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Genes within 1Mb (chr1:64762424:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -305330 sc-eQTL 4.25e-01 -0.0484 0.0605 0.237 B L1
ENSG00000213625 LEPROT -658163 sc-eQTL 3.15e-01 0.0777 0.0772 0.237 B L1
ENSG00000158966 CACHD1 292295 sc-eQTL 1.33e-01 0.0863 0.0572 0.237 CD4T L1
ENSG00000162434 JAK1 -305330 sc-eQTL 2.00e-01 0.0773 0.0601 0.237 CD4T L1
ENSG00000213625 LEPROT -658163 sc-eQTL 5.92e-01 0.0506 0.0942 0.237 CD4T L1
ENSG00000116678 LEPR -658228 sc-eQTL 2.78e-01 0.11 0.101 0.237 CD8T L1
ENSG00000158966 CACHD1 292295 sc-eQTL 8.35e-01 -0.0104 0.0498 0.237 CD8T L1
ENSG00000162434 JAK1 -305330 sc-eQTL 5.46e-01 -0.0475 0.0785 0.237 CD8T L1
ENSG00000213625 LEPROT -658163 sc-eQTL 5.59e-01 -0.0609 0.104 0.237 CD8T L1
ENSG00000116678 LEPR -658228 sc-eQTL 8.22e-01 -0.0223 0.0988 0.232 DC L1
ENSG00000162433 AK4 -385125 sc-eQTL 3.72e-01 -0.0742 0.0829 0.232 DC L1
ENSG00000162434 JAK1 -305330 sc-eQTL 1.12e-01 -0.109 0.0687 0.232 DC L1
ENSG00000162437 RAVER2 17329 sc-eQTL 2.33e-02 -0.2 0.0874 0.232 DC L1
ENSG00000213625 LEPROT -658163 sc-eQTL 3.81e-02 -0.202 0.0969 0.232 DC L1
ENSG00000285079 AL513493.1 -941538 sc-eQTL 5.21e-01 -0.0339 0.0527 0.232 DC L1
ENSG00000116678 LEPR -658228 sc-eQTL 9.72e-01 0.00348 0.0987 0.237 Mono L1
ENSG00000162433 AK4 -385125 sc-eQTL 5.11e-01 -0.0594 0.0902 0.237 Mono L1
ENSG00000162434 JAK1 -305330 sc-eQTL 1.51e-01 -0.0924 0.0641 0.237 Mono L1
ENSG00000213625 LEPROT -658163 sc-eQTL 6.28e-01 -0.0309 0.0637 0.237 Mono L1
ENSG00000116678 LEPR -658228 sc-eQTL 8.09e-01 -0.0234 0.0969 0.238 NK L1
ENSG00000162434 JAK1 -305330 sc-eQTL 3.98e-02 0.0937 0.0453 0.238 NK L1
ENSG00000213625 LEPROT -658163 sc-eQTL 7.96e-01 -0.027 0.104 0.238 NK L1
ENSG00000162434 JAK1 -305330 sc-eQTL 8.55e-01 -0.012 0.0655 0.237 Other_T L1
ENSG00000162437 RAVER2 17329 sc-eQTL 5.63e-03 -0.262 0.0935 0.237 Other_T L1
ENSG00000213625 LEPROT -658163 sc-eQTL 3.88e-01 -0.089 0.103 0.237 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -305330 sc-eQTL 6.70e-01 -0.0451 0.106 0.242 B_Activated L2
ENSG00000213625 LEPROT -658163 sc-eQTL 5.84e-01 0.0606 0.11 0.242 B_Activated L2
ENSG00000162434 JAK1 -305330 sc-eQTL 6.62e-01 -0.0377 0.0862 0.238 B_Intermediate L2
ENSG00000213625 LEPROT -658163 sc-eQTL 5.72e-01 0.0572 0.101 0.238 B_Intermediate L2
ENSG00000162434 JAK1 -305330 sc-eQTL 2.97e-01 -0.0895 0.0856 0.239 B_Memory L2
