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Genes within 1Mb (chr1:64779955:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -287799 sc-eQTL 6.92e-01 0.0234 0.0591 0.28 B L1
ENSG00000213625 LEPROT -640632 sc-eQTL 5.44e-01 -0.0458 0.0754 0.28 B L1
ENSG00000158966 CACHD1 309826 sc-eQTL 9.21e-01 0.00558 0.0561 0.28 CD4T L1
ENSG00000162434 JAK1 -287799 sc-eQTL 8.16e-01 -0.0137 0.0588 0.28 CD4T L1
ENSG00000213625 LEPROT -640632 sc-eQTL 9.34e-01 0.00757 0.092 0.28 CD4T L1
ENSG00000116678 LEPR -640697 sc-eQTL 2.27e-01 -0.117 0.0968 0.28 CD8T L1
ENSG00000158966 CACHD1 309826 sc-eQTL 3.22e-01 -0.0473 0.0477 0.28 CD8T L1
ENSG00000162434 JAK1 -287799 sc-eQTL 7.53e-01 -0.0238 0.0753 0.28 CD8T L1
ENSG00000213625 LEPROT -640632 sc-eQTL 5.00e-01 0.0674 0.0997 0.28 CD8T L1
ENSG00000116678 LEPR -640697 sc-eQTL 5.91e-01 -0.0525 0.0975 0.284 DC L1
ENSG00000162433 AK4 -367594 sc-eQTL 2.52e-01 -0.0939 0.0817 0.284 DC L1
ENSG00000162434 JAK1 -287799 sc-eQTL 4.19e-01 0.0552 0.0681 0.284 DC L1
ENSG00000162437 RAVER2 34860 sc-eQTL 8.16e-01 0.0204 0.0874 0.284 DC L1
ENSG00000213625 LEPROT -640632 sc-eQTL 5.73e-01 -0.0546 0.0966 0.284 DC L1
ENSG00000285079 AL513493.1 -924007 sc-eQTL 3.95e-01 -0.0443 0.052 0.284 DC L1
ENSG00000116678 LEPR -640697 sc-eQTL 3.81e-01 -0.0846 0.0963 0.28 Mono L1
ENSG00000162433 AK4 -367594 sc-eQTL 2.75e-01 -0.0964 0.088 0.28 Mono L1
ENSG00000162434 JAK1 -287799 sc-eQTL 1.73e-01 0.0857 0.0627 0.28 Mono L1
ENSG00000213625 LEPROT -640632 sc-eQTL 8.98e-03 0.162 0.0613 0.28 Mono L1
ENSG00000116678 LEPR -640697 sc-eQTL 7.49e-01 0.0299 0.0936 0.279 NK L1
ENSG00000162434 JAK1 -287799 sc-eQTL 5.01e-01 0.0298 0.0442 0.279 NK L1
ENSG00000213625 LEPROT -640632 sc-eQTL 4.12e-01 -0.0828 0.101 0.279 NK L1
ENSG00000162434 JAK1 -287799 sc-eQTL 2.92e-01 0.069 0.0654 0.28 Other_T L1
ENSG00000162437 RAVER2 34860 sc-eQTL 3.61e-01 -0.087 0.0951 0.28 Other_T L1
ENSG00000213625 LEPROT -640632 sc-eQTL 7.44e-01 0.0337 0.103 0.28 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -287799 sc-eQTL 2.42e-02 0.23 0.101 0.276 B_Activated L2
ENSG00000213625 LEPROT -640632 sc-eQTL 6.70e-01 -0.0457 0.107 0.276 B_Activated L2
ENSG00000162434 JAK1 -287799 sc-eQTL 6.51e-01 -0.0384 0.0849 0.281 B_Intermediate L2
ENSG00000213625 LEPROT -640632 sc-eQTL 3.04e-01 -0.102 0.0994 0.281 B_Intermediate L2
