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Genes within 1Mb (chr1:64757869:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -309885 sc-eQTL 8.74e-01 0.00935 0.0589 0.271 B L1
ENSG00000213625 LEPROT -662718 sc-eQTL 7.91e-01 -0.0199 0.0753 0.271 B L1
ENSG00000158966 CACHD1 287740 sc-eQTL 8.46e-01 -0.0109 0.0561 0.271 CD4T L1
ENSG00000162434 JAK1 -309885 sc-eQTL 7.62e-01 -0.0178 0.0588 0.271 CD4T L1
ENSG00000213625 LEPROT -662718 sc-eQTL 8.80e-01 0.0139 0.0919 0.271 CD4T L1
ENSG00000116678 LEPR -662783 sc-eQTL 1.29e-01 -0.147 0.0965 0.271 CD8T L1
ENSG00000158966 CACHD1 287740 sc-eQTL 3.86e-01 -0.0414 0.0477 0.271 CD8T L1
ENSG00000162434 JAK1 -309885 sc-eQTL 9.66e-01 -0.00323 0.0753 0.271 CD8T L1
ENSG00000213625 LEPROT -662718 sc-eQTL 3.34e-01 0.0965 0.0995 0.271 CD8T L1
ENSG00000116678 LEPR -662783 sc-eQTL 4.44e-01 -0.0745 0.0971 0.277 DC L1
ENSG00000162433 AK4 -389680 sc-eQTL 1.96e-01 -0.106 0.0814 0.277 DC L1
ENSG00000162434 JAK1 -309885 sc-eQTL 5.15e-01 0.0443 0.0679 0.277 DC L1
ENSG00000162437 RAVER2 12774 sc-eQTL 7.64e-01 0.0262 0.0871 0.277 DC L1
ENSG00000213625 LEPROT -662718 sc-eQTL 6.82e-01 -0.0395 0.0964 0.277 DC L1
ENSG00000285079 AL513493.1 -946093 sc-eQTL 3.64e-01 -0.0471 0.0518 0.277 DC L1
ENSG00000116678 LEPR -662783 sc-eQTL 3.92e-01 -0.0825 0.0962 0.271 Mono L1
ENSG00000162433 AK4 -389680 sc-eQTL 1.27e-01 -0.134 0.0877 0.271 Mono L1
ENSG00000162434 JAK1 -309885 sc-eQTL 3.94e-01 0.0537 0.0628 0.271 Mono L1
ENSG00000213625 LEPROT -662718 sc-eQTL 1.05e-02 0.158 0.0613 0.271 Mono L1
ENSG00000116678 LEPR -662783 sc-eQTL 6.50e-01 0.0424 0.0934 0.27 NK L1
ENSG00000162434 JAK1 -309885 sc-eQTL 4.97e-01 0.03 0.0441 0.27 NK L1
ENSG00000213625 LEPROT -662718 sc-eQTL 5.82e-01 -0.0556 0.101 0.27 NK L1
ENSG00000162434 JAK1 -309885 sc-eQTL 2.46e-01 0.076 0.0653 0.271 Other_T L1
ENSG00000162437 RAVER2 12774 sc-eQTL 3.97e-01 -0.0806 0.095 0.271 Other_T L1
ENSG00000213625 LEPROT -662718 sc-eQTL 7.73e-01 0.0298 0.103 0.271 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -309885 sc-eQTL 5.91e-02 0.193 0.101 0.268 B_Activated L2
ENSG00000213625 LEPROT -662718 sc-eQTL 7.76e-01 -0.0305 0.107 0.268 B_Activated L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.12e-01 -0.0313 0.0847 0.273 B_Intermediate L2
ENSG00000213625 LEPROT -662718 sc-eQTL 3.44e-01 -0.094 0.0991 0.273 B_Intermediate L2
