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Genes within 1Mb (chr1:65597658:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 529904 sc-eQTL 2.43e-01 0.0946 0.0807 0.859 B L1
ENSG00000184588 PDE4B -194856 sc-eQTL 9.43e-01 0.00608 0.0846 0.859 B L1
ENSG00000213625 LEPROT 177071 sc-eQTL 4.32e-01 0.0813 0.103 0.859 B L1
ENSG00000162434 JAK1 529904 sc-eQTL 1.43e-01 0.115 0.0779 0.859 CD4T L1
ENSG00000184588 PDE4B -194856 sc-eQTL 1.36e-01 -0.139 0.0929 0.859 CD4T L1
ENSG00000213625 LEPROT 177071 sc-eQTL 5.68e-02 0.233 0.121 0.859 CD4T L1
ENSG00000116678 LEPR 177006 sc-eQTL 5.85e-01 0.0719 0.132 0.859 CD8T L1
ENSG00000162434 JAK1 529904 sc-eQTL 1.30e-01 0.154 0.101 0.859 CD8T L1
ENSG00000184588 PDE4B -194856 sc-eQTL 6.34e-01 -0.0415 0.0871 0.859 CD8T L1
ENSG00000213625 LEPROT 177071 sc-eQTL 1.02e-01 0.221 0.134 0.859 CD8T L1
ENSG00000116678 LEPR 177006 sc-eQTL 2.23e-01 -0.165 0.135 0.856 DC L1
ENSG00000162433 AK4 450109 sc-eQTL 7.31e-01 0.0393 0.114 0.856 DC L1
ENSG00000162434 JAK1 529904 sc-eQTL 6.22e-01 -0.0469 0.095 0.856 DC L1
ENSG00000162437 RAVER2 852563 sc-eQTL 7.24e-01 0.043 0.122 0.856 DC L1
ENSG00000184588 PDE4B -194856 sc-eQTL 7.07e-01 0.0277 0.0736 0.856 DC L1
ENSG00000213625 LEPROT 177071 sc-eQTL 9.08e-02 0.227 0.134 0.856 DC L1
ENSG00000285079 AL513493.1 -106304 sc-eQTL 8.13e-02 -0.126 0.072 0.856 DC L1
ENSG00000116678 LEPR 177006 sc-eQTL 1.70e-01 0.182 0.132 0.859 Mono L1
ENSG00000162433 AK4 450109 sc-eQTL 9.59e-01 -0.00626 0.122 0.859 Mono L1
ENSG00000162434 JAK1 529904 sc-eQTL 7.82e-01 -0.024 0.0867 0.859 Mono L1
ENSG00000184588 PDE4B -194856 sc-eQTL 8.62e-01 0.00838 0.048 0.859 Mono L1
ENSG00000213625 LEPROT 177071 sc-eQTL 4.32e-01 0.0675 0.0857 0.859 Mono L1
ENSG00000116678 LEPR 177006 sc-eQTL 4.73e-01 0.0937 0.13 0.861 NK L1
ENSG00000162434 JAK1 529904 sc-eQTL 3.52e-01 0.0573 0.0615 0.861 NK L1
ENSG00000184588 PDE4B -194856 sc-eQTL 5.49e-01 -0.0504 0.084 0.861 NK L1
ENSG00000213625 LEPROT 177071 sc-eQTL 3.28e-01 0.137 0.14 0.861 NK L1
ENSG00000162434 JAK1 529904 sc-eQTL 4.57e-01 -0.0659 0.0885 0.859 Other_T L1
ENSG00000162437 RAVER2 852563 sc-eQTL 3.78e-01 0.113 0.129 0.859 Other_T L1
ENSG00000184588 PDE4B -194856 sc-eQTL 5.13e-01 -0.0629 0.0961 0.859 Other_T L1
ENSG00000213625 LEPROT 177071 sc-eQTL 9.74e-01 -0.00462 0.139 0.859 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 529904 sc-eQTL 7.53e-01 0.0478 0.151 0.878 B_Activated L2
ENSG00000184588 PDE4B -194856 sc-eQTL 6.87e-01 0.0485 0.12 0.878 B_Activated L2
ENSG00000213625 LEPROT 177071 sc-eQTL 9.24e-01 -0.0151 0.158 0.878 B_Activated L2
ENSG00000162434 JAK1 529904 sc-eQTL 7.40e-01 0.0378 0.114 0.858 B_Intermediate L2
