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Genes within 1Mb (chr1:65649064:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581310 sc-eQTL 2.62e-01 0.0729 0.0649 0.756 B L1
ENSG00000184588 PDE4B -143450 sc-eQTL 7.20e-02 0.122 0.0674 0.756 B L1
ENSG00000213625 LEPROT 228477 sc-eQTL 4.41e-01 0.0641 0.083 0.756 B L1
ENSG00000162434 JAK1 581310 sc-eQTL 3.22e-01 0.0623 0.0628 0.756 CD4T L1
ENSG00000184588 PDE4B -143450 sc-eQTL 1.95e-01 0.0972 0.0748 0.756 CD4T L1
ENSG00000213625 LEPROT 228477 sc-eQTL 5.87e-02 0.185 0.0976 0.756 CD4T L1
ENSG00000116678 LEPR 228412 sc-eQTL 6.32e-02 0.196 0.105 0.756 CD8T L1
ENSG00000162434 JAK1 581310 sc-eQTL 6.62e-01 0.0359 0.0821 0.756 CD8T L1
ENSG00000184588 PDE4B -143450 sc-eQTL 5.67e-02 0.133 0.0695 0.756 CD8T L1
ENSG00000213625 LEPROT 228477 sc-eQTL 3.49e-01 0.102 0.109 0.756 CD8T L1
ENSG00000116678 LEPR 228412 sc-eQTL 6.57e-01 -0.05 0.113 0.755 DC L1
ENSG00000162433 AK4 501515 sc-eQTL 2.08e-01 -0.119 0.0943 0.755 DC L1
ENSG00000162434 JAK1 581310 sc-eQTL 8.05e-01 -0.0195 0.0788 0.755 DC L1
ENSG00000162437 RAVER2 903969 sc-eQTL 9.95e-01 -0.000586 0.101 0.755 DC L1
ENSG00000184588 PDE4B -143450 sc-eQTL 2.05e-01 0.0773 0.0608 0.755 DC L1
ENSG00000213625 LEPROT 228477 sc-eQTL 7.81e-01 0.0311 0.112 0.755 DC L1
ENSG00000285079 AL513493.1 -54898 sc-eQTL 2.62e-04 -0.216 0.0582 0.755 DC L1
ENSG00000116678 LEPR 228412 sc-eQTL 3.51e-01 0.0987 0.106 0.756 Mono L1
ENSG00000162433 AK4 501515 sc-eQTL 9.04e-01 0.0117 0.0968 0.756 Mono L1
ENSG00000162434 JAK1 581310 sc-eQTL 8.55e-01 -0.0126 0.069 0.756 Mono L1
ENSG00000184588 PDE4B -143450 sc-eQTL 9.96e-01 -0.000194 0.0382 0.756 Mono L1
ENSG00000213625 LEPROT 228477 sc-eQTL 4.96e-01 0.0466 0.0683 0.756 Mono L1
ENSG00000116678 LEPR 228412 sc-eQTL 4.65e-01 -0.0757 0.103 0.758 NK L1
ENSG00000162434 JAK1 581310 sc-eQTL 4.33e-01 0.0384 0.0488 0.758 NK L1
ENSG00000184588 PDE4B -143450 sc-eQTL 5.44e-03 0.184 0.0655 0.758 NK L1
ENSG00000213625 LEPROT 228477 sc-eQTL 9.78e-01 0.00314 0.111 0.758 NK L1
ENSG00000162434 JAK1 581310 sc-eQTL 6.91e-01 -0.028 0.0704 0.756 Other_T L1
ENSG00000162437 RAVER2 903969 sc-eQTL 4.86e-01 -0.0714 0.102 0.756 Other_T L1
ENSG00000184588 PDE4B -143450 sc-eQTL 1.37e-01 0.114 0.0761 0.756 Other_T L1
ENSG00000213625 LEPROT 228477 sc-eQTL 9.82e-01 -0.00254 0.111 0.756 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581310 sc-eQTL 6.57e-01 -0.0531 0.119 0.781 B_Activated L2
ENSG00000184588 PDE4B -143450 sc-eQTL 4.09e-02 0.193 0.0937 0.781 B_Activated L2
ENSG00000213625 LEPROT 228477 sc-eQTL 2.51e-01 0.143 0.125 0.781 B_Activated L2
ENSG00000162434 JAK1 581310 sc-eQTL 9.94e-01 0.000739 0.0925 0.758 B_Intermediate L2
