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Genes within 1Mb (chr1:65649325:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581571 sc-eQTL 2.19e-01 0.0799 0.0648 0.759 B L1
ENSG00000184588 PDE4B -143189 sc-eQTL 8.14e-02 0.118 0.0674 0.759 B L1
ENSG00000213625 LEPROT 228738 sc-eQTL 4.46e-01 0.0634 0.083 0.759 B L1
ENSG00000162434 JAK1 581571 sc-eQTL 3.14e-01 0.0633 0.0627 0.759 CD4T L1
ENSG00000184588 PDE4B -143189 sc-eQTL 1.82e-01 0.0999 0.0747 0.759 CD4T L1
ENSG00000213625 LEPROT 228738 sc-eQTL 9.26e-02 0.165 0.0977 0.759 CD4T L1
ENSG00000116678 LEPR 228673 sc-eQTL 6.77e-02 0.193 0.105 0.759 CD8T L1
ENSG00000162434 JAK1 581571 sc-eQTL 6.87e-01 0.0331 0.082 0.759 CD8T L1
ENSG00000184588 PDE4B -143189 sc-eQTL 5.33e-02 0.135 0.0694 0.759 CD8T L1
ENSG00000213625 LEPROT 228738 sc-eQTL 3.47e-01 0.102 0.109 0.759 CD8T L1
ENSG00000116678 LEPR 228673 sc-eQTL 6.15e-01 -0.0565 0.112 0.757 DC L1
ENSG00000162433 AK4 501776 sc-eQTL 2.94e-01 -0.0992 0.0942 0.757 DC L1
ENSG00000162434 JAK1 581571 sc-eQTL 7.94e-01 -0.0206 0.0786 0.757 DC L1
ENSG00000162437 RAVER2 904230 sc-eQTL 9.00e-01 -0.0127 0.101 0.757 DC L1
ENSG00000184588 PDE4B -143189 sc-eQTL 1.59e-01 0.0857 0.0606 0.757 DC L1
ENSG00000213625 LEPROT 228738 sc-eQTL 6.73e-01 0.0472 0.111 0.757 DC L1
ENSG00000285079 AL513493.1 -54637 sc-eQTL 2.04e-04 -0.219 0.058 0.757 DC L1
ENSG00000116678 LEPR 228673 sc-eQTL 4.98e-01 0.0718 0.106 0.759 Mono L1
ENSG00000162433 AK4 501776 sc-eQTL 7.23e-01 0.0344 0.0969 0.759 Mono L1
ENSG00000162434 JAK1 581571 sc-eQTL 7.71e-01 -0.0201 0.0691 0.759 Mono L1
ENSG00000184588 PDE4B -143189 sc-eQTL 8.67e-01 0.00643 0.0383 0.759 Mono L1
ENSG00000213625 LEPROT 228738 sc-eQTL 5.38e-01 0.0422 0.0684 0.759 Mono L1
ENSG00000116678 LEPR 228673 sc-eQTL 6.74e-01 -0.0435 0.103 0.76 NK L1
ENSG00000162434 JAK1 581571 sc-eQTL 3.64e-01 0.0444 0.0488 0.76 NK L1
ENSG00000184588 PDE4B -143189 sc-eQTL 6.10e-03 0.182 0.0655 0.76 NK L1
ENSG00000213625 LEPROT 228738 sc-eQTL 9.95e-01 -0.000768 0.112 0.76 NK L1
ENSG00000162434 JAK1 581571 sc-eQTL 6.85e-01 -0.0286 0.0704 0.759 Other_T L1
ENSG00000162437 RAVER2 904230 sc-eQTL 3.67e-01 -0.0923 0.102 0.759 Other_T L1
ENSG00000184588 PDE4B -143189 sc-eQTL 1.62e-01 0.107 0.0762 0.759 Other_T L1
ENSG00000213625 LEPROT 228738 sc-eQTL 9.83e-01 -0.0023 0.111 0.759 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581571 sc-eQTL 7.77e-01 -0.0338 0.119 0.783 B_Activated L2
ENSG00000184588 PDE4B -143189 sc-eQTL 4.11e-02 0.192 0.0935 0.783 B_Activated L2
ENSG00000213625 LEPROT 228738 sc-eQTL 3.36e-01 0.12 0.124 0.783 B_Activated L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.91e-01 0.00106 0.0925 0.76 B_Intermediate L2
ENSG00000184588 PDE4B -143189 sc-eQTL 5.77e-01 0.0421 0.0753 0.76 B_Intermediate L2
