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Genes within 1Mb (chr1:64734547:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -333207 sc-eQTL 9.85e-01 0.00113 0.0595 0.267 B L1
ENSG00000213625 LEPROT -686040 sc-eQTL 6.03e-01 -0.0396 0.0759 0.267 B L1
ENSG00000158966 CACHD1 264418 sc-eQTL 8.10e-01 -0.0136 0.0566 0.267 CD4T L1
ENSG00000162434 JAK1 -333207 sc-eQTL 6.43e-01 -0.0275 0.0592 0.267 CD4T L1
ENSG00000213625 LEPROT -686040 sc-eQTL 9.53e-01 0.00552 0.0927 0.267 CD4T L1
ENSG00000116678 LEPR -686105 sc-eQTL 1.15e-01 -0.154 0.0974 0.267 CD8T L1
ENSG00000158966 CACHD1 264418 sc-eQTL 3.13e-01 -0.0487 0.0481 0.267 CD8T L1
ENSG00000162434 JAK1 -333207 sc-eQTL 8.17e-01 -0.0176 0.076 0.267 CD8T L1
ENSG00000213625 LEPROT -686040 sc-eQTL 4.14e-01 0.0823 0.101 0.267 CD8T L1
ENSG00000116678 LEPR -686105 sc-eQTL 3.00e-01 -0.102 0.0978 0.273 DC L1
ENSG00000162433 AK4 -413002 sc-eQTL 1.19e-01 -0.128 0.082 0.273 DC L1
ENSG00000162434 JAK1 -333207 sc-eQTL 7.14e-01 0.0251 0.0686 0.273 DC L1
ENSG00000162437 RAVER2 -10548 sc-eQTL 8.66e-01 0.0149 0.0879 0.273 DC L1
ENSG00000213625 LEPROT -686040 sc-eQTL 7.42e-01 -0.0321 0.0973 0.273 DC L1
ENSG00000285079 AL513493.1 -969415 sc-eQTL 5.25e-01 -0.0333 0.0523 0.273 DC L1
ENSG00000116678 LEPR -686105 sc-eQTL 5.16e-01 -0.0631 0.0969 0.267 Mono L1
ENSG00000162433 AK4 -413002 sc-eQTL 1.22e-01 -0.137 0.0883 0.267 Mono L1
ENSG00000162434 JAK1 -333207 sc-eQTL 4.93e-01 0.0434 0.0632 0.267 Mono L1
ENSG00000213625 LEPROT -686040 sc-eQTL 1.56e-02 0.151 0.0618 0.267 Mono L1
ENSG00000116678 LEPR -686105 sc-eQTL 6.25e-01 0.0462 0.0945 0.266 NK L1
ENSG00000162434 JAK1 -333207 sc-eQTL 5.37e-01 0.0276 0.0446 0.266 NK L1
ENSG00000213625 LEPROT -686040 sc-eQTL 5.94e-01 -0.0544 0.102 0.266 NK L1
ENSG00000162434 JAK1 -333207 sc-eQTL 2.44e-01 0.0773 0.0661 0.267 Other_T L1
ENSG00000162437 RAVER2 -10548 sc-eQTL 4.89e-01 -0.0668 0.0963 0.267 Other_T L1
ENSG00000213625 LEPROT -686040 sc-eQTL 6.80e-01 0.043 0.104 0.267 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -333207 sc-eQTL 9.18e-02 0.175 0.103 0.263 B_Activated L2
ENSG00000213625 LEPROT -686040 sc-eQTL 7.52e-01 -0.0344 0.108 0.263 B_Activated L2
ENSG00000162434 JAK1 -333207 sc-eQTL 5.16e-01 -0.0557 0.0855 0.268 B_Intermediate L2
ENSG00000213625 LEPROT -686040 sc-eQTL 3.14e-01 -0.101 0.1 0.268 B_Intermediate L2
ENSG00000162434 JAK1 -333207 sc-eQTL 1.74e-02 0.207 0.0862 0.269 B_Memory L2
ENSG00000213625 LEPROT -686040 sc-eQTL 6.24e-01 0.0498 0.101 0.269 B_Memory L2
ENSG00000162434 JAK1 -333207 sc-eQTL 3.73e-01 -0.0672 0.0752 0.267 B_Naive1 L2
ENSG00000213625 LEPROT -686040 sc-eQTL 4.34e-01 -0.077 0.0981 0.267 B_Naive1 L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.93e-01 0.0316 0.0798 0.268 B_Naive2 L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.96e-01 0.051 0.0962 0.268 B_Naive2 L2
ENSG00000158966 CACHD1 264418 sc-eQTL 7.66e-01 -0.0115 0.0385 0.273 CD4_CTL L2
ENSG00000162434 JAK1 -333207 sc-eQTL 7.32e-01 0.0326 0.095 0.273 CD4_CTL L2