ENSG00000162434 JAK1 -287799 sc-eQTL 1.26e-02 0.215 0.0853 0.282 B_Memory L2
ENSG00000213625 LEPROT -640632 sc-eQTL 7.76e-01 0.0287 0.101 0.282 B_Memory L2
ENSG00000162434 JAK1 -287799 sc-eQTL 5.74e-01 -0.0421 0.0748 0.28 B_Naive1 L2
ENSG00000213625 LEPROT -640632 sc-eQTL 4.42e-01 -0.0751 0.0975 0.28 B_Naive1 L2
ENSG00000162434 JAK1 -287799 sc-eQTL 6.54e-01 0.0355 0.0791 0.281 B_Naive2 L2
ENSG00000213625 LEPROT -640632 sc-eQTL 7.02e-01 0.0366 0.0954 0.281 B_Naive2 L2
ENSG00000158966 CACHD1 309826 sc-eQTL 6.49e-01 -0.0175 0.0384 0.286 CD4_CTL L2
ENSG00000162434 JAK1 -287799 sc-eQTL 7.52e-01 0.0299 0.0947 0.286 CD4_CTL L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.38e-01 -0.0671 0.109 0.286 CD4_CTL L2
ENSG00000158966 CACHD1 309826 sc-eQTL 9.87e-01 0.00095 0.0564 0.28 CD4_Naive L2
ENSG00000162434 JAK1 -287799 sc-eQTL 6.92e-01 -0.0228 0.0575 0.28 CD4_Naive L2
ENSG00000213625 LEPROT -640632 sc-eQTL 9.60e-01 0.0047 0.0933 0.28 CD4_Naive L2
ENSG00000158966 CACHD1 309826 sc-eQTL 9.86e-01 0.00135 0.0791 0.28 CD4_TCM L2
ENSG00000162434 JAK1 -287799 sc-eQTL 8.35e-01 0.0135 0.0647 0.28 CD4_TCM L2
ENSG00000213625 LEPROT -640632 sc-eQTL 7.02e-01 -0.0359 0.0938 0.28 CD4_TCM L2
ENSG00000158966 CACHD1 309826 sc-eQTL 2.30e-01 0.0735 0.0611 0.28 CD4_TEM L2
ENSG00000162434 JAK1 -287799 sc-eQTL 5.04e-01 -0.0583 0.0871 0.28 CD4_TEM L2
ENSG00000213625 LEPROT -640632 sc-eQTL 4.24e-01 0.0828 0.103 0.28 CD4_TEM L2
ENSG00000116678 LEPR -640697 sc-eQTL 5.07e-02 -0.185 0.0942 0.28 CD8_CTL L2
ENSG00000158966 CACHD1 309826 sc-eQTL 4.54e-01 -0.032 0.0427 0.28 CD8_CTL L2
ENSG00000162434 JAK1 -287799 sc-eQTL 7.36e-01 0.0269 0.0798 0.28 CD8_CTL L2
ENSG00000213625 LEPROT -640632 sc-eQTL 1.27e-01 0.149 0.097 0.28 CD8_CTL L2
ENSG00000116678 LEPR -640697 sc-eQTL 7.88e-01 0.0261 0.0968 0.28 CD8_Naive L2
ENSG00000158966 CACHD1 309826 sc-eQTL 2.92e-01 -0.0707 0.0669 0.28 CD8_Naive L2
ENSG00000162434 JAK1 -287799 sc-eQTL 2.03e-01 -0.103 0.0804 0.28 CD8_Naive L2
ENSG00000213625 LEPROT -640632 sc-eQTL 8.82e-01 0.0147 0.0989 0.28 CD8_Naive L2
ENSG00000116678 LEPR -640697 sc-eQTL 6.80e-01 -0.0404 0.0978 0.28 CD8_TCM L2
ENSG00000158966 CACHD1 309826 sc-eQTL 7.97e-01 -0.0136 0.0528 0.28 CD8_TCM L2
ENSG00000162434 JAK1 -287799 sc-eQTL 7.19e-01 0.0306 0.085 0.28 CD8_TCM L2
ENSG00000213625 LEPROT -640632 sc-eQTL 2.88e-01 0.113 0.106 0.28 CD8_TCM L2