ENSG00000162434 JAK1 -309885 sc-eQTL 1.58e-02 0.207 0.0852 0.274 B_Memory L2
ENSG00000213625 LEPROT -662718 sc-eQTL 8.32e-01 0.0214 0.1 0.274 B_Memory L2
ENSG00000162434 JAK1 -309885 sc-eQTL 4.13e-01 -0.0611 0.0745 0.271 B_Naive1 L2
ENSG00000213625 LEPROT -662718 sc-eQTL 5.58e-01 -0.0571 0.0973 0.271 B_Naive1 L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.50e-01 0.0252 0.079 0.273 B_Naive2 L2
ENSG00000213625 LEPROT -662718 sc-eQTL 3.78e-01 0.0841 0.0951 0.273 B_Naive2 L2
ENSG00000158966 CACHD1 287740 sc-eQTL 7.52e-01 -0.012 0.0381 0.277 CD4_CTL L2
ENSG00000162434 JAK1 -309885 sc-eQTL 6.92e-01 0.0373 0.094 0.277 CD4_CTL L2
ENSG00000213625 LEPROT -662718 sc-eQTL 6.81e-01 -0.0444 0.108 0.277 CD4_CTL L2
ENSG00000158966 CACHD1 287740 sc-eQTL 8.40e-01 -0.0114 0.0562 0.271 CD4_Naive L2
ENSG00000162434 JAK1 -309885 sc-eQTL 5.99e-01 -0.0302 0.0573 0.271 CD4_Naive L2
ENSG00000213625 LEPROT -662718 sc-eQTL 9.65e-01 0.00414 0.093 0.271 CD4_Naive L2
ENSG00000158966 CACHD1 287740 sc-eQTL 7.56e-01 -0.0247 0.0793 0.271 CD4_TCM L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.60e-01 0.0199 0.0649 0.271 CD4_TCM L2
ENSG00000213625 LEPROT -662718 sc-eQTL 8.22e-01 -0.0212 0.0941 0.271 CD4_TCM L2
ENSG00000158966 CACHD1 287740 sc-eQTL 8.54e-01 0.0113 0.0612 0.271 CD4_TEM L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.11e-01 -0.0323 0.087 0.271 CD4_TEM L2
ENSG00000213625 LEPROT -662718 sc-eQTL 4.13e-01 0.0846 0.103 0.271 CD4_TEM L2
ENSG00000116678 LEPR -662783 sc-eQTL 1.80e-02 -0.223 0.0935 0.271 CD8_CTL L2
ENSG00000158966 CACHD1 287740 sc-eQTL 1.94e-01 -0.0553 0.0424 0.271 CD8_CTL L2
ENSG00000162434 JAK1 -309885 sc-eQTL 6.33e-01 0.038 0.0795 0.271 CD8_CTL L2
ENSG00000213625 LEPROT -662718 sc-eQTL 7.99e-02 0.17 0.0966 0.271 CD8_CTL L2
ENSG00000116678 LEPR -662783 sc-eQTL 8.22e-01 0.0217 0.0965 0.271 CD8_Naive L2
ENSG00000158966 CACHD1 287740 sc-eQTL 2.86e-01 -0.0713 0.0667 0.271 CD8_Naive L2
ENSG00000162434 JAK1 -309885 sc-eQTL 2.43e-01 -0.094 0.0802 0.271 CD8_Naive L2
ENSG00000213625 LEPROT -662718 sc-eQTL 7.62e-01 0.0299 0.0985 0.271 CD8_Naive L2
ENSG00000116678 LEPR -662783 sc-eQTL 6.81e-01 -0.0401 0.0975 0.273 CD8_TCM L2
ENSG00000158966 CACHD1 287740 sc-eQTL 6.11e-01 -0.0268 0.0526 0.273 CD8_TCM L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.07e-01 0.0318 0.0847 0.273 CD8_TCM L2
ENSG00000213625 LEPROT -662718 sc-eQTL 3.41e-01 0.101 0.105 0.273 CD8_TCM L2
