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Genes within 1Mb (chr1:64720614:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -347140 sc-eQTL 7.56e-01 0.0164 0.0528 0.4 B L1
ENSG00000213625 LEPROT -699973 sc-eQTL 7.55e-01 0.0211 0.0674 0.4 B L1
ENSG00000158966 CACHD1 250485 sc-eQTL 6.47e-01 -0.0225 0.049 0.4 CD4T L1
ENSG00000162434 JAK1 -347140 sc-eQTL 6.16e-01 0.0257 0.0513 0.4 CD4T L1
ENSG00000213625 LEPROT -699973 sc-eQTL 6.32e-02 0.149 0.0796 0.4 CD4T L1
ENSG00000116678 LEPR -700038 sc-eQTL 4.10e-01 0.0723 0.0876 0.4 CD8T L1
ENSG00000158966 CACHD1 250485 sc-eQTL 2.99e-01 -0.0448 0.0431 0.4 CD8T L1
ENSG00000162434 JAK1 -347140 sc-eQTL 3.37e-01 0.0654 0.0679 0.4 CD8T L1
ENSG00000213625 LEPROT -699973 sc-eQTL 4.68e-01 0.0656 0.0901 0.4 CD8T L1
ENSG00000116678 LEPR -700038 sc-eQTL 4.48e-01 0.0678 0.0892 0.396 DC L1
ENSG00000162433 AK4 -426935 sc-eQTL 9.21e-01 0.00751 0.0751 0.396 DC L1
ENSG00000162434 JAK1 -347140 sc-eQTL 9.70e-01 -0.00237 0.0625 0.396 DC L1
ENSG00000162437 RAVER2 -24481 sc-eQTL 6.52e-01 0.0361 0.08 0.396 DC L1
ENSG00000213625 LEPROT -699973 sc-eQTL 5.27e-03 0.245 0.0869 0.396 DC L1
ENSG00000285079 AL513493.1 -983348 sc-eQTL 5.53e-01 0.0283 0.0477 0.396 DC L1
ENSG00000116678 LEPR -700038 sc-eQTL 3.79e-01 0.0768 0.0871 0.4 Mono L1
ENSG00000162433 AK4 -426935 sc-eQTL 1.56e-01 0.113 0.0795 0.4 Mono L1
ENSG00000162434 JAK1 -347140 sc-eQTL 3.48e-01 -0.0534 0.0569 0.4 Mono L1
ENSG00000213625 LEPROT -699973 sc-eQTL 5.19e-01 0.0364 0.0564 0.4 Mono L1
ENSG00000116678 LEPR -700038 sc-eQTL 4.08e-01 -0.0683 0.0824 0.399 NK L1
ENSG00000162434 JAK1 -347140 sc-eQTL 1.48e-02 -0.0945 0.0385 0.399 NK L1
ENSG00000213625 LEPROT -699973 sc-eQTL 3.92e-02 0.183 0.0881 0.399 NK L1
ENSG00000162434 JAK1 -347140 sc-eQTL 4.04e-01 0.0483 0.0578 0.4 Other_T L1
ENSG00000162437 RAVER2 -24481 sc-eQTL 4.91e-02 0.165 0.0833 0.4 Other_T L1
ENSG00000213625 LEPROT -699973 sc-eQTL 8.46e-01 -0.0177 0.0909 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -347140 sc-eQTL 4.04e-02 -0.186 0.09 0.393 B_Activated L2
ENSG00000213625 LEPROT -699973 sc-eQTL 5.31e-01 0.0597 0.0951 0.393 B_Activated L2
ENSG00000162434 JAK1 -347140 sc-eQTL 4.33e-01 -0.0604 0.0768 0.399 B_Intermediate L2
ENSG00000213625 LEPROT -699973 sc-eQTL 1.12e-01 0.143 0.0896 0.399 B_Intermediate L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.05e-01 -0.124 0.076 0.399 B_Memory L2
ENSG00000213625 LEPROT -699973 sc-eQTL 7.70e-01 -0.026 0.0889 0.399 B_Memory L2
ENSG00000162434 JAK1 -347140 sc-eQTL 5.04e-01 0.0454 0.0678 0.4 B_Naive1 L2
ENSG00000213625 LEPROT -699973 sc-eQTL 5.58e-01 0.052 0.0885 0.4 B_Naive1 L2
ENSG00000162434 JAK1 -347140 sc-eQTL 2.10e-01 0.0894 0.071 0.399 B_Naive2 L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.45e-01 -0.0812 0.0858 0.399 B_Naive2 L2
ENSG00000158966 CACHD1 250485 sc-eQTL 9.24e-01 -0.00327 0.0341 0.389 CD4_CTL L2
ENSG00000162434 JAK1 -347140 sc-eQTL 6.37e-01 0.0397 0.0841 0.389 CD4_CTL L2
ENSG00000213625 LEPROT -699973 sc-eQTL 6.45e-01 0.0446 0.0966 0.389 CD4_CTL L2
ENSG00000158966 CACHD1 250485 sc-eQTL 5.60e-01 -0.0288 0.0494 0.4 CD4_Naive L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.09e-01 0.0122 0.0505 0.4 CD4_Naive L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.61e-02 0.171 0.081 0.4 CD4_Naive L2