ENSG00000184588 PDE4B -143450 sc-eQTL 5.18e-01 0.0487 0.0753 0.758 B_Intermediate L2
ENSG00000213625 LEPROT 228477 sc-eQTL 7.11e-01 0.0402 0.108 0.758 B_Intermediate L2
ENSG00000162434 JAK1 581310 sc-eQTL 7.98e-01 -0.0236 0.0921 0.754 B_Memory L2
ENSG00000184588 PDE4B -143450 sc-eQTL 2.09e-01 0.118 0.0938 0.754 B_Memory L2
ENSG00000213625 LEPROT 228477 sc-eQTL 8.70e-01 0.0176 0.107 0.754 B_Memory L2
ENSG00000162434 JAK1 581310 sc-eQTL 8.44e-01 0.0163 0.0827 0.756 B_Naive1 L2
ENSG00000184588 PDE4B -143450 sc-eQTL 2.00e-02 0.184 0.0787 0.756 B_Naive1 L2
ENSG00000213625 LEPROT 228477 sc-eQTL 4.68e-01 0.0782 0.108 0.756 B_Naive1 L2
ENSG00000162434 JAK1 581310 sc-eQTL 5.15e-01 0.0565 0.0867 0.755 B_Naive2 L2
ENSG00000184588 PDE4B -143450 sc-eQTL 3.77e-02 0.142 0.0679 0.755 B_Naive2 L2
ENSG00000213625 LEPROT 228477 sc-eQTL 8.13e-01 -0.0248 0.105 0.755 B_Naive2 L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.66e-01 0.0436 0.101 0.757 CD4_CTL L2
ENSG00000184588 PDE4B -143450 sc-eQTL 2.37e-02 0.201 0.0881 0.757 CD4_CTL L2
ENSG00000213625 LEPROT 228477 sc-eQTL 9.15e-01 0.0125 0.116 0.757 CD4_CTL L2
ENSG00000162434 JAK1 581310 sc-eQTL 2.95e-01 0.0646 0.0615 0.756 CD4_Naive L2
ENSG00000184588 PDE4B -143450 sc-eQTL 4.12e-01 0.0634 0.0771 0.756 CD4_Naive L2
ENSG00000213625 LEPROT 228477 sc-eQTL 2.06e-01 0.126 0.0996 0.756 CD4_Naive L2
ENSG00000162434 JAK1 581310 sc-eQTL 5.19e-01 0.0453 0.0701 0.756 CD4_TCM L2
ENSG00000184588 PDE4B -143450 sc-eQTL 2.26e-02 0.182 0.0794 0.756 CD4_TCM L2
ENSG00000213625 LEPROT 228477 sc-eQTL 2.22e-02 0.231 0.101 0.756 CD4_TCM L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.30e-01 -0.0456 0.0947 0.756 CD4_TEM L2
ENSG00000184588 PDE4B -143450 sc-eQTL 1.80e-01 0.117 0.0872 0.756 CD4_TEM L2
ENSG00000213625 LEPROT 228477 sc-eQTL 1.23e-01 0.173 0.112 0.756 CD4_TEM L2
ENSG00000116678 LEPR 228412 sc-eQTL 1.51e-01 0.15 0.104 0.756 CD8_CTL L2
ENSG00000162434 JAK1 581310 sc-eQTL 8.49e-01 0.0167 0.0877 0.756 CD8_CTL L2
ENSG00000184588 PDE4B -143450 sc-eQTL 1.08e-02 0.206 0.0799 0.756 CD8_CTL L2
ENSG00000213625 LEPROT 228477 sc-eQTL 4.95e-02 0.21 0.106 0.756 CD8_CTL L2
ENSG00000116678 LEPR 228412 sc-eQTL 3.62e-01 0.0958 0.105 0.756 CD8_Naive L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.42e-01 0.0408 0.0876 0.756 CD8_Naive L2
ENSG00000184588 PDE4B -143450 sc-eQTL 2.26e-01 0.0891 0.0734 0.756 CD8_Naive L2
ENSG00000213625 LEPROT 228477 sc-eQTL 5.09e-01 -0.0709 0.107 0.756 CD8_Naive L2
ENSG00000116678 LEPR 228412 sc-eQTL 6.23e-01 0.0527 0.107 0.757 CD8_TCM L2
ENSG00000162434 JAK1 581310 sc-eQTL 7.73e-01 0.0268 0.0929 0.757 CD8_TCM L2
ENSG00000184588 PDE4B -143450 sc-eQTL 7.38e-01 0.0343 0.102 0.757 CD8_TCM L2