ENSG00000184588 PDE4B -194856 sc-eQTL 5.49e-01 -0.0557 0.0929 0.858 B_Intermediate L2
ENSG00000213625 LEPROT 177071 sc-eQTL 4.88e-01 0.0928 0.134 0.858 B_Intermediate L2
ENSG00000162434 JAK1 529904 sc-eQTL 8.19e-01 -0.0265 0.116 0.858 B_Memory L2
ENSG00000184588 PDE4B -194856 sc-eQTL 4.73e-01 0.085 0.118 0.858 B_Memory L2
ENSG00000213625 LEPROT 177071 sc-eQTL 7.69e-01 0.0396 0.135 0.858 B_Memory L2
ENSG00000162434 JAK1 529904 sc-eQTL 4.88e-01 0.0712 0.103 0.859 B_Naive1 L2
ENSG00000184588 PDE4B -194856 sc-eQTL 6.55e-01 0.0443 0.0989 0.859 B_Naive1 L2
ENSG00000213625 LEPROT 177071 sc-eQTL 9.14e-01 0.0145 0.134 0.859 B_Naive1 L2
ENSG00000162434 JAK1 529904 sc-eQTL 9.09e-01 -0.0124 0.109 0.858 B_Naive2 L2
ENSG00000184588 PDE4B -194856 sc-eQTL 1.71e-01 0.117 0.0855 0.858 B_Naive2 L2
ENSG00000213625 LEPROT 177071 sc-eQTL 5.10e-01 -0.0865 0.131 0.858 B_Naive2 L2
ENSG00000162434 JAK1 529904 sc-eQTL 5.47e-01 0.0756 0.125 0.859 CD4_CTL L2
ENSG00000184588 PDE4B -194856 sc-eQTL 4.42e-01 0.0855 0.111 0.859 CD4_CTL L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.02e-01 -0.0753 0.144 0.859 CD4_CTL L2
ENSG00000162434 JAK1 529904 sc-eQTL 1.77e-01 0.103 0.0763 0.859 CD4_Naive L2
ENSG00000184588 PDE4B -194856 sc-eQTL 1.40e-01 -0.142 0.0954 0.859 CD4_Naive L2
ENSG00000213625 LEPROT 177071 sc-eQTL 1.66e-01 0.172 0.124 0.859 CD4_Naive L2
ENSG00000162434 JAK1 529904 sc-eQTL 3.05e-01 0.0911 0.0885 0.859 CD4_TCM L2
ENSG00000184588 PDE4B -194856 sc-eQTL 8.05e-01 -0.0251 0.102 0.859 CD4_TCM L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.43e-02 0.237 0.128 0.859 CD4_TCM L2
ENSG00000162434 JAK1 529904 sc-eQTL 6.88e-01 0.0479 0.119 0.859 CD4_TEM L2
ENSG00000184588 PDE4B -194856 sc-eQTL 9.07e-01 -0.0129 0.11 0.859 CD4_TEM L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.19e-02 0.263 0.14 0.859 CD4_TEM L2
ENSG00000116678 LEPR 177006 sc-eQTL 6.09e-01 0.0662 0.129 0.859 CD8_CTL L2
ENSG00000162434 JAK1 529904 sc-eQTL 4.84e-01 0.076 0.108 0.859 CD8_CTL L2
ENSG00000184588 PDE4B -194856 sc-eQTL 3.14e-01 0.101 0.1 0.859 CD8_CTL L2
ENSG00000213625 LEPROT 177071 sc-eQTL 3.29e-02 0.282 0.131 0.859 CD8_CTL L2
ENSG00000116678 LEPR 177006 sc-eQTL 7.78e-01 -0.0371 0.131 0.859 CD8_Naive L2
ENSG00000162434 JAK1 529904 sc-eQTL 1.74e-01 0.148 0.109 0.859 CD8_Naive L2
ENSG00000184588 PDE4B -194856 sc-eQTL 3.53e-01 -0.0854 0.0918 0.859 CD8_Naive L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.78e-01 0.0558 0.134 0.859 CD8_Naive L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.38e-01 -0.155 0.131 0.854 CD8_TCM L2
ENSG00000162434 JAK1 529904 sc-eQTL 8.32e-01 -0.0243 0.114 0.854 CD8_TCM L2
ENSG00000184588 PDE4B -194856 sc-eQTL 5.48e-01 -0.0755 0.125 0.854 CD8_TCM L2