ENSG00000116678 LEPR -640697 sc-eQTL 5.37e-01 0.0549 0.0887 0.285 CD8_TEM L2
ENSG00000158966 CACHD1 309826 sc-eQTL 3.42e-01 0.0202 0.0212 0.285 CD8_TEM L2
ENSG00000162434 JAK1 -287799 sc-eQTL 8.27e-02 0.174 0.0996 0.285 CD8_TEM L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.16e-01 0.0673 0.103 0.285 CD8_TEM L2
ENSG00000162434 JAK1 -287799 sc-eQTL 7.90e-01 0.0234 0.0878 0.281 MAIT L2
ENSG00000162437 RAVER2 34860 sc-eQTL 7.27e-01 -0.0327 0.0935 0.281 MAIT L2
ENSG00000213625 LEPROT -640632 sc-eQTL 2.65e-01 0.113 0.101 0.281 MAIT L2
ENSG00000116678 LEPR -640697 sc-eQTL 8.47e-01 0.018 0.0933 0.273 NK_CD56bright L2
ENSG00000162434 JAK1 -287799 sc-eQTL 6.55e-02 0.117 0.0634 0.273 NK_CD56bright L2
ENSG00000213625 LEPROT -640632 sc-eQTL 4.89e-01 -0.0727 0.105 0.273 NK_CD56bright L2
ENSG00000116678 LEPR -640697 sc-eQTL 8.57e-01 -0.0179 0.0988 0.278 NK_CD56dim L2
ENSG00000162434 JAK1 -287799 sc-eQTL 8.12e-01 0.0123 0.0516 0.278 NK_CD56dim L2
ENSG00000213625 LEPROT -640632 sc-eQTL 3.99e-01 -0.0881 0.104 0.278 NK_CD56dim L2
ENSG00000116678 LEPR -640697 sc-eQTL 9.63e-01 -0.00411 0.0885 0.279 NK_HLA L2
ENSG00000162434 JAK1 -287799 sc-eQTL 6.79e-01 0.0285 0.0688 0.279 NK_HLA L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.61e-01 0.0621 0.107 0.279 NK_HLA L2
ENSG00000116678 LEPR -640697 sc-eQTL 8.84e-01 0.0143 0.0974 0.278 NK_cytokine L2
ENSG00000162434 JAK1 -287799 sc-eQTL 2.21e-01 0.0694 0.0565 0.278 NK_cytokine L2
ENSG00000213625 LEPROT -640632 sc-eQTL 1.29e-01 -0.156 0.103 0.278 NK_cytokine L2
ENSG00000162434 JAK1 -287799 sc-eQTL 9.45e-01 0.00617 0.0892 0.27 PB L2
ENSG00000213625 LEPROT -640632 sc-eQTL 1.73e-02 0.294 0.122 0.27 PB L2
ENSG00000162434 JAK1 -287799 sc-eQTL 1.63e-02 0.155 0.0639 0.283 Pro_T L2
ENSG00000162437 RAVER2 34860 sc-eQTL 3.82e-01 0.0748 0.0853 0.283 Pro_T L2
ENSG00000213625 LEPROT -640632 sc-eQTL 1.72e-01 -0.137 0.1 0.283 Pro_T L2
ENSG00000158966 CACHD1 309826 sc-eQTL 8.10e-01 -0.0184 0.0763 0.28 Treg L2
ENSG00000162434 JAK1 -287799 sc-eQTL 2.81e-01 -0.0875 0.0811 0.28 Treg L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.68e-02 0.2 0.104 0.28 Treg L2
ENSG00000116678 LEPR -640697 sc-eQTL 4.99e-01 -0.0666 0.0984 0.285 cDC L2
ENSG00000162433 AK4 -367594 sc-eQTL 8.34e-01 -0.0183 0.087 0.285 cDC L2
ENSG00000162434 JAK1 -287799 sc-eQTL 9.66e-01 0.00343 0.0812 0.285 cDC L2
