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Genes within 1Mb (chr1:65044733:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116678 LEPR -375919 sc-eQTL 4.95e-01 0.138 0.201 0.052 DC L1
ENSG00000162433 AK4 -102816 sc-eQTL 6.78e-01 -0.0705 0.169 0.052 DC L1
ENSG00000162434 JAK1 -23021 sc-eQTL 2.71e-01 0.155 0.141 0.052 DC L1
ENSG00000162437 RAVER2 299638 sc-eQTL 9.78e-01 -0.00491 0.181 0.052 DC L1
ENSG00000184588 PDE4B -747781 sc-eQTL 8.10e-01 0.0264 0.109 0.052 DC L1
ENSG00000213625 LEPROT -375854 sc-eQTL 4.46e-01 0.152 0.2 0.052 DC L1
ENSG00000285079 AL513493.1 -659229 sc-eQTL 4.10e-01 0.0888 0.108 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000158966 CACHD1 574604 sc-eQTL 4.25e-02 0.159 0.0777 0.05 CD4_CTL L2
ENSG00000162434 JAK1 -23021 sc-eQTL 2.01e-01 0.248 0.193 0.05 CD4_CTL L2
ENSG00000184588 PDE4B -747781 sc-eQTL 4.10e-01 -0.141 0.171 0.05 CD4_CTL L2
ENSG00000213625 LEPROT -375854 sc-eQTL 3.63e-01 0.203 0.222 0.05 CD4_CTL L2
ENSG00000116678 LEPR -375919 sc-eQTL 2.77e-01 -0.217 0.199 0.051 CD8_TCM L2
ENSG00000158966 CACHD1 574604 sc-eQTL 2.93e-01 -0.114 0.108 0.051 CD8_TCM L2
ENSG00000162434 JAK1 -23021 sc-eQTL 7.82e-03 0.459 0.171 0.051 CD8_TCM L2
ENSG00000184588 PDE4B -747781 sc-eQTL 1.69e-01 0.263 0.19 0.051 CD8_TCM L2
ENSG00000213625 LEPROT -375854 sc-eQTL 8.35e-01 0.0453 0.217 0.051 CD8_TCM L2
ENSG00000116678 LEPR -375919 sc-eQTL 5.63e-01 0.113 0.194 0.051 NK_CD56bright L2
ENSG00000162434 JAK1 -23021 sc-eQTL 4.03e-01 -0.111 0.133 0.051 NK_CD56bright L2
ENSG00000184588 PDE4B -747781 sc-eQTL 5.30e-01 -0.101 0.16 0.051 NK_CD56bright L2
ENSG00000213625 LEPROT -375854 sc-eQTL 6.54e-01 0.0983 0.219 0.051 NK_CD56bright L2
ENSG00000162434 JAK1 -23021 sc-eQTL 9.23e-02 0.227 0.134 0.05 Pro_T L2
ENSG00000162437 RAVER2 299638 sc-eQTL 7.58e-01 0.055 0.178 0.05 Pro_T L2
ENSG00000184588 PDE4B -747781 sc-eQTL 4.56e-01 -0.124 0.165 0.05 Pro_T L2
ENSG00000213625 LEPROT -375854 sc-eQTL 1.16e-01 -0.33 0.209 0.05 Pro_T L2
ENSG00000116678 LEPR -375919 sc-eQTL 6.49e-01 0.095 0.208 0.054 cDC L2
ENSG00000162433 AK4 -102816 sc-eQTL 9.06e-01 -0.0218 0.184 0.054 cDC L2
ENSG00000162434 JAK1 -23021 sc-eQTL 2.16e-01 0.212 0.171 0.054 cDC L2
ENSG00000162437 RAVER2 299638 sc-eQTL 3.96e-01 -0.16 0.188 0.054 cDC L2
ENSG00000184588 PDE4B -747781 sc-eQTL 1.99e-01 0.148 0.115 0.054 cDC L2
ENSG00000213625 LEPROT -375854 sc-eQTL 8.19e-01 -0.0479 0.209 0.054 cDC L2
ENSG00000285079 AL513493.1 -659229 sc-eQTL 6.20e-01 -0.0374 0.0752 0.054 cDC L2
ENSG00000162434 JAK1 -23021 sc-eQTL 4.05e-01 0.207 0.248 0.052 gdT L2
ENSG00000162437 RAVER2 299638 sc-eQTL 9.59e-01 0.0112 0.219 0.052 gdT L2
ENSG00000184588 PDE4B -747781 sc-eQTL 3.60e-01 -0.133 0.144 0.052 gdT L2
ENSG00000213625 LEPROT -375854 sc-eQTL 3.74e-01 0.233 0.262 0.052 gdT L2
ENSG00000116678 LEPR -375919 sc-eQTL 4.32e-02 -0.39 0.191 0.051 intMono L2
ENSG00000162433 AK4 -102816 sc-eQTL 3.00e-01 -0.189 0.182 0.051 intMono L2
ENSG00000162434 JAK1 -23021 sc-eQTL 5.33e-01 0.105 0.168 0.051 intMono L2
ENSG00000184588 PDE4B -747781 sc-eQTL 3.99e-01 0.0821 0.0972 0.051 intMono L2
ENSG00000213625 LEPROT -375854 sc-eQTL 8.97e-01 0.0211 0.162 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000226891 LINC01359 42244 eQTL 0.000311 -0.234 0.0646 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000226891 LINC01359 42244 1.95e-05 1.38e-05 1.31e-06 7.82e-06 2.36e-06 6.33e-06 1.23e-05 1.85e-06 1.22e-05 5.49e-06 1.38e-05 6.46e-06 1.9e-05 3.78e-06 2.6e-06 6.64e-06 4.98e-06 1.16e-05 2.56e-06 2.88e-06 4.64e-06 1.18e-05 8.99e-06 3.21e-06 1.83e-05 3.72e-06 4.7e-06 3.66e-06 1.03e-05 8.95e-06 7.63e-06 6.75e-07 7.79e-07 2.67e-06 4.9e-06 1.71e-06 1.62e-06 1.29e-06 1.64e-06 9.98e-07 8.4e-07 1.48e-05 1.43e-06 1.54e-07 7.65e-07 7.62e-07 1.26e-06 5.52e-07 5.44e-07