ENSG00000213625 LEPROT 177071 sc-eQTL 9.54e-01 -0.00827 0.142 0.854 CD8_TCM L2
ENSG00000116678 LEPR 177006 sc-eQTL 5.43e-01 0.0744 0.122 0.861 CD8_TEM L2
ENSG00000162434 JAK1 529904 sc-eQTL 2.14e-01 0.172 0.138 0.861 CD8_TEM L2
ENSG00000184588 PDE4B -194856 sc-eQTL 8.99e-01 -0.015 0.117 0.861 CD8_TEM L2
ENSG00000213625 LEPROT 177071 sc-eQTL 9.05e-01 -0.017 0.142 0.861 CD8_TEM L2
ENSG00000162434 JAK1 529904 sc-eQTL 3.10e-01 -0.121 0.119 0.861 MAIT L2
ENSG00000162437 RAVER2 852563 sc-eQTL 2.87e-01 0.136 0.127 0.861 MAIT L2
ENSG00000184588 PDE4B -194856 sc-eQTL 5.70e-01 -0.0582 0.102 0.861 MAIT L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.63e-01 0.0602 0.138 0.861 MAIT L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.51e-01 -0.147 0.128 0.862 NK_CD56bright L2
ENSG00000162434 JAK1 529904 sc-eQTL 9.54e-01 0.00509 0.0877 0.862 NK_CD56bright L2
ENSG00000184588 PDE4B -194856 sc-eQTL 6.77e-01 0.0439 0.105 0.862 NK_CD56bright L2
ENSG00000213625 LEPROT 177071 sc-eQTL 5.54e-01 -0.0853 0.144 0.862 NK_CD56bright L2
ENSG00000116678 LEPR 177006 sc-eQTL 7.56e-01 0.043 0.138 0.862 NK_CD56dim L2
ENSG00000162434 JAK1 529904 sc-eQTL 1.22e-01 0.111 0.0718 0.862 NK_CD56dim L2
ENSG00000184588 PDE4B -194856 sc-eQTL 5.12e-01 -0.0692 0.105 0.862 NK_CD56dim L2
ENSG00000213625 LEPROT 177071 sc-eQTL 1.02e-01 0.238 0.145 0.862 NK_CD56dim L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.71e-01 0.133 0.12 0.856 NK_HLA L2
ENSG00000162434 JAK1 529904 sc-eQTL 1.56e-01 -0.133 0.0933 0.856 NK_HLA L2
ENSG00000184588 PDE4B -194856 sc-eQTL 9.81e-01 0.00268 0.114 0.856 NK_HLA L2
ENSG00000213625 LEPROT 177071 sc-eQTL 2.38e-01 0.172 0.145 0.856 NK_HLA L2
ENSG00000116678 LEPR 177006 sc-eQTL 8.82e-01 0.0196 0.132 0.862 NK_cytokine L2
ENSG00000162434 JAK1 529904 sc-eQTL 6.13e-01 0.0388 0.0766 0.862 NK_cytokine L2
ENSG00000184588 PDE4B -194856 sc-eQTL 8.42e-01 0.0241 0.12 0.862 NK_cytokine L2
ENSG00000213625 LEPROT 177071 sc-eQTL 4.47e-01 -0.106 0.139 0.862 NK_cytokine L2
ENSG00000162434 JAK1 529904 sc-eQTL 4.83e-01 0.0907 0.129 0.881 PB L2
ENSG00000184588 PDE4B -194856 sc-eQTL 7.26e-01 0.0576 0.164 0.881 PB L2
ENSG00000213625 LEPROT 177071 sc-eQTL 7.68e-01 0.0534 0.181 0.881 PB L2
ENSG00000162434 JAK1 529904 sc-eQTL 3.32e-01 -0.0854 0.0877 0.859 Pro_T L2
ENSG00000162437 RAVER2 852563 sc-eQTL 6.75e-01 0.0486 0.116 0.859 Pro_T L2
ENSG00000184588 PDE4B -194856 sc-eQTL 8.90e-01 -0.015 0.108 0.859 Pro_T L2
ENSG00000213625 LEPROT 177071 sc-eQTL 9.02e-01 0.0169 0.137 0.859 Pro_T L2
ENSG00000162434 JAK1 529904 sc-eQTL 8.55e-01 -0.02 0.109 0.859 Treg L2
ENSG00000184588 PDE4B -194856 sc-eQTL 6.29e-01 -0.0482 0.0996 0.859 Treg L2