ENSG00000213625 LEPROT 228738 sc-eQTL 6.85e-01 0.0441 0.108 0.76 B_Intermediate L2
ENSG00000162434 JAK1 581571 sc-eQTL 8.35e-01 -0.0192 0.0921 0.756 B_Memory L2
ENSG00000184588 PDE4B -143189 sc-eQTL 2.44e-01 0.11 0.0938 0.756 B_Memory L2
ENSG00000213625 LEPROT 228738 sc-eQTL 9.06e-01 0.0126 0.107 0.756 B_Memory L2
ENSG00000162434 JAK1 581571 sc-eQTL 7.92e-01 0.0219 0.0826 0.759 B_Naive1 L2
ENSG00000184588 PDE4B -143189 sc-eQTL 1.91e-02 0.186 0.0787 0.759 B_Naive1 L2
ENSG00000213625 LEPROT 228738 sc-eQTL 4.79e-01 0.0764 0.108 0.759 B_Naive1 L2
ENSG00000162434 JAK1 581571 sc-eQTL 4.65e-01 0.0634 0.0867 0.758 B_Naive2 L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.84e-02 0.142 0.0679 0.758 B_Naive2 L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.24e-01 -0.0233 0.105 0.758 B_Naive2 L2
ENSG00000162434 JAK1 581571 sc-eQTL 5.29e-01 0.0635 0.101 0.759 CD4_CTL L2
ENSG00000184588 PDE4B -143189 sc-eQTL 2.12e-02 0.205 0.0881 0.759 CD4_CTL L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.45e-01 0.0228 0.116 0.759 CD4_CTL L2
ENSG00000162434 JAK1 581571 sc-eQTL 3.24e-01 0.0607 0.0614 0.759 CD4_Naive L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.93e-01 0.0658 0.0769 0.759 CD4_Naive L2
ENSG00000213625 LEPROT 228738 sc-eQTL 2.71e-01 0.11 0.0996 0.759 CD4_Naive L2
ENSG00000162434 JAK1 581571 sc-eQTL 5.56e-01 0.0413 0.0699 0.759 CD4_TCM L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.96e-02 0.164 0.0794 0.759 CD4_TCM L2
ENSG00000213625 LEPROT 228738 sc-eQTL 3.27e-02 0.216 0.1 0.759 CD4_TCM L2
ENSG00000162434 JAK1 581571 sc-eQTL 5.90e-01 -0.051 0.0945 0.759 CD4_TEM L2
ENSG00000184588 PDE4B -143189 sc-eQTL 2.68e-01 0.0968 0.0871 0.759 CD4_TEM L2
ENSG00000213625 LEPROT 228738 sc-eQTL 1.05e-01 0.182 0.112 0.759 CD4_TEM L2
ENSG00000116678 LEPR 228673 sc-eQTL 1.30e-01 0.158 0.104 0.759 CD8_CTL L2
ENSG00000162434 JAK1 581571 sc-eQTL 8.49e-01 0.0167 0.0877 0.759 CD8_CTL L2
ENSG00000184588 PDE4B -143189 sc-eQTL 9.64e-03 0.209 0.0799 0.759 CD8_CTL L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.40e-02 0.206 0.106 0.759 CD8_CTL L2
ENSG00000116678 LEPR 228673 sc-eQTL 4.90e-01 0.0724 0.105 0.759 CD8_Naive L2
ENSG00000162434 JAK1 581571 sc-eQTL 5.83e-01 0.048 0.0873 0.759 CD8_Naive L2
ENSG00000184588 PDE4B -143189 sc-eQTL 2.80e-01 0.0793 0.0733 0.759 CD8_Naive L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.74e-01 -0.0603 0.107 0.759 CD8_Naive L2
ENSG00000116678 LEPR 228673 sc-eQTL 6.77e-01 0.0445 0.107 0.759 CD8_TCM L2
ENSG00000162434 JAK1 581571 sc-eQTL 7.21e-01 0.0332 0.0926 0.759 CD8_TCM L2
ENSG00000184588 PDE4B -143189 sc-eQTL 7.61e-01 0.031 0.102 0.759 CD8_TCM L2
ENSG00000213625 LEPROT 228738 sc-eQTL 7.57e-01 0.0358 0.116 0.759 CD8_TCM L2