ENSG00000213625 LEPROT -658163 sc-eQTL 4.44e-01 0.0764 0.0996 0.239 B_Memory L2
ENSG00000162434 JAK1 -305330 sc-eQTL 3.93e-01 -0.066 0.0771 0.237 B_Naive1 L2
ENSG00000213625 LEPROT -658163 sc-eQTL 7.99e-01 0.0256 0.101 0.237 B_Naive1 L2
ENSG00000162434 JAK1 -305330 sc-eQTL 7.32e-01 0.028 0.0817 0.238 B_Naive2 L2
ENSG00000213625 LEPROT -658163 sc-eQTL 8.83e-01 -0.0145 0.0985 0.238 B_Naive2 L2
ENSG00000158966 CACHD1 292295 sc-eQTL 3.97e-01 -0.0325 0.0383 0.234 CD4_CTL L2
ENSG00000162434 JAK1 -305330 sc-eQTL 1.74e-01 -0.129 0.0941 0.234 CD4_CTL L2
ENSG00000213625 LEPROT -658163 sc-eQTL 8.92e-01 -0.0148 0.109 0.234 CD4_CTL L2
ENSG00000158966 CACHD1 292295 sc-eQTL 1.62e-01 0.0804 0.0574 0.237 CD4_Naive L2
ENSG00000162434 JAK1 -305330 sc-eQTL 3.94e-02 0.121 0.0582 0.237 CD4_Naive L2
ENSG00000213625 LEPROT -658163 sc-eQTL 9.34e-01 0.0079 0.0954 0.237 CD4_Naive L2
ENSG00000158966 CACHD1 292295 sc-eQTL 9.08e-01 -0.00946 0.082 0.237 CD4_TCM L2
ENSG00000162434 JAK1 -305330 sc-eQTL 6.77e-01 0.0279 0.067 0.237 CD4_TCM L2
ENSG00000213625 LEPROT -658163 sc-eQTL 3.78e-01 0.0857 0.0971 0.237 CD4_TCM L2
ENSG00000158966 CACHD1 292295 sc-eQTL 4.32e-02 -0.124 0.0611 0.237 CD4_TEM L2
ENSG00000162434 JAK1 -305330 sc-eQTL 6.12e-01 -0.0445 0.0877 0.237 CD4_TEM L2
ENSG00000213625 LEPROT -658163 sc-eQTL 4.75e-01 -0.0746 0.104 0.237 CD4_TEM L2
ENSG00000116678 LEPR -658228 sc-eQTL 1.51e-01 0.142 0.0984 0.237 CD8_CTL L2
ENSG00000158966 CACHD1 292295 sc-eQTL 8.79e-01 0.00676 0.0445 0.237 CD8_CTL L2
ENSG00000162434 JAK1 -305330 sc-eQTL 2.57e-02 -0.184 0.082 0.237 CD8_CTL L2
ENSG00000213625 LEPROT -658163 sc-eQTL 1.95e-01 -0.131 0.101 0.237 CD8_CTL L2
ENSG00000116678 LEPR -658228 sc-eQTL 5.74e-01 0.0557 0.0989 0.237 CD8_Naive L2
ENSG00000158966 CACHD1 292295 sc-eQTL 8.61e-01 -0.012 0.0686 0.237 CD8_Naive L2
ENSG00000162434 JAK1 -305330 sc-eQTL 6.29e-01 0.0399 0.0825 0.237 CD8_Naive L2
ENSG00000213625 LEPROT -658163 sc-eQTL 8.63e-02 -0.173 0.1 0.237 CD8_Naive L2
ENSG00000116678 LEPR -658228 sc-eQTL 9.68e-01 -0.0039 0.0968 0.236 CD8_TCM L2
ENSG00000158966 CACHD1 292295 sc-eQTL 6.42e-01 -0.0243 0.0522 0.236 CD8_TCM L2
ENSG00000162434 JAK1 -305330 sc-eQTL 1.28e-01 -0.128 0.0836 0.236 CD8_TCM L2
ENSG00000213625 LEPROT -658163 sc-eQTL 6.28e-01 0.0509 0.105 0.236 CD8_TCM L2
ENSG00000116678 LEPR -658228 sc-eQTL 2.35e-01 -0.108 0.0906 0.247 CD8_TEM L2
ENSG00000158966 CACHD1 292295 sc-eQTL 3.51e-01 -0.0203 0.0217 0.247 CD8_TEM L2