ENSG00000213625 LEPROT 177071 sc-eQTL 4.46e-01 -0.108 0.141 0.859 Treg L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.37e-01 -0.166 0.14 0.859 cDC L2
ENSG00000162433 AK4 450109 sc-eQTL 6.86e-01 -0.0502 0.124 0.859 cDC L2
ENSG00000162434 JAK1 529904 sc-eQTL 5.26e-01 0.0736 0.116 0.859 cDC L2
ENSG00000162437 RAVER2 852563 sc-eQTL 6.94e-01 -0.0501 0.127 0.859 cDC L2
ENSG00000184588 PDE4B -194856 sc-eQTL 8.33e-01 -0.0164 0.0778 0.859 cDC L2
ENSG00000213625 LEPROT 177071 sc-eQTL 4.47e-01 0.108 0.141 0.859 cDC L2
ENSG00000285079 AL513493.1 -106304 sc-eQTL 7.88e-01 -0.0136 0.0507 0.859 cDC L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.67e-01 0.15 0.134 0.859 cMono_IL1B L2
ENSG00000162433 AK4 450109 sc-eQTL 9.82e-01 0.00282 0.124 0.859 cMono_IL1B L2
ENSG00000162434 JAK1 529904 sc-eQTL 8.02e-01 0.0284 0.113 0.859 cMono_IL1B L2
ENSG00000184588 PDE4B -194856 sc-eQTL 4.39e-01 0.0485 0.0625 0.859 cMono_IL1B L2
ENSG00000213625 LEPROT 177071 sc-eQTL 6.92e-01 0.0361 0.0912 0.859 cMono_IL1B L2
ENSG00000116678 LEPR 177006 sc-eQTL 9.11e-01 -0.0149 0.133 0.859 cMono_S100A L2
ENSG00000162433 AK4 450109 sc-eQTL 2.37e-01 0.15 0.126 0.859 cMono_S100A L2
ENSG00000162434 JAK1 529904 sc-eQTL 7.94e-01 -0.0306 0.117 0.859 cMono_S100A L2
ENSG00000184588 PDE4B -194856 sc-eQTL 5.75e-01 0.0371 0.066 0.859 cMono_S100A L2
ENSG00000213625 LEPROT 177071 sc-eQTL 2.08e-01 0.138 0.109 0.859 cMono_S100A L2
ENSG00000162434 JAK1 529904 sc-eQTL 2.54e-01 0.178 0.156 0.848 gdT L2
ENSG00000162437 RAVER2 852563 sc-eQTL 2.74e-02 0.302 0.135 0.848 gdT L2
ENSG00000184588 PDE4B -194856 sc-eQTL 7.55e-01 -0.0285 0.0912 0.848 gdT L2
ENSG00000213625 LEPROT 177071 sc-eQTL 7.46e-01 0.0536 0.165 0.848 gdT L2
ENSG00000116678 LEPR 177006 sc-eQTL 3.05e-01 0.135 0.131 0.86 intMono L2
ENSG00000162433 AK4 450109 sc-eQTL 1.32e-01 -0.186 0.123 0.86 intMono L2
ENSG00000162434 JAK1 529904 sc-eQTL 3.72e-01 -0.102 0.114 0.86 intMono L2
ENSG00000184588 PDE4B -194856 sc-eQTL 4.29e-01 0.0523 0.066 0.86 intMono L2
ENSG00000213625 LEPROT 177071 sc-eQTL 7.47e-01 -0.0356 0.11 0.86 intMono L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.60e-01 0.145 0.129 0.86 ncMono L2
ENSG00000162433 AK4 450109 sc-eQTL 1.55e-02 -0.277 0.114 0.86 ncMono L2
ENSG00000162434 JAK1 529904 sc-eQTL 6.14e-02 0.174 0.0924 0.86 ncMono L2
ENSG00000184588 PDE4B -194856 sc-eQTL 9.32e-01 0.00636 0.0741 0.86 ncMono L2
ENSG00000213625 LEPROT 177071 sc-eQTL 1.91e-01 0.173 0.132 0.86 ncMono L2
ENSG00000116678 LEPR 177006 sc-eQTL 2.86e-01 -0.144 0.135 0.856 pDC L2
ENSG00000162433 AK4 450109 sc-eQTL 3.48e-01 0.0828 0.0879 0.856 pDC L2
ENSG00000162434 JAK1 529904 sc-eQTL 9.75e-01 0.00376 0.118 0.856 pDC L2
ENSG00000162437 RAVER2 852563 sc-eQTL 9.91e-01 0.00148 0.133 0.856 pDC L2