ENSG00000213625 LEPROT 228477 sc-eQTL 8.16e-01 0.0271 0.116 0.757 CD8_TCM L2
ENSG00000116678 LEPR 228412 sc-eQTL 9.35e-01 -0.00797 0.0981 0.756 CD8_TEM L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.72e-02 0.202 0.11 0.756 CD8_TEM L2
ENSG00000184588 PDE4B -143450 sc-eQTL 7.21e-02 0.169 0.0935 0.756 CD8_TEM L2
ENSG00000213625 LEPROT 228477 sc-eQTL 5.27e-01 -0.0724 0.114 0.756 CD8_TEM L2
ENSG00000162434 JAK1 581310 sc-eQTL 9.86e-01 -0.00167 0.0948 0.758 MAIT L2
ENSG00000162437 RAVER2 903969 sc-eQTL 8.61e-01 -0.0177 0.101 0.758 MAIT L2
ENSG00000184588 PDE4B -143450 sc-eQTL 7.83e-02 0.142 0.0805 0.758 MAIT L2
ENSG00000213625 LEPROT 228477 sc-eQTL 9.62e-01 -0.00524 0.109 0.758 MAIT L2
ENSG00000116678 LEPR 228412 sc-eQTL 2.85e-02 -0.221 0.1 0.758 NK_CD56bright L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.86e-01 -0.0281 0.0696 0.758 NK_CD56bright L2
ENSG00000184588 PDE4B -143450 sc-eQTL 4.85e-02 0.164 0.0827 0.758 NK_CD56bright L2
ENSG00000213625 LEPROT 228477 sc-eQTL 8.63e-01 -0.0198 0.114 0.758 NK_CD56bright L2
ENSG00000116678 LEPR 228412 sc-eQTL 4.44e-01 -0.0837 0.109 0.761 NK_CD56dim L2
ENSG00000162434 JAK1 581310 sc-eQTL 2.58e-01 0.0647 0.057 0.761 NK_CD56dim L2
ENSG00000184588 PDE4B -143450 sc-eQTL 1.96e-01 0.108 0.0832 0.761 NK_CD56dim L2
ENSG00000213625 LEPROT 228477 sc-eQTL 4.84e-01 0.081 0.116 0.761 NK_CD56dim L2
ENSG00000116678 LEPR 228412 sc-eQTL 2.16e-01 0.12 0.0967 0.763 NK_HLA L2
ENSG00000162434 JAK1 581310 sc-eQTL 1.08e-01 -0.121 0.0751 0.763 NK_HLA L2
ENSG00000184588 PDE4B -143450 sc-eQTL 7.50e-02 0.163 0.0912 0.763 NK_HLA L2
ENSG00000213625 LEPROT 228477 sc-eQTL 1.75e-01 0.159 0.117 0.763 NK_HLA L2
ENSG00000116678 LEPR 228412 sc-eQTL 9.11e-01 -0.0119 0.106 0.761 NK_cytokine L2
ENSG00000162434 JAK1 581310 sc-eQTL 7.18e-01 0.0223 0.0616 0.761 NK_cytokine L2
ENSG00000184588 PDE4B -143450 sc-eQTL 1.18e-02 0.242 0.0952 0.761 NK_cytokine L2
ENSG00000213625 LEPROT 228477 sc-eQTL 6.89e-02 -0.203 0.111 0.761 NK_cytokine L2
ENSG00000162434 JAK1 581310 sc-eQTL 6.19e-01 0.052 0.104 0.77 PB L2
ENSG00000184588 PDE4B -143450 sc-eQTL 8.60e-01 0.0233 0.132 0.77 PB L2
ENSG00000213625 LEPROT 228477 sc-eQTL 7.07e-01 -0.055 0.146 0.77 PB L2
ENSG00000162434 JAK1 581310 sc-eQTL 4.84e-01 -0.0493 0.0702 0.757 Pro_T L2
ENSG00000162437 RAVER2 903969 sc-eQTL 9.12e-01 -0.0103 0.0928 0.757 Pro_T L2
ENSG00000184588 PDE4B -143450 sc-eQTL 8.96e-01 -0.0113 0.0863 0.757 Pro_T L2
ENSG00000213625 LEPROT 228477 sc-eQTL 4.32e-01 0.086 0.109 0.757 Pro_T L2
ENSG00000162434 JAK1 581310 sc-eQTL 2.17e-01 -0.11 0.0887 0.756 Treg L2
ENSG00000184588 PDE4B -143450 sc-eQTL 3.28e-01 0.0794 0.0811 0.756 Treg L2
ENSG00000213625 LEPROT 228477 sc-eQTL 8.98e-01 -0.0148 0.115 0.756 Treg L2