ENSG00000116678 LEPR 228673 sc-eQTL 9.91e-01 0.00116 0.0978 0.758 CD8_TEM L2
ENSG00000162434 JAK1 581571 sc-eQTL 1.16e-01 0.174 0.11 0.758 CD8_TEM L2
ENSG00000184588 PDE4B -143189 sc-eQTL 6.86e-02 0.171 0.0933 0.758 CD8_TEM L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.46e-01 -0.0689 0.114 0.758 CD8_TEM L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.61e-01 -0.00459 0.0949 0.76 MAIT L2
ENSG00000162437 RAVER2 904230 sc-eQTL 7.79e-01 -0.0284 0.101 0.76 MAIT L2
ENSG00000184588 PDE4B -143189 sc-eQTL 8.18e-02 0.141 0.0805 0.76 MAIT L2
ENSG00000213625 LEPROT 228738 sc-eQTL 9.66e-01 -0.0047 0.109 0.76 MAIT L2
ENSG00000116678 LEPR 228673 sc-eQTL 3.06e-02 -0.219 0.1 0.76 NK_CD56bright L2
ENSG00000162434 JAK1 581571 sc-eQTL 6.93e-01 -0.0275 0.0696 0.76 NK_CD56bright L2
ENSG00000184588 PDE4B -143189 sc-eQTL 4.31e-02 0.168 0.0827 0.76 NK_CD56bright L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.91e-01 -0.0157 0.114 0.76 NK_CD56bright L2
ENSG00000116678 LEPR 228673 sc-eQTL 6.33e-01 -0.0523 0.109 0.763 NK_CD56dim L2
ENSG00000162434 JAK1 581571 sc-eQTL 2.27e-01 0.0691 0.057 0.763 NK_CD56dim L2
ENSG00000184588 PDE4B -143189 sc-eQTL 2.35e-01 0.0992 0.0833 0.763 NK_CD56dim L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.45e-01 0.0702 0.116 0.763 NK_CD56dim L2
ENSG00000116678 LEPR 228673 sc-eQTL 1.59e-01 0.136 0.0967 0.765 NK_HLA L2
ENSG00000162434 JAK1 581571 sc-eQTL 8.19e-02 -0.131 0.075 0.765 NK_HLA L2
ENSG00000184588 PDE4B -143189 sc-eQTL 7.56e-02 0.163 0.0913 0.765 NK_HLA L2
ENSG00000213625 LEPROT 228738 sc-eQTL 1.81e-01 0.157 0.117 0.765 NK_HLA L2
ENSG00000116678 LEPR 228673 sc-eQTL 9.01e-01 0.0132 0.106 0.763 NK_cytokine L2
ENSG00000162434 JAK1 581571 sc-eQTL 6.88e-01 0.0247 0.0615 0.763 NK_cytokine L2
ENSG00000184588 PDE4B -143189 sc-eQTL 9.89e-03 0.247 0.095 0.763 NK_cytokine L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.37e-02 -0.193 0.111 0.763 NK_cytokine L2
ENSG00000162434 JAK1 581571 sc-eQTL 6.57e-01 0.0465 0.104 0.774 PB L2
ENSG00000184588 PDE4B -143189 sc-eQTL 8.98e-01 0.017 0.133 0.774 PB L2
ENSG00000213625 LEPROT 228738 sc-eQTL 7.63e-01 -0.0441 0.146 0.774 PB L2
ENSG00000162434 JAK1 581571 sc-eQTL 5.13e-01 -0.0459 0.0701 0.759 Pro_T L2
ENSG00000162437 RAVER2 904230 sc-eQTL 7.90e-01 -0.0247 0.0926 0.759 Pro_T L2
ENSG00000184588 PDE4B -143189 sc-eQTL 8.10e-01 -0.0207 0.0861 0.759 Pro_T L2
ENSG00000213625 LEPROT 228738 sc-eQTL 4.69e-01 0.0792 0.109 0.759 Pro_T L2
ENSG00000162434 JAK1 581571 sc-eQTL 2.95e-01 -0.0936 0.0891 0.759 Treg L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.14e-01 0.082 0.0813 0.759 Treg L2
ENSG00000213625 LEPROT 228738 sc-eQTL 7.19e-01 -0.0417 0.116 0.759 Treg L2