ENSG00000162434 JAK1 -305330 sc-eQTL 7.47e-01 -0.0332 0.103 0.247 CD8_TEM L2
ENSG00000213625 LEPROT -658163 sc-eQTL 2.94e-01 0.111 0.106 0.247 CD8_TEM L2
ENSG00000162434 JAK1 -305330 sc-eQTL 4.10e-01 -0.0732 0.0887 0.238 MAIT L2
ENSG00000162437 RAVER2 17329 sc-eQTL 1.22e-01 -0.146 0.0942 0.238 MAIT L2
ENSG00000213625 LEPROT -658163 sc-eQTL 1.18e-01 -0.16 0.102 0.238 MAIT L2
ENSG00000116678 LEPR -658228 sc-eQTL 2.17e-01 -0.117 0.0943 0.238 NK_CD56bright L2
ENSG00000162434 JAK1 -305330 sc-eQTL 4.91e-01 -0.0447 0.0648 0.238 NK_CD56bright L2
ENSG00000213625 LEPROT -658163 sc-eQTL 7.08e-01 -0.04 0.106 0.238 NK_CD56bright L2
ENSG00000116678 LEPR -658228 sc-eQTL 8.98e-01 -0.0132 0.102 0.239 NK_CD56dim L2
ENSG00000162434 JAK1 -305330 sc-eQTL 8.05e-03 0.141 0.0526 0.239 NK_CD56dim L2
ENSG00000213625 LEPROT -658163 sc-eQTL 5.04e-01 -0.0724 0.108 0.239 NK_CD56dim L2
ENSG00000116678 LEPR -658228 sc-eQTL 5.40e-01 -0.055 0.0896 0.242 NK_HLA L2
ENSG00000162434 JAK1 -305330 sc-eQTL 8.98e-01 0.00898 0.0698 0.242 NK_HLA L2
ENSG00000213625 LEPROT -658163 sc-eQTL 9.85e-01 0.002 0.108 0.242 NK_HLA L2
ENSG00000116678 LEPR -658228 sc-eQTL 7.91e-01 0.026 0.0979 0.239 NK_cytokine L2
ENSG00000162434 JAK1 -305330 sc-eQTL 4.74e-01 0.0408 0.0569 0.239 NK_cytokine L2
ENSG00000213625 LEPROT -658163 sc-eQTL 8.44e-01 -0.0204 0.104 0.239 NK_cytokine L2
ENSG00000162434 JAK1 -305330 sc-eQTL 4.95e-02 0.2 0.101 0.215 PB L2
ENSG00000213625 LEPROT -658163 sc-eQTL 1.66e-01 -0.198 0.142 0.215 PB L2
ENSG00000162434 JAK1 -305330 sc-eQTL 9.05e-01 0.00796 0.0663 0.23 Pro_T L2
ENSG00000162437 RAVER2 17329 sc-eQTL 6.82e-01 -0.0359 0.0874 0.23 Pro_T L2
ENSG00000213625 LEPROT -658163 sc-eQTL 4.55e-01 0.0771 0.103 0.23 Pro_T L2
ENSG00000158966 CACHD1 292295 sc-eQTL 7.25e-01 -0.0277 0.0785 0.237 Treg L2
ENSG00000162434 JAK1 -305330 sc-eQTL 3.26e-01 0.0822 0.0834 0.237 Treg L2
ENSG00000213625 LEPROT -658163 sc-eQTL 8.45e-01 -0.0213 0.108 0.237 Treg L2
ENSG00000116678 LEPR -658228 sc-eQTL 9.22e-01 0.0103 0.105 0.222 cDC L2
ENSG00000162433 AK4 -385125 sc-eQTL 6.00e-01 -0.0486 0.0925 0.222 cDC L2
ENSG00000162434 JAK1 -305330 sc-eQTL 4.70e-01 -0.0624 0.0863 0.222 cDC L2
ENSG00000162437 RAVER2 17329 sc-eQTL 6.30e-02 -0.176 0.094 0.222 cDC L2
ENSG00000213625 LEPROT -658163 sc-eQTL 9.76e-01 -0.00314 0.105 0.222 cDC L2
ENSG00000285079 AL513493.1 -941538 sc-eQTL 9.82e-01 0.000847 0.0378 0.222 cDC L2
ENSG00000116678 LEPR -658228 sc-eQTL 6.79e-01 0.0418 0.101 0.237 cMono_IL1B L2