ENSG00000162437 RAVER2 34860 sc-eQTL 8.64e-01 -0.0153 0.0892 0.285 cDC L2
ENSG00000213625 LEPROT -640632 sc-eQTL 2.00e-01 -0.127 0.0986 0.285 cDC L2
ENSG00000285079 AL513493.1 -924007 sc-eQTL 3.40e-01 0.034 0.0355 0.285 cDC L2
ENSG00000116678 LEPR -640697 sc-eQTL 5.15e-01 -0.0633 0.097 0.28 cMono_IL1B L2
ENSG00000162433 AK4 -367594 sc-eQTL 1.55e-01 -0.127 0.089 0.28 cMono_IL1B L2
ENSG00000162434 JAK1 -287799 sc-eQTL 9.77e-01 -0.00232 0.0813 0.28 cMono_IL1B L2
ENSG00000213625 LEPROT -640632 sc-eQTL 8.05e-02 0.115 0.0652 0.28 cMono_IL1B L2
ENSG00000116678 LEPR -640697 sc-eQTL 6.98e-01 -0.0372 0.0958 0.28 cMono_S100A L2
ENSG00000162433 AK4 -367594 sc-eQTL 2.47e-01 -0.105 0.0906 0.28 cMono_S100A L2
ENSG00000162434 JAK1 -287799 sc-eQTL 8.00e-01 0.0212 0.0839 0.28 cMono_S100A L2
ENSG00000213625 LEPROT -640632 sc-eQTL 1.90e-01 0.103 0.0781 0.28 cMono_S100A L2
ENSG00000162434 JAK1 -287799 sc-eQTL 5.06e-01 -0.0827 0.124 0.276 gdT L2
ENSG00000162437 RAVER2 34860 sc-eQTL 7.15e-01 0.04 0.109 0.276 gdT L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.45e-01 -0.0793 0.131 0.276 gdT L2
ENSG00000116678 LEPR -640697 sc-eQTL 2.01e-01 0.12 0.0939 0.28 intMono L2
ENSG00000162433 AK4 -367594 sc-eQTL 3.56e-01 -0.082 0.0887 0.28 intMono L2
ENSG00000162434 JAK1 -287799 sc-eQTL 8.85e-02 0.14 0.0816 0.28 intMono L2
ENSG00000213625 LEPROT -640632 sc-eQTL 3.53e-02 0.166 0.0783 0.28 intMono L2
ENSG00000116678 LEPR -640697 sc-eQTL 1.27e-01 -0.143 0.0933 0.283 ncMono L2
ENSG00000162433 AK4 -367594 sc-eQTL 4.34e-01 0.0654 0.0835 0.283 ncMono L2
ENSG00000162434 JAK1 -287799 sc-eQTL 2.50e-01 0.0778 0.0675 0.283 ncMono L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.77e-01 0.0535 0.096 0.283 ncMono L2
ENSG00000116678 LEPR -640697 sc-eQTL 7.17e-01 0.0383 0.105 0.288 pDC L2
ENSG00000162433 AK4 -367594 sc-eQTL 9.15e-01 -0.0073 0.0687 0.288 pDC L2
ENSG00000162434 JAK1 -287799 sc-eQTL 1.69e-01 0.126 0.0912 0.288 pDC L2
ENSG00000162437 RAVER2 34860 sc-eQTL 1.28e-01 0.157 0.103 0.288 pDC L2
ENSG00000213625 LEPROT -640632 sc-eQTL 5.46e-01 -0.0689 0.114 0.288 pDC L2
ENSG00000285079 AL513493.1 -924007 sc-eQTL 3.01e-01 -0.0889 0.0857 0.288 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -287799 sc-eQTL 1.95e-01 0.0967 0.0744 0.28 B_Memory LOneK1K
ENSG00000213625 LEPROT -640632 sc-eQTL 5.88e-01 -0.0521 0.0958 0.28 B_Memory LOneK1K