ENSG00000213625 LEPROT -686040 sc-eQTL 6.70e-01 -0.0466 0.109 0.273 CD4_CTL L2
ENSG00000158966 CACHD1 264418 sc-eQTL 8.40e-01 -0.0114 0.0567 0.267 CD4_Naive L2
ENSG00000162434 JAK1 -333207 sc-eQTL 5.30e-01 -0.0364 0.0579 0.267 CD4_Naive L2
ENSG00000213625 LEPROT -686040 sc-eQTL 9.59e-01 -0.00481 0.0939 0.267 CD4_Naive L2
ENSG00000158966 CACHD1 264418 sc-eQTL 7.46e-01 -0.0259 0.0799 0.267 CD4_TCM L2
ENSG00000162434 JAK1 -333207 sc-eQTL 9.39e-01 0.00503 0.0654 0.267 CD4_TCM L2
ENSG00000213625 LEPROT -686040 sc-eQTL 8.41e-01 -0.0191 0.0949 0.267 CD4_TCM L2
ENSG00000158966 CACHD1 264418 sc-eQTL 7.95e-01 0.0161 0.0618 0.267 CD4_TEM L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.07e-01 -0.0452 0.0879 0.267 CD4_TEM L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.47e-01 0.063 0.104 0.267 CD4_TEM L2
ENSG00000116678 LEPR -686105 sc-eQTL 2.09e-02 -0.22 0.0947 0.267 CD8_CTL L2
ENSG00000158966 CACHD1 264418 sc-eQTL 2.05e-01 -0.0546 0.043 0.267 CD8_CTL L2
ENSG00000162434 JAK1 -333207 sc-eQTL 7.71e-01 0.0234 0.0805 0.267 CD8_CTL L2
ENSG00000213625 LEPROT -686040 sc-eQTL 1.28e-01 0.15 0.0979 0.267 CD8_CTL L2
ENSG00000116678 LEPR -686105 sc-eQTL 8.39e-01 0.0198 0.0974 0.267 CD8_Naive L2
ENSG00000158966 CACHD1 264418 sc-eQTL 2.47e-01 -0.0781 0.0673 0.267 CD8_Naive L2
ENSG00000162434 JAK1 -333207 sc-eQTL 2.13e-01 -0.101 0.0809 0.267 CD8_Naive L2
ENSG00000213625 LEPROT -686040 sc-eQTL 7.79e-01 0.0279 0.0995 0.267 CD8_Naive L2
ENSG00000116678 LEPR -686105 sc-eQTL 5.04e-01 -0.066 0.0987 0.269 CD8_TCM L2
ENSG00000158966 CACHD1 264418 sc-eQTL 3.52e-01 -0.0496 0.0532 0.269 CD8_TCM L2
ENSG00000162434 JAK1 -333207 sc-eQTL 9.05e-01 0.0102 0.0858 0.269 CD8_TCM L2
ENSG00000213625 LEPROT -686040 sc-eQTL 3.22e-01 0.106 0.107 0.269 CD8_TCM L2
ENSG00000116678 LEPR -686105 sc-eQTL 5.03e-01 0.0599 0.0891 0.272 CD8_TEM L2
ENSG00000158966 CACHD1 264418 sc-eQTL 3.12e-01 0.0216 0.0213 0.272 CD8_TEM L2
ENSG00000162434 JAK1 -333207 sc-eQTL 1.65e-01 0.14 0.1 0.272 CD8_TEM L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.65e-01 0.0599 0.104 0.272 CD8_TEM L2
ENSG00000162434 JAK1 -333207 sc-eQTL 7.57e-01 0.0275 0.0887 0.268 MAIT L2
ENSG00000162437 RAVER2 -10548 sc-eQTL 7.76e-01 -0.0269 0.0945 0.268 MAIT L2
ENSG00000213625 LEPROT -686040 sc-eQTL 2.00e-01 0.131 0.102 0.268 MAIT L2
ENSG00000116678 LEPR -686105 sc-eQTL 6.05e-01 0.0487 0.094 0.26 NK_CD56bright L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.45e-02 0.119 0.0639 0.26 NK_CD56bright L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.92e-01 -0.0567 0.106 0.26 NK_CD56bright L2
ENSG00000116678 LEPR -686105 sc-eQTL 8.23e-01 -0.0224 0.0997 0.265 NK_CD56dim L2
ENSG00000162434 JAK1 -333207 sc-eQTL 8.53e-01 0.00966 0.0521 0.265 NK_CD56dim L2
ENSG00000213625 LEPROT -686040 sc-eQTL 4.26e-01 -0.0839 0.105 0.265 NK_CD56dim L2
ENSG00000116678 LEPR -686105 sc-eQTL 8.81e-01 0.0134 0.0893 0.265 NK_HLA L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.88e-01 0.028 0.0695 0.265 NK_HLA L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.82e-01 0.0595 0.108 0.265 NK_HLA L2