ENSG00000162433 AK4 -385125 sc-eQTL 9.60e-01 -0.00466 0.093 0.237 cMono_IL1B L2
ENSG00000162434 JAK1 -305330 sc-eQTL 1.02e-01 -0.138 0.084 0.237 cMono_IL1B L2
ENSG00000213625 LEPROT -658163 sc-eQTL 4.77e-01 0.0487 0.0683 0.237 cMono_IL1B L2
ENSG00000116678 LEPR -658228 sc-eQTL 3.20e-01 -0.0977 0.0981 0.237 cMono_S100A L2
ENSG00000162433 AK4 -385125 sc-eQTL 8.20e-01 -0.0212 0.0933 0.237 cMono_S100A L2
ENSG00000162434 JAK1 -305330 sc-eQTL 9.64e-01 -0.00392 0.0861 0.237 cMono_S100A L2
ENSG00000213625 LEPROT -658163 sc-eQTL 6.02e-02 -0.151 0.0799 0.237 cMono_S100A L2
ENSG00000162434 JAK1 -305330 sc-eQTL 8.85e-01 0.0167 0.115 0.258 gdT L2
ENSG00000162437 RAVER2 17329 sc-eQTL 6.96e-02 -0.183 0.1 0.258 gdT L2
ENSG00000213625 LEPROT -658163 sc-eQTL 9.80e-02 -0.2 0.12 0.258 gdT L2
ENSG00000116678 LEPR -658228 sc-eQTL 9.94e-01 -0.000774 0.0988 0.236 intMono L2
ENSG00000162433 AK4 -385125 sc-eQTL 9.70e-01 0.00345 0.0931 0.236 intMono L2
ENSG00000162434 JAK1 -305330 sc-eQTL 6.08e-01 -0.0443 0.0861 0.236 intMono L2
ENSG00000213625 LEPROT -658163 sc-eQTL 7.55e-01 0.0259 0.083 0.236 intMono L2
ENSG00000116678 LEPR -658228 sc-eQTL 3.67e-01 0.0866 0.0957 0.24 ncMono L2
ENSG00000162433 AK4 -385125 sc-eQTL 5.40e-01 -0.0525 0.0855 0.24 ncMono L2
ENSG00000162434 JAK1 -305330 sc-eQTL 5.69e-01 -0.0395 0.0691 0.24 ncMono L2
ENSG00000213625 LEPROT -658163 sc-eQTL 9.51e-01 -0.006 0.0982 0.24 ncMono L2
ENSG00000116678 LEPR -658228 sc-eQTL 2.79e-01 -0.109 0.1 0.246 pDC L2
ENSG00000162433 AK4 -385125 sc-eQTL 7.91e-02 0.115 0.0648 0.246 pDC L2
ENSG00000162434 JAK1 -305330 sc-eQTL 1.68e-01 -0.12 0.0869 0.246 pDC L2
ENSG00000162437 RAVER2 17329 sc-eQTL 1.46e-02 -0.239 0.0967 0.246 pDC L2
ENSG00000213625 LEPROT -658163 sc-eQTL 1.19e-01 -0.169 0.108 0.246 pDC L2
ENSG00000285079 AL513493.1 -941538 sc-eQTL 3.86e-01 -0.0711 0.0818 0.246 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -305330 sc-eQTL 4.03e-01 -0.0642 0.0765 0.237 B_Memory LOneK1K
ENSG00000213625 LEPROT -658163 sc-eQTL 1.80e-01 0.132 0.098 0.237 B_Memory LOneK1K
ENSG00000162434 JAK1 -305330 sc-eQTL 4.99e-01 -0.0504 0.0743 0.237 B_Naive LOneK1K
ENSG00000213625 LEPROT -658163 sc-eQTL 8.02e-01 0.0236 0.0941 0.237 B_Naive LOneK1K
ENSG00000116678 LEPR -658228 sc-eQTL 9.67e-01 -0.00403 0.0975 0.237 CD14_Mono LOneK1K
ENSG00000162433 AK4 -385125 sc-eQTL 5.49e-01 -0.056 0.0933 0.237 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -305330 sc-eQTL 2.04e-01 -0.099 0.0778 0.237 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -658163 sc-eQTL 3.72e-01 -0.0585 0.0653 0.237 CD14_Mono LOneK1K
