eQTL 6.01e-01 -0.0559 0.107 0.756 NK_CD56dim L2
ENSG00000162434 JAK1 598814 sc-eQTL 2.23e-01 0.0678 0.0556 0.756 NK_CD56dim L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.63e-01 0.113 0.0811 0.756 NK_CD56dim L2
ENSG00000213625 LEPROT 245981 sc-eQTL 3.00e-01 0.117 0.113 0.756 NK_CD56dim L2
ENSG00000116678 LEPR 245916 sc-eQTL 1.67e-01 0.131 0.0942 0.758 NK_HLA L2
ENSG00000162434 JAK1 598814 sc-eQTL 9.00e-02 -0.125 0.0731 0.758 NK_HLA L2
ENSG00000184588 PDE4B -125946 sc-eQTL 8.01e-02 0.157 0.089 0.758 NK_HLA L2
ENSG00000213625 LEPROT 245981 sc-eQTL 3.38e-01 0.109 0.114 0.758 NK_HLA L2
ENSG00000116678 LEPR 245916 sc-eQTL 8.37e-01 -0.0213 0.103 0.756 NK_cytokine L2
ENSG00000162434 JAK1 598814 sc-eQTL 6.11e-01 0.0306 0.06 0.756 NK_cytokine L2
ENSG00000184588 PDE4B -125946 sc-eQTL 1.52e-02 0.227 0.0929 0.756 NK_cytokine L2
ENSG00000213625 LEPROT 245981 sc-eQTL 7.90e-02 -0.191 0.108 0.756 NK_cytokine L2
ENSG00000162434 JAK1 598814 sc-eQTL 6.35e-01 0.0465 0.0976 0.763 PB L2
ENSG00000184588 PDE4B -125946 sc-eQTL 7.66e-01 0.0369 0.124 0.763 PB L2
ENSG00000213625 LEPROT 245981 sc-eQTL 6.86e-01 -0.0555 0.137 0.763 PB L2
ENSG00000162434 JAK1 598814 sc-eQTL 5.21e-01 -0.0446 0.0694 0.754 Pro_T L2
ENSG00000162437 RAVER2 921473 sc-eQTL 9.28e-01 -0.00835 0.0917 0.754 Pro_T L2
ENSG00000184588 PDE4B -125946 sc-eQTL 9.84e-01 -0.0017 0.0853 0.754 Pro_T L2
ENSG00000213625 LEPROT 245981 sc-eQTL 4.64e-01 0.0793 0.108 0.754 Pro_T L2
ENSG00000162434 JAK1 598814 sc-eQTL 2.11e-01 -0.109 0.0867 0.752 Treg L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.92e-01 0.0681 0.0793 0.752 Treg L2
ENSG00000213625 LEPROT 245981 sc-eQTL 8.87e-01 -0.0161 0.113 0.752 Treg L2
ENSG00000116678 LEPR 245916 sc-eQTL 2.21e-01 -0.135 0.11 0.761 cDC L2
ENSG00000162433 AK4 519019 sc-eQTL 4.13e-01 -0.0798 0.0972 0.761 cDC L2
ENSG00000162434 JAK1 598814 sc-eQTL 9.54e-01 -0.00528 0.0909 0.761 cDC L2
ENSG00000162437 RAVER2 921473 sc-eQTL 7.72e-01 0.029 0.0999 0.761 cDC L2
ENSG00000184588 PDE4B -125946 sc-eQTL 9.89e-01 0.000825 0.061 0.761 cDC L2
ENSG00000213625 LEPROT 245981 sc-eQTL 4.80e-01 0.0784 0.111 0.761 cDC L2
ENSG00000285079 AL513493.1 -37394 sc-eQTL 7.83e-01 0.011 0.0398 0.761 cDC L2
ENSG00000116678 LEPR 245916 sc-eQTL 1.86e-01 0.138 0.104 0.752 cMono_IL1B L2
ENSG00000162433 AK4 519019 sc-eQTL 4.65e-01 0.0701 0.0958 0.752 cMono_IL1B L2
ENSG00000162434 JAK1 598814 sc-eQTL 9.70e-01 0.00326 0.0872 0.752 cMono_IL1B L2
ENSG00000184588 PDE4B -125946 sc-eQTL 9.19e-01 0.00494 0.0483 0.752 cMono_IL1B L2
ENSG00000213625 LEPROT 245981 sc-eQTL 8.88e-01 -0.00992 0.0705 0.752 cMono_IL1B L2
ENSG00000116678 LEPR 245916 sc-eQTL 6.98e-01 -0.0395 0.102 0.752 cMono_S100A L2
ENSG00000162433 AK4 519019 sc-eQTL 8.88e-01 0.0135 0.0963 0.752 cMono_S100A L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.82e-01 0.0246 0.0889 0.752 cMono_S100A L2
ENSG00000184588 PDE4B -125946 sc-eQTL 5.22e-01 0.0322 0.0503 0.752 cMono_S100A L2
ENSG00000213625 LEPROT 245981 sc-eQTL 8.28e-02 0.144 0.0826 0.752 cMono_S100A L2
ENSG00000162434 JAK1 598814 sc-eQTL 7.37e-01 0.0443 0.132 0.758 gdT L2
ENSG00000162437 RAVER2 921473 sc-eQTL 5.34e-01 0.072 0.116 0.758 gdT L2
ENSG00000184588 PDE4B -125946 sc-eQTL 2.29e-01 0.092 0.0762 0.758 gdT L2
ENSG00000213625 LEPROT 245981 sc-eQTL 5.85e-01 0.076 0.139 0.758 gdT L2
ENSG00000116678 LEPR 245916 sc-eQTL 3.74e-01 0.0933 0.105 0.758 intMono L2
ENSG00000162433 AK4 519019 sc-eQTL 3.91e-01 -0.0849 0.0986 0.758 intMono L2
ENSG00000162434 JAK1 598814 sc-eQTL 3.08e-02 -0.196 0.0903 0.758 intMono L2