ENSG00000162434 JAK1 -287799 sc-eQTL 7.66e-01 -0.0217 0.0726 0.28 B_Naive LOneK1K
ENSG00000213625 LEPROT -640632 sc-eQTL 6.12e-01 -0.0466 0.0917 0.28 B_Naive LOneK1K
ENSG00000116678 LEPR -640697 sc-eQTL 3.78e-01 -0.0838 0.0948 0.28 CD14_Mono LOneK1K
ENSG00000162433 AK4 -367594 sc-eQTL 2.37e-01 -0.107 0.0906 0.28 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -287799 sc-eQTL 9.11e-01 0.00856 0.076 0.28 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -640632 sc-eQTL 1.73e-02 0.151 0.0629 0.28 CD14_Mono LOneK1K
ENSG00000116678 LEPR -640697 sc-eQTL 8.40e-01 -0.0193 0.0953 0.28 CD16_Mono LOneK1K
ENSG00000162433 AK4 -367594 sc-eQTL 8.77e-01 0.0134 0.0863 0.28 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -287799 sc-eQTL 5.08e-02 0.113 0.0575 0.28 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -640632 sc-eQTL 4.99e-02 0.158 0.0802 0.28 CD16_Mono LOneK1K
ENSG00000116678 LEPR -640697 sc-eQTL 8.52e-01 0.0181 0.0964 0.278 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -287799 sc-eQTL 6.36e-01 0.0214 0.0452 0.278 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -640632 sc-eQTL 2.73e-01 -0.11 0.0996 0.278 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116678 LEPR -640697 pQTL 0.0279 -0.0731 0.0332 0.00135 0.0 0.259
ENSG00000162434 JAK1 -186594 eQTL 6.09e-13 0.122 0.0167 0.0 0.0 0.257
ENSG00000162437 RAVER2 34860 eQTL 1.11e-18 0.223 0.0248 0.0 0.0 0.257

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -186594 1.97e-06 2.51e-06 3.08e-07 1.53e-06 4.74e-07 6.41e-07 1.31e-06 4.97e-07 1.65e-06 7.42e-07 1.96e-06 1.46e-06 3.07e-06 8.66e-07 4.99e-07 1.18e-06 1.12e-06 1.51e-06 5.75e-07 8.01e-07 7.02e-07 2.17e-06 1.82e-06 1.01e-06 2.57e-06 1.12e-06 1.21e-06 1.46e-06 1.69e-06 1.47e-06 9.62e-07 2.73e-07 3.84e-07 8.72e-07 8.94e-07 6.66e-07 6.89e-07 3.35e-07 5.95e-07 3.46e-07 3.05e-07 2.94e-06 3.68e-07 1.91e-07 3.39e-07 2.82e-07 4.03e-07 1.97e-07 2.46e-07
ENSG00000162437 RAVER2 34860 1.39e-05 1.43e-05 2.5e-06 8.5e-06 2.69e-06 6.19e-06 1.81e-05 2.78e-06 1.41e-05 6.99e-06 1.85e-05 6.84e-06 2.44e-05 5.15e-06 4.37e-06 9.16e-06 7.11e-06 1.21e-05 3.87e-06 3.93e-06 7.26e-06 1.35e-05 1.36e-05 4.81e-06 2.4e-05 5.11e-06 7.62e-06 6.3e-06 1.48e-05 1.25e-05 9.27e-06 9.89e-07 1.38e-06 3.99e-06 5.85e-06 3.78e-06 1.76e-06 2.38e-06 2.66e-06 2.05e-06 1.34e-06 1.89e-05 2.23e-06 3.05e-07 1.78e-06 2.35e-06 2.4e-06 9.75e-07 1.01e-06