ENSG00000116678 LEPR 228412 sc-eQTL 5.44e-01 -0.0691 0.114 0.766 cDC L2
ENSG00000162433 AK4 501515 sc-eQTL 3.20e-01 -0.0999 0.1 0.766 cDC L2
ENSG00000162434 JAK1 581310 sc-eQTL 9.82e-01 -0.00206 0.0937 0.766 cDC L2
ENSG00000162437 RAVER2 903969 sc-eQTL 9.93e-01 0.000874 0.103 0.766 cDC L2
ENSG00000184588 PDE4B -143450 sc-eQTL 7.85e-01 0.0172 0.0629 0.766 cDC L2
ENSG00000213625 LEPROT 228477 sc-eQTL 5.59e-01 0.0668 0.114 0.766 cDC L2
ENSG00000285079 AL513493.1 -54898 sc-eQTL 7.93e-01 0.0108 0.041 0.766 cDC L2
ENSG00000116678 LEPR 228412 sc-eQTL 1.66e-01 0.148 0.107 0.756 cMono_IL1B L2
ENSG00000162433 AK4 501515 sc-eQTL 2.77e-01 0.107 0.0983 0.756 cMono_IL1B L2
ENSG00000162434 JAK1 581310 sc-eQTL 8.87e-01 0.0127 0.0896 0.756 cMono_IL1B L2
ENSG00000184588 PDE4B -143450 sc-eQTL 8.45e-01 0.0097 0.0497 0.756 cMono_IL1B L2
ENSG00000213625 LEPROT 228477 sc-eQTL 7.74e-01 -0.0208 0.0724 0.756 cMono_IL1B L2
ENSG00000116678 LEPR 228412 sc-eQTL 5.74e-01 -0.0585 0.104 0.756 cMono_S100A L2
ENSG00000162433 AK4 501515 sc-eQTL 8.90e-01 0.0137 0.0988 0.756 cMono_S100A L2
ENSG00000162434 JAK1 581310 sc-eQTL 7.67e-01 0.0271 0.0911 0.756 cMono_S100A L2
ENSG00000184588 PDE4B -143450 sc-eQTL 5.39e-01 0.0317 0.0515 0.756 cMono_S100A L2
ENSG00000213625 LEPROT 228477 sc-eQTL 1.21e-01 0.132 0.0848 0.756 cMono_S100A L2
ENSG00000162434 JAK1 581310 sc-eQTL 7.08e-01 0.0503 0.134 0.761 gdT L2
ENSG00000162437 RAVER2 903969 sc-eQTL 4.77e-01 0.0842 0.118 0.761 gdT L2
ENSG00000184588 PDE4B -143450 sc-eQTL 3.08e-01 0.0797 0.078 0.761 gdT L2
ENSG00000213625 LEPROT 228477 sc-eQTL 7.07e-01 0.0534 0.142 0.761 gdT L2
ENSG00000116678 LEPR 228412 sc-eQTL 3.67e-01 0.0968 0.107 0.762 intMono L2
ENSG00000162433 AK4 501515 sc-eQTL 4.48e-01 -0.0768 0.101 0.762 intMono L2
ENSG00000162434 JAK1 581310 sc-eQTL 3.59e-02 -0.195 0.0925 0.762 intMono L2
ENSG00000184588 PDE4B -143450 sc-eQTL 4.70e-01 0.0391 0.054 0.762 intMono L2
ENSG00000213625 LEPROT 228477 sc-eQTL 9.87e-01 0.00151 0.0902 0.762 intMono L2
ENSG00000116678 LEPR 228412 sc-eQTL 6.39e-01 0.0493 0.105 0.765 ncMono L2
ENSG00000162433 AK4 501515 sc-eQTL 6.86e-02 -0.17 0.0929 0.765 ncMono L2
ENSG00000162434 JAK1 581310 sc-eQTL 9.91e-02 0.125 0.0753 0.765 ncMono L2
ENSG00000184588 PDE4B -143450 sc-eQTL 9.43e-01 0.00428 0.0602 0.765 ncMono L2
ENSG00000213625 LEPROT 228477 sc-eQTL 3.14e-01 0.108 0.107 0.765 ncMono L2
ENSG00000116678 LEPR 228412 sc-eQTL 2.22e-01 -0.135 0.11 0.76 pDC L2
ENSG00000162433 AK4 501515 sc-eQTL 9.19e-01 -0.00739 0.0722 0.76 pDC L2
ENSG00000162434 JAK1 581310 sc-eQTL 9.97e-01 -0.00037 0.0965 0.76 pDC L2
ENSG00000162437 RAVER2 903969 sc-eQTL 7.21e-01 0.0389 0.109 0.76 pDC L2
ENSG00000184588 PDE4B -143450 sc-eQTL 4.28e-01 0.0668 0.084 0.76 pDC L2