ENSG00000116678 LEPR -686105 sc-eQTL 7.86e-01 0.0267 0.0983 0.265 NK_cytokine L2
ENSG00000162434 JAK1 -333207 sc-eQTL 2.96e-01 0.0598 0.0571 0.265 NK_cytokine L2
ENSG00000213625 LEPROT -686040 sc-eQTL 2.47e-01 -0.12 0.104 0.265 NK_cytokine L2
ENSG00000162434 JAK1 -333207 sc-eQTL 9.45e-01 0.00613 0.0894 0.267 PB L2
ENSG00000213625 LEPROT -686040 sc-eQTL 2.15e-02 0.285 0.122 0.267 PB L2
ENSG00000162434 JAK1 -333207 sc-eQTL 8.78e-03 0.17 0.0643 0.27 Pro_T L2
ENSG00000162437 RAVER2 -10548 sc-eQTL 4.25e-01 0.0689 0.0862 0.27 Pro_T L2
ENSG00000213625 LEPROT -686040 sc-eQTL 1.32e-01 -0.153 0.101 0.27 Pro_T L2
ENSG00000158966 CACHD1 264418 sc-eQTL 8.86e-01 0.0111 0.077 0.267 Treg L2
ENSG00000162434 JAK1 -333207 sc-eQTL 3.33e-01 -0.0793 0.0818 0.267 Treg L2
ENSG00000213625 LEPROT -686040 sc-eQTL 8.78e-02 0.181 0.106 0.267 Treg L2
ENSG00000116678 LEPR -686105 sc-eQTL 2.39e-01 -0.117 0.099 0.273 cDC L2
ENSG00000162433 AK4 -413002 sc-eQTL 4.31e-01 -0.0692 0.0877 0.273 cDC L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.95e-01 -0.0322 0.0819 0.273 cDC L2
ENSG00000162437 RAVER2 -10548 sc-eQTL 8.61e-01 -0.0158 0.0901 0.273 cDC L2
ENSG00000213625 LEPROT -686040 sc-eQTL 1.85e-01 -0.132 0.0995 0.273 cDC L2
ENSG00000285079 AL513493.1 -969415 sc-eQTL 3.16e-01 0.036 0.0358 0.273 cDC L2
ENSG00000116678 LEPR -686105 sc-eQTL 6.01e-01 -0.0511 0.0976 0.267 cMono_IL1B L2
ENSG00000162433 AK4 -413002 sc-eQTL 1.12e-01 -0.143 0.0894 0.267 cMono_IL1B L2
ENSG00000162434 JAK1 -333207 sc-eQTL 6.74e-01 -0.0344 0.0817 0.267 cMono_IL1B L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.03e-02 0.129 0.0655 0.267 cMono_IL1B L2
ENSG00000116678 LEPR -686105 sc-eQTL 8.27e-01 -0.0211 0.0966 0.267 cMono_S100A L2
ENSG00000162433 AK4 -413002 sc-eQTL 2.08e-01 -0.115 0.0913 0.267 cMono_S100A L2
ENSG00000162434 JAK1 -333207 sc-eQTL 8.55e-01 0.0155 0.0846 0.267 cMono_S100A L2
ENSG00000213625 LEPROT -686040 sc-eQTL 2.42e-01 0.0925 0.0789 0.267 cMono_S100A L2
ENSG00000162434 JAK1 -333207 sc-eQTL 4.41e-01 -0.0976 0.126 0.261 gdT L2
ENSG00000162437 RAVER2 -10548 sc-eQTL 7.78e-01 0.0314 0.111 0.261 gdT L2
ENSG00000213625 LEPROT -686040 sc-eQTL 8.96e-01 -0.0175 0.133 0.261 gdT L2
ENSG00000116678 LEPR -686105 sc-eQTL 2.09e-01 0.119 0.0946 0.269 intMono L2
ENSG00000162433 AK4 -413002 sc-eQTL 3.88e-01 -0.0772 0.0893 0.269 intMono L2
ENSG00000162434 JAK1 -333207 sc-eQTL 2.45e-01 0.0962 0.0825 0.269 intMono L2
ENSG00000213625 LEPROT -686040 sc-eQTL 1.13e-01 0.126 0.0793 0.269 intMono L2
ENSG00000116678 LEPR -686105 sc-eQTL 1.89e-01 -0.124 0.0943 0.269 ncMono L2
ENSG00000162433 AK4 -413002 sc-eQTL 6.79e-01 0.035 0.0844 0.269 ncMono L2
ENSG00000162434 JAK1 -333207 sc-eQTL 2.93e-01 0.0718 0.0682 0.269 ncMono L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.85e-01 0.0531 0.0969 0.269 ncMono L2
ENSG00000116678 LEPR -686105 sc-eQTL 9.47e-01 -0.00714 0.106 0.28 pDC L2