ENSG00000184588 PDE4B -194856 sc-eQTL 7.26e-01 0.0361 0.103 0.856 pDC L2
ENSG00000213625 LEPROT 177071 sc-eQTL 2.07e-03 0.443 0.142 0.856 pDC L2
ENSG00000285079 AL513493.1 -106304 sc-eQTL 6.61e-02 -0.202 0.109 0.856 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 529904 sc-eQTL 5.01e-01 0.0693 0.103 0.859 B_Memory LOneK1K
ENSG00000184588 PDE4B -194856 sc-eQTL 8.14e-01 0.02 0.0845 0.859 B_Memory LOneK1K
ENSG00000213625 LEPROT 177071 sc-eQTL 2.61e-01 0.148 0.132 0.859 B_Memory LOneK1K
ENSG00000162434 JAK1 529904 sc-eQTL 5.63e-01 0.0575 0.0992 0.859 B_Naive LOneK1K
ENSG00000184588 PDE4B -194856 sc-eQTL 5.08e-01 0.0591 0.0891 0.859 B_Naive LOneK1K
ENSG00000213625 LEPROT 177071 sc-eQTL 9.47e-01 -0.00841 0.125 0.859 B_Naive LOneK1K
ENSG00000116678 LEPR 177006 sc-eQTL 2.99e-01 0.137 0.132 0.859 CD14_Mono LOneK1K
ENSG00000162433 AK4 450109 sc-eQTL 8.22e-01 0.0284 0.126 0.859 CD14_Mono LOneK1K
ENSG00000162434 JAK1 529904 sc-eQTL 8.15e-01 -0.0247 0.106 0.859 CD14_Mono LOneK1K
ENSG00000184588 PDE4B -194856 sc-eQTL 7.41e-01 0.0178 0.0539 0.859 CD14_Mono LOneK1K
ENSG00000213625 LEPROT 177071 sc-eQTL 6.33e-01 0.0423 0.0886 0.859 CD14_Mono LOneK1K
ENSG00000116678 LEPR 177006 sc-eQTL 1.30e-01 0.2 0.132 0.86 CD16_Mono LOneK1K
ENSG00000162433 AK4 450109 sc-eQTL 2.38e-02 -0.27 0.119 0.86 CD16_Mono LOneK1K
ENSG00000162434 JAK1 529904 sc-eQTL 7.25e-01 0.0284 0.0808 0.86 CD16_Mono LOneK1K
ENSG00000184588 PDE4B -194856 sc-eQTL 5.91e-01 0.0332 0.0617 0.86 CD16_Mono LOneK1K
ENSG00000213625 LEPROT 177071 sc-eQTL 3.00e-01 0.117 0.112 0.86 CD16_Mono LOneK1K
ENSG00000116678 LEPR 177006 sc-eQTL 4.34e-01 0.105 0.134 0.862 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 529904 sc-eQTL 1.98e-01 0.0811 0.0628 0.862 NK_CD56dim LOneK1K
ENSG00000184588 PDE4B -194856 sc-eQTL 4.92e-01 -0.0672 0.0976 0.862 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT 177071 sc-eQTL 2.91e-01 0.147 0.139 0.862 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 349439 pQTL 0.0282 -0.0399 0.0182 0.0 0.0 0.141
ENSG00000116678 LEPR 177006 pQTL 0.014 0.1 0.0408 0.00196 0.0 0.141
ENSG00000162433 AK4 450109 eQTL 0.00946 0.0807 0.031 0.0 0.0 0.142
ENSG00000213625 LEPROT 177071 eQTL 0.0151 0.0656 0.027 0.0 0.0 0.142

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 AK4 450109 7.23e-07 3.55e-07 2.88e-07 3.48e-07 1.08e-07 2.12e-07 5.2e-07 9.91e-08 5.02e-07 2.72e-07 6.56e-07 3.73e-07 6.98e-07 1.34e-07 2.77e-07 2.85e-07 2.25e-07 3.04e-07 2.42e-07 8.41e-08 1.97e-07 4.66e-07 3.07e-07 1.15e-07 1.2e-06 2.34e-07 4.34e-07 2.59e-07 2.78e-07 3.15e-07 3.56e-07 7.41e-08 4.49e-08 1.21e-07 3.34e-07 5.14e-08 1.1e-07 6.31e-08 5.4e-08 7.9e-08 2.84e-08 3.73e-07 6.04e-08 8.96e-08 7.93e-08 1.5e-08 1.08e-07 7.28e-08 6.03e-08