ENSG00000116678 LEPR 228673 sc-eQTL 5.44e-01 -0.0691 0.114 0.766 cDC L2
ENSG00000162433 AK4 501776 sc-eQTL 3.20e-01 -0.0999 0.1 0.766 cDC L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.82e-01 -0.00206 0.0937 0.766 cDC L2
ENSG00000162437 RAVER2 904230 sc-eQTL 9.93e-01 0.000874 0.103 0.766 cDC L2
ENSG00000184588 PDE4B -143189 sc-eQTL 7.85e-01 0.0172 0.0629 0.766 cDC L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.59e-01 0.0668 0.114 0.766 cDC L2
ENSG00000285079 AL513493.1 -54637 sc-eQTL 7.93e-01 0.0108 0.041 0.766 cDC L2
ENSG00000116678 LEPR 228673 sc-eQTL 2.40e-01 0.126 0.107 0.759 cMono_IL1B L2
ENSG00000162433 AK4 501776 sc-eQTL 2.09e-01 0.124 0.0984 0.759 cMono_IL1B L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.74e-01 0.00292 0.0898 0.759 cMono_IL1B L2
ENSG00000184588 PDE4B -143189 sc-eQTL 7.14e-01 0.0183 0.0498 0.759 cMono_IL1B L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.00e-01 -0.0184 0.0725 0.759 cMono_IL1B L2
ENSG00000116678 LEPR 228673 sc-eQTL 5.10e-01 -0.0686 0.104 0.759 cMono_S100A L2
ENSG00000162433 AK4 501776 sc-eQTL 7.16e-01 0.036 0.0988 0.759 cMono_S100A L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.39e-01 0.00697 0.0912 0.759 cMono_S100A L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.57e-01 0.0475 0.0515 0.759 cMono_S100A L2
ENSG00000213625 LEPROT 228738 sc-eQTL 1.04e-01 0.138 0.0848 0.759 cMono_S100A L2
ENSG00000162434 JAK1 581571 sc-eQTL 8.85e-01 0.0193 0.133 0.764 gdT L2
ENSG00000162437 RAVER2 904230 sc-eQTL 4.92e-01 0.0806 0.117 0.764 gdT L2
ENSG00000184588 PDE4B -143189 sc-eQTL 3.50e-01 0.0725 0.0773 0.764 gdT L2
ENSG00000213625 LEPROT 228738 sc-eQTL 6.81e-01 0.0577 0.14 0.764 gdT L2
ENSG00000116678 LEPR 228673 sc-eQTL 4.47e-01 0.0813 0.107 0.764 intMono L2
ENSG00000162433 AK4 501776 sc-eQTL 3.76e-01 -0.089 0.1 0.764 intMono L2
ENSG00000162434 JAK1 581571 sc-eQTL 2.59e-02 -0.206 0.0919 0.764 intMono L2
ENSG00000184588 PDE4B -143189 sc-eQTL 6.20e-01 0.0267 0.0537 0.764 intMono L2
ENSG00000213625 LEPROT 228738 sc-eQTL 8.34e-01 -0.0188 0.0897 0.764 intMono L2
ENSG00000116678 LEPR 228673 sc-eQTL 6.39e-01 0.0493 0.105 0.765 ncMono L2
ENSG00000162433 AK4 501776 sc-eQTL 6.86e-02 -0.17 0.0929 0.765 ncMono L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.91e-02 0.125 0.0753 0.765 ncMono L2
ENSG00000184588 PDE4B -143189 sc-eQTL 9.43e-01 0.00428 0.0602 0.765 ncMono L2
ENSG00000213625 LEPROT 228738 sc-eQTL 3.14e-01 0.108 0.107 0.765 ncMono L2
ENSG00000116678 LEPR 228673 sc-eQTL 2.22e-01 -0.135 0.11 0.76 pDC L2
ENSG00000162433 AK4 501776 sc-eQTL 9.19e-01 -0.00739 0.0722 0.76 pDC L2
ENSG00000162434 JAK1 581571 sc-eQTL 9.97e-01 -0.00037 0.0965 0.76 pDC L2
ENSG00000162437 RAVER2 904230 sc-eQTL 7.21e-01 0.0389 0.109 0.76 pDC L2