ENSG00000184588 PDE4B -125946 sc-eQTL 3.61e-01 0.0482 0.0527 0.758 intMono L2
ENSG00000213625 LEPROT 245981 sc-eQTL 7.99e-01 0.0225 0.088 0.758 intMono L2
ENSG00000116678 LEPR 245916 sc-eQTL 5.33e-01 0.0639 0.102 0.76 ncMono L2
ENSG00000162433 AK4 519019 sc-eQTL 5.22e-02 -0.177 0.0904 0.76 ncMono L2
ENSG00000162434 JAK1 598814 sc-eQTL 1.14e-01 0.116 0.0734 0.76 ncMono L2
ENSG00000184588 PDE4B -125946 sc-eQTL 8.69e-01 0.00973 0.0587 0.76 ncMono L2
ENSG00000213625 LEPROT 245981 sc-eQTL 2.28e-01 0.126 0.104 0.76 ncMono L2
ENSG00000116678 LEPR 245916 sc-eQTL 2.22e-01 -0.133 0.108 0.757 pDC L2
ENSG00000162433 AK4 519019 sc-eQTL 8.54e-01 0.013 0.0708 0.757 pDC L2
ENSG00000162434 JAK1 598814 sc-eQTL 9.27e-01 -0.00862 0.0945 0.757 pDC L2
ENSG00000162437 RAVER2 921473 sc-eQTL 6.61e-01 0.0467 0.106 0.757 pDC L2
ENSG00000184588 PDE4B -125946 sc-eQTL 4.95e-01 0.0564 0.0824 0.757 pDC L2
ENSG00000213625 LEPROT 245981 sc-eQTL 6.16e-02 0.218 0.116 0.757 pDC L2
ENSG00000285079 AL513493.1 -37394 sc-eQTL 8.14e-04 -0.292 0.0854 0.757 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 598814 sc-eQTL 7.46e-01 0.0261 0.0803 0.752 B_Memory LOneK1K
ENSG00000184588 PDE4B -125946 sc-eQTL 1.37e-01 0.0979 0.0656 0.752 B_Memory LOneK1K
ENSG00000213625 LEPROT 245981 sc-eQTL 5.71e-01 0.0584 0.103 0.752 B_Memory LOneK1K
ENSG00000162434 JAK1 598814 sc-eQTL 5.14e-01 0.0509 0.0779 0.752 B_Naive LOneK1K
ENSG00000184588 PDE4B -125946 sc-eQTL 7.59e-03 0.186 0.0688 0.752 B_Naive LOneK1K
ENSG00000213625 LEPROT 245981 sc-eQTL 3.76e-01 0.0873 0.0984 0.752 B_Naive LOneK1K
ENSG00000116678 LEPR 245916 sc-eQTL 3.25e-01 0.1 0.102 0.752 CD14_Mono LOneK1K
ENSG00000162433 AK4 519019 sc-eQTL 8.05e-01 0.0241 0.0974 0.752 CD14_Mono LOneK1K
ENSG00000162434 JAK1 598814 sc-eQTL 8.54e-01 -0.015 0.0815 0.752 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -125946 sc-eQTL 7.03e-01 0.0159 0.0416 0.752 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 245981 sc-eQTL 6.40e-01 0.032 0.0683 0.752 CD14_Mono LOneK1K
ENSG00000116678 LEPR 245916 sc-eQTL 2.37e-01 0.123 0.104 0.754 CD16_Mono LOneK1K
ENSG00000162433 AK4 519019 sc-eQTL 4.90e-01 -0.0651 0.0942 0.754 CD16_Mono LOneK1K
ENSG00000162434 JAK1 598814 sc-eQTL 6.24e-01 -0.0312 0.0635 0.754 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -125946 sc-eQTL 7.73e-01 0.014 0.0485 0.754 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 245981 sc-eQTL 9.06e-02 0.149 0.0879 0.754 CD16_Mono LOneK1K
ENSG00000116678 LEPR 245916 sc-eQTL 8.03e-01 -0.026 0.104 0.756 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 598814 sc-eQTL 3.30e-01 0.0476 0.0488 0.756 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -125946 sc-eQTL 1.35e-02 0.186 0.0747 0.756 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 245981 sc-eQTL 8.43e-01 -0.0214 0.108 0.756 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 418349 eQTL 0.0287 -0.0733 0.0335 0.00117 0.0 0.28
ENSG00000116678 LEPR 245916 eQTL 0.362 -0.0231 0.0253 0.00747 0.00424 0.28
ENSG00000213625 LEPROT 245981 eQTL 0.0105 0.0541 0.0211 0.0 0.0 0.28

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116675 DNAJC6 418349 2.41e-06 3.22e-06 5.11e-07 3.14e-06 3.83e-07 7.41e-07 1.61e-06 6.93e-07 1.76e-06 7.14e-07 3.14e-06 1.32e-06 6.44e-06 2.15e-06 1e-06 9.36e-07 9.71e-07 1.7e-06 6.6e-07 5.67e-07 7.96e-07 1.96e-06 1.88e-06 9.78e-07 3.74e-06 9.86e-07 1.04e-06 7.74e-07 1.91e-06 2.28e-06 1.73e-06 1.55e-07 2.17e-07 1.45e-06 1.94e-06 9.67e-07 7.35e-07 2.92e-07 7.31e-07 3.46e-07 1.14e-07 5.71e-06 3.57e-07 8.1e-08 3.05e-07 3.27e-07 1.29e-07 8.66e-08 5.86e-08