ENSG00000116678 LEPR -658228 sc-eQTL 9.21e-01 0.00984 0.0992 0.239 CD16_Mono LOneK1K
ENSG00000162433 AK4 -385125 sc-eQTL 5.70e-01 0.051 0.0897 0.239 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -305330 sc-eQTL 6.49e-01 -0.0275 0.0604 0.239 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -658163 sc-eQTL 5.95e-01 0.0448 0.0842 0.239 CD16_Mono LOneK1K
ENSG00000116678 LEPR -658228 sc-eQTL 7.81e-01 -0.0277 0.0999 0.239 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -305330 sc-eQTL 3.87e-02 0.0965 0.0464 0.239 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -658163 sc-eQTL 6.77e-01 -0.0432 0.104 0.239 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -204125 eQTL 0.0472 -0.0337 0.017 0.0 0.0 0.25
ENSG00000162437 RAVER2 17329 eQTL 1.58e-48 -0.355 0.0229 0.0 0.0216 0.25
ENSG00000233877 AL606517.1 -179555 eQTL 0.0148 0.0897 0.0367 0.0 0.0 0.25

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000158966 \N 292295 1.21e-06 1.27e-06 3.04e-07 1.28e-06 3.86e-07 6.02e-07 1.46e-06 3.81e-07 1.59e-06 6.28e-07 1.85e-06 8.32e-07 2.5e-06 2.89e-07 5.04e-07 9.67e-07 8.94e-07 7.78e-07 8.59e-07 4.81e-07 7.96e-07 1.89e-06 8.89e-07 6.27e-07 2.49e-06 6.73e-07 9.37e-07 8.66e-07 1.49e-06 1.29e-06 8.51e-07 2.45e-07 2.64e-07 6.19e-07 5.23e-07 5.32e-07 7.36e-07 2.74e-07 4.94e-07 3.08e-07 2.8e-07 1.95e-06 6.21e-08 1.38e-07 2.62e-07 2.11e-07 2.15e-07 3.7e-08 2.05e-07
ENSG00000162437 RAVER2 17329 2.47e-05 2.87e-05 5.7e-06 1.47e-05 5.25e-06 1.29e-05 3.87e-05 4.59e-06 2.85e-05 1.52e-05 3.55e-05 1.52e-05 4.4e-05 1.17e-05 6.24e-06 1.59e-05 1.44e-05 2.28e-05 7.56e-06 6.6e-06 1.38e-05 2.92e-05 2.66e-05 8.66e-06 3.96e-05 7.34e-06 1.3e-05 1.17e-05 2.85e-05 2.28e-05 1.87e-05 1.61e-06 2.43e-06 6.71e-06 1.11e-05 5.61e-06 2.85e-06 3.18e-06 4.43e-06 3.3e-06 1.74e-06 3.29e-05 2.98e-06 4.08e-07 2.45e-06 3.66e-06 4.04e-06 1.53e-06 1.53e-06
ENSG00000233877 AL606517.1 -179555 2.77e-06 3.29e-06 4.65e-07 1.97e-06 8.57e-07 7.84e-07 2.48e-06 8.47e-07 2.44e-06 1.46e-06 2.98e-06 1.66e-06 4.27e-06 1.4e-06 9.04e-07 2.03e-06 1.46e-06 2.2e-06 1.49e-06 1.21e-06 1.57e-06 3.45e-06 2.71e-06 1.6e-06 4.32e-06 1.07e-06 1.53e-06 1.72e-06 2.66e-06 1.99e-06 2e-06 5.07e-07 6.2e-07 1.39e-06 1.61e-06 9.54e-07 9.41e-07 3.93e-07 1.13e-06 3.98e-07 2.39e-07 4.1e-06 5.57e-07 1.6e-07 3.41e-07 3.43e-07 8.36e-07 2.33e-07 1.63e-07