ENSG00000213625 LEPROT 228477 sc-eQTL 5.45e-02 0.229 0.118 0.76 pDC L2
ENSG00000285079 AL513493.1 -54898 sc-eQTL 5.27e-04 -0.308 0.0869 0.76 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 581310 sc-eQTL 6.54e-01 0.037 0.0824 0.756 B_Memory LOneK1K
ENSG00000184588 PDE4B -143450 sc-eQTL 1.96e-01 0.0875 0.0675 0.756 B_Memory LOneK1K
ENSG00000213625 LEPROT 228477 sc-eQTL 5.34e-01 0.066 0.106 0.756 B_Memory LOneK1K
ENSG00000162434 JAK1 581310 sc-eQTL 5.88e-01 0.0434 0.08 0.756 B_Naive LOneK1K
ENSG00000184588 PDE4B -143450 sc-eQTL 1.17e-02 0.18 0.0708 0.756 B_Naive LOneK1K
ENSG00000213625 LEPROT 228477 sc-eQTL 4.94e-01 0.0692 0.101 0.756 B_Naive LOneK1K
ENSG00000116678 LEPR 228412 sc-eQTL 3.61e-01 0.0954 0.104 0.756 CD14_Mono LOneK1K
ENSG00000162433 AK4 501515 sc-eQTL 6.25e-01 0.0489 0.0999 0.756 CD14_Mono LOneK1K
ENSG00000162434 JAK1 581310 sc-eQTL 9.28e-01 -0.00762 0.0837 0.756 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -143450 sc-eQTL 6.64e-01 0.0185 0.0427 0.756 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 228477 sc-eQTL 8.15e-01 0.0164 0.0701 0.756 CD14_Mono LOneK1K
ENSG00000116678 LEPR 228412 sc-eQTL 2.80e-01 0.115 0.107 0.759 CD16_Mono LOneK1K
ENSG00000162433 AK4 501515 sc-eQTL 6.14e-01 -0.0489 0.0967 0.759 CD16_Mono LOneK1K
ENSG00000162434 JAK1 581310 sc-eQTL 8.43e-01 -0.0129 0.0651 0.759 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -143450 sc-eQTL 8.09e-01 0.012 0.0498 0.759 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 228477 sc-eQTL 1.48e-01 0.131 0.0904 0.759 CD16_Mono LOneK1K
ENSG00000116678 LEPR 228412 sc-eQTL 6.56e-01 -0.0477 0.107 0.761 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 581310 sc-eQTL 3.68e-01 0.0451 0.05 0.761 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -143450 sc-eQTL 1.86e-02 0.182 0.0767 0.761 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 228477 sc-eQTL 7.53e-01 -0.0349 0.111 0.761 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 400845 eQTL 0.028 -0.0735 0.0334 0.00118 0.0 0.281
ENSG00000116678 LEPR 228412 eQTL 0.393 -0.0216 0.0252 0.00537 0.00324 0.281
ENSG00000213625 LEPROT 228477 eQTL 0.00941 0.0548 0.0211 0.0 0.0 0.281

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116675 DNAJC6 400845 7.23e-07 5.33e-07 1.05e-07 4.04e-07 9.93e-08 1.74e-07 5.28e-07 1.21e-07 3.51e-07 2.28e-07 5.29e-07 3.27e-07 6.47e-07 1.23e-07 1.78e-07 1.96e-07 2.34e-07 3.79e-07 1.77e-07 1.3e-07 2.01e-07 3.15e-07 3.3e-07 1.71e-07 6.65e-07 2.4e-07 1.87e-07 2.7e-07 3.58e-07 4.61e-07 2.43e-07 5.82e-08 4.74e-08 1.42e-07 3.03e-07 1.36e-07 8.52e-08 8.15e-08 6.58e-08 2.22e-08 8.55e-08 5.44e-07 1.67e-08 1.85e-08 1.1e-07 1.81e-08 1.1e-07 2.35e-08 6.46e-08