ENSG00000116678 LEPR -662783 sc-eQTL 4.18e-01 0.0716 0.0882 0.276 CD8_TEM L2
ENSG00000158966 CACHD1 287740 sc-eQTL 3.11e-01 0.0214 0.0211 0.276 CD8_TEM L2
ENSG00000162434 JAK1 -309885 sc-eQTL 9.46e-02 0.167 0.0992 0.276 CD8_TEM L2
ENSG00000213625 LEPROT -662718 sc-eQTL 4.69e-01 0.0746 0.103 0.276 CD8_TEM L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.55e-01 0.0275 0.0878 0.273 MAIT L2
ENSG00000162437 RAVER2 12774 sc-eQTL 7.36e-01 -0.0315 0.0936 0.273 MAIT L2
ENSG00000213625 LEPROT -662718 sc-eQTL 2.19e-01 0.124 0.101 0.273 MAIT L2
ENSG00000116678 LEPR -662783 sc-eQTL 6.72e-01 0.0394 0.093 0.264 NK_CD56bright L2
ENSG00000162434 JAK1 -309885 sc-eQTL 5.71e-02 0.121 0.0632 0.264 NK_CD56bright L2
ENSG00000213625 LEPROT -662718 sc-eQTL 6.07e-01 -0.0539 0.105 0.264 NK_CD56bright L2
ENSG00000116678 LEPR -662783 sc-eQTL 7.97e-01 -0.0254 0.0987 0.269 NK_CD56dim L2
ENSG00000162434 JAK1 -309885 sc-eQTL 8.14e-01 0.0121 0.0515 0.269 NK_CD56dim L2
ENSG00000213625 LEPROT -662718 sc-eQTL 3.71e-01 -0.0933 0.104 0.269 NK_CD56dim L2
ENSG00000116678 LEPR -662783 sc-eQTL 8.35e-01 0.0183 0.0881 0.269 NK_HLA L2
ENSG00000162434 JAK1 -309885 sc-eQTL 6.16e-01 0.0345 0.0686 0.269 NK_HLA L2
ENSG00000213625 LEPROT -662718 sc-eQTL 5.93e-01 0.0569 0.106 0.269 NK_HLA L2
ENSG00000116678 LEPR -662783 sc-eQTL 7.98e-01 0.0249 0.0972 0.269 NK_cytokine L2
ENSG00000162434 JAK1 -309885 sc-eQTL 2.71e-01 0.0622 0.0564 0.269 NK_cytokine L2
ENSG00000213625 LEPROT -662718 sc-eQTL 2.88e-01 -0.109 0.103 0.269 NK_cytokine L2
ENSG00000162434 JAK1 -309885 sc-eQTL 9.45e-01 0.00613 0.0894 0.267 PB L2
ENSG00000213625 LEPROT -662718 sc-eQTL 2.15e-02 0.285 0.122 0.267 PB L2
ENSG00000162434 JAK1 -309885 sc-eQTL 8.92e-03 0.168 0.0637 0.274 Pro_T L2
ENSG00000162437 RAVER2 12774 sc-eQTL 5.11e-01 0.0562 0.0854 0.274 Pro_T L2
ENSG00000213625 LEPROT -662718 sc-eQTL 1.83e-01 -0.134 0.1 0.274 Pro_T L2
ENSG00000158966 CACHD1 287740 sc-eQTL 8.72e-01 0.0123 0.0762 0.271 Treg L2
ENSG00000162434 JAK1 -309885 sc-eQTL 3.13e-01 -0.0818 0.081 0.271 Treg L2
ENSG00000213625 LEPROT -662718 sc-eQTL 7.30e-02 0.188 0.104 0.271 Treg L2
ENSG00000116678 LEPR -662783 sc-eQTL 3.29e-01 -0.0959 0.0981 0.278 cDC L2
ENSG00000162433 AK4 -389680 sc-eQTL 5.84e-01 -0.0476 0.0868 0.278 cDC L2
ENSG00000162434 JAK1 -309885 sc-eQTL 8.54e-01 -0.0149 0.0811 0.278 cDC L2