ENSG00000184588 PDE4B -143189 sc-eQTL 4.28e-01 0.0668 0.084 0.76 pDC L2
ENSG00000213625 LEPROT 228738 sc-eQTL 5.45e-02 0.229 0.118 0.76 pDC L2
ENSG00000285079 AL513493.1 -54637 sc-eQTL 5.27e-04 -0.308 0.0869 0.76 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581571 sc-eQTL 5.99e-01 0.0434 0.0824 0.759 B_Memory LOneK1K
ENSG00000184588 PDE4B -143189 sc-eQTL 2.22e-01 0.0827 0.0675 0.759 B_Memory LOneK1K
ENSG00000213625 LEPROT 228738 sc-eQTL 5.47e-01 0.0637 0.106 0.759 B_Memory LOneK1K
ENSG00000162434 JAK1 581571 sc-eQTL 5.12e-01 0.0525 0.08 0.759 B_Naive LOneK1K
ENSG00000184588 PDE4B -143189 sc-eQTL 1.11e-02 0.181 0.0708 0.759 B_Naive LOneK1K
ENSG00000213625 LEPROT 228738 sc-eQTL 4.93e-01 0.0695 0.101 0.759 B_Naive LOneK1K
ENSG00000116678 LEPR 228673 sc-eQTL 5.04e-01 0.07 0.105 0.759 CD14_Mono LOneK1K
ENSG00000162433 AK4 501776 sc-eQTL 4.65e-01 0.0732 0.1 0.759 CD14_Mono LOneK1K
ENSG00000162434 JAK1 581571 sc-eQTL 7.65e-01 -0.025 0.0838 0.759 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -143189 sc-eQTL 4.79e-01 0.0303 0.0427 0.759 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 228738 sc-eQTL 7.96e-01 0.0182 0.0702 0.759 CD14_Mono LOneK1K
ENSG00000116678 LEPR 228673 sc-eQTL 3.04e-01 0.11 0.107 0.761 CD16_Mono LOneK1K
ENSG00000162433 AK4 501776 sc-eQTL 5.77e-01 -0.0542 0.0968 0.761 CD16_Mono LOneK1K
ENSG00000162434 JAK1 581571 sc-eQTL 8.33e-01 -0.0138 0.0652 0.761 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -143189 sc-eQTL 9.75e-01 -0.00153 0.0498 0.761 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 228738 sc-eQTL 1.99e-01 0.117 0.0906 0.761 CD16_Mono LOneK1K
ENSG00000116678 LEPR 228673 sc-eQTL 8.81e-01 -0.016 0.107 0.763 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 581571 sc-eQTL 3.18e-01 0.05 0.05 0.763 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -143189 sc-eQTL 2.14e-02 0.178 0.0767 0.763 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 228738 sc-eQTL 7.45e-01 -0.0361 0.111 0.763 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 401106 eQTL 0.0286 -0.0732 0.0334 0.00117 0.0 0.281
ENSG00000116678 LEPR 228673 eQTL 0.361 -0.0231 0.0253 0.0076 0.00431 0.281
ENSG00000213625 LEPROT 228738 eQTL 0.0085 0.0556 0.0211 0.0 0.0 0.281

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116675 DNAJC6 401106 1.26e-06 9.31e-07 3.08e-07 6.49e-07 3.44e-07 4.63e-07 1.13e-06 3.34e-07 1.2e-06 4.03e-07 1.35e-06 5.98e-07 1.67e-06 2.68e-07 5.79e-07 8.02e-07 8e-07 5.82e-07 7.55e-07 6.55e-07 6.56e-07 1.2e-06 8.1e-07 6.06e-07 1.95e-06 4.23e-07 8.75e-07 7.24e-07 1.24e-06 1.07e-06 5.45e-07 2.42e-07 2.62e-07 5.39e-07 5.2e-07 4.52e-07 5.58e-07 2.44e-07 3.35e-07 3.15e-07 2.59e-07 1.43e-06 6.13e-08 1.14e-07 2.62e-07 1.2e-07 2.35e-07 4.82e-08 1.58e-07