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Genes within 1Mb (chr1:65284508:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000158966 CACHD1 814379 sc-eQTL 5.68e-01 -0.0419 0.0732 0.05 CD4_CTL L2
ENSG00000162434 JAK1 216754 sc-eQTL 6.25e-02 -0.336 0.179 0.05 CD4_CTL L2
ENSG00000184588 PDE4B -508006 sc-eQTL 8.98e-01 0.0205 0.16 0.05 CD4_CTL L2
ENSG00000213625 LEPROT -136079 sc-eQTL 3.72e-01 0.185 0.207 0.05 CD4_CTL L2
ENSG00000116678 LEPR -136144 sc-eQTL 8.93e-01 -0.026 0.193 0.051 CD8_TCM L2
ENSG00000158966 CACHD1 814379 sc-eQTL 8.76e-01 -0.0162 0.104 0.051 CD8_TCM L2
ENSG00000162434 JAK1 216754 sc-eQTL 6.03e-01 -0.087 0.167 0.051 CD8_TCM L2
ENSG00000184588 PDE4B -508006 sc-eQTL 7.53e-01 0.0581 0.184 0.051 CD8_TCM L2
ENSG00000213625 LEPROT -136079 sc-eQTL 6.39e-01 0.0981 0.209 0.051 CD8_TCM L2
ENSG00000116678 LEPR -136144 sc-eQTL 2.27e-01 -0.212 0.175 0.05 CD8_TEM L2
ENSG00000158966 CACHD1 814379 sc-eQTL 5.06e-01 -0.028 0.042 0.05 CD8_TEM L2
ENSG00000162434 JAK1 216754 sc-eQTL 7.85e-02 -0.349 0.197 0.05 CD8_TEM L2
ENSG00000184588 PDE4B -508006 sc-eQTL 9.72e-01 -0.00586 0.169 0.05 CD8_TEM L2
ENSG00000213625 LEPROT -136079 sc-eQTL 8.53e-01 -0.0381 0.205 0.05 CD8_TEM L2
ENSG00000116678 LEPR -136144 sc-eQTL 4.53e-01 -0.149 0.198 0.054 cDC L2
ENSG00000162433 AK4 136959 sc-eQTL 1.52e-01 -0.251 0.175 0.054 cDC L2
ENSG00000162434 JAK1 216754 sc-eQTL 7.28e-01 0.057 0.164 0.054 cDC L2
ENSG00000162437 RAVER2 539413 sc-eQTL 3.45e-01 0.17 0.18 0.054 cDC L2
ENSG00000184588 PDE4B -508006 sc-eQTL 4.80e-01 0.0777 0.11 0.054 cDC L2
ENSG00000213625 LEPROT -136079 sc-eQTL 1.27e-02 -0.494 0.196 0.054 cDC L2
ENSG00000285079 AL513493.1 -419454 sc-eQTL 2.79e-01 0.0776 0.0716 0.054 cDC L2
ENSG00000162434 JAK1 216754 sc-eQTL 1.40e-01 -0.325 0.219 0.058 gdT L2
ENSG00000162437 RAVER2 539413 sc-eQTL 1.88e-01 0.256 0.193 0.058 gdT L2
ENSG00000184588 PDE4B -508006 sc-eQTL 9.19e-01 0.0131 0.129 0.058 gdT L2
ENSG00000213625 LEPROT -136079 sc-eQTL 4.80e-01 0.165 0.232 0.058 gdT L2
ENSG00000116678 LEPR -136144 sc-eQTL 1.18e-01 -0.307 0.195 0.054 pDC L2
ENSG00000162433 AK4 136959 sc-eQTL 3.89e-01 -0.11 0.128 0.054 pDC L2
ENSG00000162434 JAK1 216754 sc-eQTL 2.18e-01 0.21 0.17 0.054 pDC L2
ENSG00000162437 RAVER2 539413 sc-eQTL 1.51e-01 -0.276 0.191 0.054 pDC L2
ENSG00000184588 PDE4B -508006 sc-eQTL 9.81e-01 0.00358 0.149 0.054 pDC L2
ENSG00000213625 LEPROT -136079 sc-eQTL 4.64e-01 -0.155 0.212 0.054 pDC L2
ENSG00000285079 AL513493.1 -419454 sc-eQTL 4.02e-02 0.327 0.158 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162433 AK4 136959 eQTL 0.00514 -0.138 0.0492 0.0 0.0 0.05
ENSG00000184588 PDE4B -508006 eQTL 0.0151 0.089 0.0366 0.00106 0.0 0.05
ENSG00000226891 LINC01359 282019 eQTL 0.0907 -0.107 0.063 0.00158 0.0 0.05
ENSG00000231485 AL357078.1 216771 eQTL 0.0587 -0.166 0.0877 0.00122 0.0 0.05

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 AK4 136959 4.26e-06 4.57e-06 7.62e-07 2.44e-06 7.47e-07 1.17e-06 2.53e-06 8.99e-07 3.17e-06 1.62e-06 4.16e-06 1.74e-06 6.77e-06 1.82e-06 9.02e-07 2.11e-06 1.61e-06 2.17e-06 1.38e-06 1.05e-06 1.62e-06 3.79e-06 3.37e-06 9.91e-07 4.79e-06 1.26e-06 1.87e-06 1.63e-06 3.19e-06 3.61e-06 2.02e-06 3.21e-07 5.88e-07 1.36e-06 1.88e-06 9.91e-07 8.91e-07 4.3e-07 1.31e-06 3.75e-07 3.02e-07 5.59e-06 4.65e-07 1.51e-07 3.14e-07 3.73e-07 6.43e-07 2.43e-07 2.12e-07