ENSG00000162437 RAVER2 12774 sc-eQTL 9.48e-01 -0.00587 0.0891 0.278 cDC L2
ENSG00000213625 LEPROT -662718 sc-eQTL 1.63e-01 -0.138 0.0983 0.278 cDC L2
ENSG00000285079 AL513493.1 -946093 sc-eQTL 3.46e-01 0.0335 0.0354 0.278 cDC L2
ENSG00000116678 LEPR -662783 sc-eQTL 6.02e-01 -0.0506 0.0969 0.271 cMono_IL1B L2
ENSG00000162433 AK4 -389680 sc-eQTL 1.34e-01 -0.133 0.0888 0.271 cMono_IL1B L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.63e-01 -0.0244 0.0811 0.271 cMono_IL1B L2
ENSG00000213625 LEPROT -662718 sc-eQTL 6.38e-02 0.121 0.065 0.271 cMono_IL1B L2
ENSG00000116678 LEPR -662783 sc-eQTL 6.71e-01 -0.0408 0.0959 0.271 cMono_S100A L2
ENSG00000162433 AK4 -389680 sc-eQTL 1.78e-01 -0.122 0.0906 0.271 cMono_S100A L2
ENSG00000162434 JAK1 -309885 sc-eQTL 7.90e-01 0.0224 0.0839 0.271 cMono_S100A L2
ENSG00000213625 LEPROT -662718 sc-eQTL 2.23e-01 0.0957 0.0783 0.271 cMono_S100A L2
ENSG00000162434 JAK1 -309885 sc-eQTL 5.32e-01 -0.0774 0.124 0.267 gdT L2
ENSG00000162437 RAVER2 12774 sc-eQTL 8.87e-01 0.0155 0.109 0.267 gdT L2
ENSG00000213625 LEPROT -662718 sc-eQTL 6.93e-01 -0.0516 0.13 0.267 gdT L2
ENSG00000116678 LEPR -662783 sc-eQTL 2.64e-01 0.105 0.0939 0.273 intMono L2
ENSG00000162433 AK4 -389680 sc-eQTL 3.99e-01 -0.0748 0.0886 0.273 intMono L2
ENSG00000162434 JAK1 -309885 sc-eQTL 2.02e-01 0.105 0.0817 0.273 intMono L2
ENSG00000213625 LEPROT -662718 sc-eQTL 5.68e-02 0.15 0.0784 0.273 intMono L2
ENSG00000116678 LEPR -662783 sc-eQTL 1.63e-01 -0.131 0.0933 0.274 ncMono L2
ENSG00000162433 AK4 -389680 sc-eQTL 5.84e-01 0.0458 0.0835 0.274 ncMono L2
ENSG00000162434 JAK1 -309885 sc-eQTL 2.81e-01 0.0729 0.0674 0.274 ncMono L2
ENSG00000213625 LEPROT -662718 sc-eQTL 4.12e-01 0.0787 0.0958 0.274 ncMono L2
ENSG00000116678 LEPR -662783 sc-eQTL 7.79e-01 0.0296 0.105 0.285 pDC L2
ENSG00000162433 AK4 -389680 sc-eQTL 9.66e-01 -0.00292 0.0686 0.285 pDC L2
ENSG00000162434 JAK1 -309885 sc-eQTL 1.59e-01 0.129 0.091 0.285 pDC L2
ENSG00000162437 RAVER2 12774 sc-eQTL 1.57e-01 0.146 0.103 0.285 pDC L2
ENSG00000213625 LEPROT -662718 sc-eQTL 5.61e-01 -0.0662 0.114 0.285 pDC L2
ENSG00000285079 AL513493.1 -946093 sc-eQTL 3.27e-01 -0.0841 0.0856 0.285 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -309885 sc-eQTL 2.09e-01 0.0936 0.0742 0.271 B_Memory LOneK1K
ENSG00000213625 LEPROT -662718 sc-eQTL 6.22e-01 -0.0472 0.0956 0.271 B_Memory LOneK1K