ENSG00000162433 AK4 -413002 sc-eQTL 9.32e-01 -0.00596 0.0694 0.28 pDC L2
ENSG00000162434 JAK1 -333207 sc-eQTL 2.41e-01 0.109 0.0923 0.28 pDC L2
ENSG00000162437 RAVER2 -10548 sc-eQTL 1.94e-01 0.135 0.104 0.28 pDC L2
ENSG00000213625 LEPROT -686040 sc-eQTL 5.08e-01 -0.0763 0.115 0.28 pDC L2
ENSG00000285079 AL513493.1 -969415 sc-eQTL 4.37e-01 -0.0676 0.0867 0.28 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -333207 sc-eQTL 2.88e-01 0.0799 0.0751 0.267 B_Memory LOneK1K
ENSG00000213625 LEPROT -686040 sc-eQTL 6.44e-01 -0.0447 0.0966 0.267 B_Memory LOneK1K
ENSG00000162434 JAK1 -333207 sc-eQTL 5.11e-01 -0.0481 0.073 0.267 B_Naive LOneK1K
ENSG00000213625 LEPROT -686040 sc-eQTL 6.75e-01 -0.0387 0.0923 0.267 B_Naive LOneK1K
ENSG00000116678 LEPR -686105 sc-eQTL 4.97e-01 -0.0651 0.0956 0.267 CD14_Mono LOneK1K
ENSG00000162433 AK4 -413002 sc-eQTL 1.15e-01 -0.144 0.0911 0.267 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -333207 sc-eQTL 6.91e-01 -0.0305 0.0766 0.267 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -686040 sc-eQTL 2.69e-02 0.142 0.0635 0.267 CD14_Mono LOneK1K
ENSG00000116678 LEPR -686105 sc-eQTL 8.61e-01 -0.0169 0.0961 0.267 CD16_Mono LOneK1K
ENSG00000162433 AK4 -413002 sc-eQTL 9.14e-01 -0.00941 0.087 0.267 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -333207 sc-eQTL 1.66e-01 0.081 0.0583 0.267 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -686040 sc-eQTL 1.12e-01 0.129 0.0811 0.267 CD16_Mono LOneK1K
ENSG00000116678 LEPR -686105 sc-eQTL 7.69e-01 0.0285 0.0971 0.265 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -333207 sc-eQTL 7.15e-01 0.0166 0.0455 0.265 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -686040 sc-eQTL 4.31e-01 -0.0793 0.101 0.265 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116678 LEPR -686105 pQTL 0.0444 -0.0676 0.0336 0.00105 0.0 0.253
ENSG00000162434 JAK1 -232002 eQTL 3.3e-13 0.125 0.017 0.0 0.0 0.251
ENSG00000162437 RAVER2 -10548 eQTL 1.27e-19 0.233 0.0251 0.0 0.0 0.251

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -232002 1.28e-06 1.39e-06 3.05e-07 1.07e-06 2.66e-07 4.92e-07 1.58e-06 3.49e-07 1.4e-06 4.11e-07 1.89e-06 7.92e-07 2.43e-06 2.83e-07 5.65e-07 8.25e-07 9.15e-07 6.25e-07 8.35e-07 6.82e-07 4.39e-07 1.56e-06 9.35e-07 6.31e-07 2.38e-06 4.36e-07 7.66e-07 7.01e-07 1.33e-06 1.22e-06 7.47e-07 5.06e-08 2.08e-07 7.03e-07 5.3e-07 4.37e-07 4.77e-07 1.67e-07 3.95e-07 2.42e-07 2.75e-07 1.57e-06 5.58e-08 9.61e-08 1.83e-07 1.27e-07 2.08e-07 8.48e-08 5.32e-08
ENSG00000162437 RAVER2 -10548 1.65e-05 2.43e-05 3.51e-06 1.24e-05 3.05e-06 8.76e-06 2.73e-05 3.29e-06 1.78e-05 8.98e-06 2.41e-05 9.08e-06 3.65e-05 8.97e-06 5.38e-06 1.03e-05 1.07e-05 1.52e-05 5.99e-06 4.26e-06 8.39e-06 1.84e-05 1.98e-05 5.39e-06 3.13e-05 5.37e-06 8.03e-06 7.8e-06 2.33e-05 1.91e-05 1.29e-05 1.19e-06 1.74e-06 4.84e-06 7.8e-06 4.4e-06 1.89e-06 2.7e-06 3.4e-06 2.3e-06 1.1e-06 2.52e-05 2.55e-06 2.2e-07 1.29e-06 2.74e-06 2.9e-06 1.2e-06 8.01e-07