ENSG00000162434 JAK1 -309885 sc-eQTL 5.23e-01 -0.0462 0.0723 0.271 B_Naive LOneK1K
ENSG00000213625 LEPROT -662718 sc-eQTL 9.29e-01 -0.00811 0.0915 0.271 B_Naive LOneK1K
ENSG00000116678 LEPR -662783 sc-eQTL 4.26e-01 -0.0757 0.0949 0.271 CD14_Mono LOneK1K
ENSG00000162433 AK4 -389680 sc-eQTL 1.09e-01 -0.146 0.0904 0.271 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -309885 sc-eQTL 7.73e-01 -0.0219 0.0761 0.271 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -662718 sc-eQTL 3.06e-02 0.137 0.0631 0.271 CD14_Mono LOneK1K
ENSG00000116678 LEPR -662783 sc-eQTL 7.44e-01 -0.0311 0.0953 0.272 CD16_Mono LOneK1K
ENSG00000162433 AK4 -389680 sc-eQTL 9.71e-01 0.00309 0.0863 0.272 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -309885 sc-eQTL 1.30e-01 0.0879 0.0578 0.272 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -662718 sc-eQTL 4.48e-02 0.162 0.0802 0.272 CD16_Mono LOneK1K
ENSG00000116678 LEPR -662783 sc-eQTL 7.80e-01 0.0269 0.0961 0.269 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -309885 sc-eQTL 6.50e-01 0.0205 0.045 0.269 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -662718 sc-eQTL 4.13e-01 -0.0816 0.0995 0.269 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116678 LEPR -662783 pQTL 0.0364 -0.0698 0.0333 0.00116 0.0 0.254
ENSG00000162434 JAK1 -208680 eQTL 2.04e-13 0.125 0.0168 0.0 0.0 0.251
ENSG00000162437 RAVER2 12774 eQTL 1.12e-19 0.232 0.025 0.0 0.0 0.251

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -208680 1.64e-06 2.15e-06 2.19e-07 1.3e-06 4.27e-07 6.45e-07 1.24e-06 3.83e-07 1.71e-06 7.04e-07 1.97e-06 1.32e-06 2.58e-06 5.06e-07 3.61e-07 1.02e-06 1.12e-06 1.18e-06 5.86e-07 4.68e-07 6.58e-07 1.87e-06 1.61e-06 7.64e-07 2.39e-06 9.13e-07 9.86e-07 8.7e-07 1.66e-06 1.43e-06 7.9e-07 2.71e-07 2.96e-07 6.23e-07 7.08e-07 5.62e-07 7.58e-07 3.5e-07 5.37e-07 2.43e-07 3.53e-07 2.23e-06 3.43e-07 1.31e-07 3.55e-07 3.05e-07 3.64e-07 1.41e-07 2.59e-07
ENSG00000162437 RAVER2 12774 1.86e-05 2.15e-05 4.31e-06 1.24e-05 3.92e-06 1.01e-05 2.91e-05 3.46e-06 1.9e-05 9.88e-06 2.51e-05 9.87e-06 3.56e-05 8.97e-06 5.45e-06 1.17e-05 1.12e-05 1.79e-05 6.52e-06 5.36e-06 9.77e-06 2.09e-05 2.15e-05 7.73e-06 3.2e-05 5.96e-06 8.4e-06 8.71e-06 2.28e-05 2.47e-05 1.29e-05 1.64e-06 2.35e-06 6.6e-06 9.01e-06 5.16e-06 2.82e-06 2.99e-06 4.25e-06 3.15e-06 1.75e-06 2.6e-05 2.66e-06 3.84e-07 2.1e-06 2.95e-06 3.35e-06 1.44e-06 1.46e-06