ENSG00000158966 CACHD1 250485 sc-eQTL 6.86e-01 -0.0283 0.0698 0.4 CD4_TCM L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.94e-01 -0.00765 0.0572 0.4 CD4_TCM L2
ENSG00000213625 LEPROT -699973 sc-eQTL 1.30e-01 0.125 0.0825 0.4 CD4_TCM L2
ENSG00000158966 CACHD1 250485 sc-eQTL 6.47e-01 -0.0247 0.0538 0.4 CD4_TEM L2
ENSG00000162434 JAK1 -347140 sc-eQTL 3.57e-01 0.0705 0.0763 0.4 CD4_TEM L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.52e-01 0.0845 0.0906 0.4 CD4_TEM L2
ENSG00000116678 LEPR -700038 sc-eQTL 8.19e-01 0.0195 0.0852 0.4 CD8_CTL L2
ENSG00000158966 CACHD1 250485 sc-eQTL 8.03e-01 0.00954 0.0383 0.4 CD8_CTL L2
ENSG00000162434 JAK1 -347140 sc-eQTL 4.89e-02 0.14 0.0709 0.4 CD8_CTL L2
ENSG00000213625 LEPROT -699973 sc-eQTL 6.19e-01 -0.0435 0.0874 0.4 CD8_CTL L2
ENSG00000116678 LEPR -700038 sc-eQTL 9.94e-01 -0.000678 0.0863 0.4 CD8_Naive L2
ENSG00000158966 CACHD1 250485 sc-eQTL 4.39e-01 -0.0463 0.0597 0.4 CD8_Naive L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.27e-01 -0.0157 0.0719 0.4 CD8_Naive L2
ENSG00000213625 LEPROT -699973 sc-eQTL 7.39e-02 0.157 0.0875 0.4 CD8_Naive L2
ENSG00000116678 LEPR -700038 sc-eQTL 5.08e-01 0.0567 0.0854 0.394 CD8_TCM L2
ENSG00000158966 CACHD1 250485 sc-eQTL 5.59e-01 0.027 0.0462 0.394 CD8_TCM L2
ENSG00000162434 JAK1 -347140 sc-eQTL 9.31e-01 -0.00645 0.0743 0.394 CD8_TCM L2
ENSG00000213625 LEPROT -699973 sc-eQTL 9.09e-01 -0.0106 0.0927 0.394 CD8_TCM L2
ENSG00000116678 LEPR -700038 sc-eQTL 1.15e-01 -0.126 0.0794 0.386 CD8_TEM L2
ENSG00000158966 CACHD1 250485 sc-eQTL 9.91e-01 -0.00021 0.0191 0.386 CD8_TEM L2
ENSG00000162434 JAK1 -347140 sc-eQTL 3.37e-01 0.0868 0.0902 0.386 CD8_TEM L2
ENSG00000213625 LEPROT -699973 sc-eQTL 1.48e-01 -0.134 0.0926 0.386 CD8_TEM L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.72e-02 0.184 0.0766 0.394 MAIT L2
ENSG00000162437 RAVER2 -24481 sc-eQTL 2.74e-01 0.0905 0.0825 0.394 MAIT L2
ENSG00000213625 LEPROT -699973 sc-eQTL 9.66e-01 0.00377 0.0894 0.394 MAIT L2
ENSG00000116678 LEPR -700038 sc-eQTL 2.40e-01 -0.0971 0.0824 0.4 NK_CD56bright L2
ENSG00000162434 JAK1 -347140 sc-eQTL 2.32e-01 -0.0676 0.0564 0.4 NK_CD56bright L2
ENSG00000213625 LEPROT -699973 sc-eQTL 4.25e-02 0.188 0.0921 0.4 NK_CD56bright L2
ENSG00000116678 LEPR -700038 sc-eQTL 9.46e-01 -0.00588 0.0873 0.399 NK_CD56dim L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.61e-02 -0.109 0.045 0.399 NK_CD56dim L2
ENSG00000213625 LEPROT -699973 sc-eQTL 4.00e-01 0.0776 0.0921 0.399 NK_CD56dim L2
ENSG00000116678 LEPR -700038 sc-eQTL 8.32e-01 -0.0166 0.0783 0.402 NK_HLA L2
ENSG00000162434 JAK1 -347140 sc-eQTL 9.78e-01 -0.00166 0.061 0.402 NK_HLA L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.51e-01 0.0881 0.0943 0.402 NK_HLA L2
ENSG00000116678 LEPR -700038 sc-eQTL 2.39e-01 -0.0996 0.0844 0.399 NK_cytokine L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.03e-01 -0.0802 0.049 0.399 NK_cytokine L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.31e-02 0.19 0.0887 0.399 NK_cytokine L2
ENSG00000162434 JAK1 -347140 sc-eQTL 2.27e-02 -0.183 0.0793 0.389 PB L2
ENSG00000213625 LEPROT -699973 sc-eQTL 5.74e-01 0.064 0.114 0.389 PB L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.87e-01 -0.0082 0.0577 0.4 Pro_T L2
ENSG00000162437 RAVER2 -24481 sc-eQTL 6.67e-01 -0.0328 0.0761 0.4 Pro_T L2
ENSG00000213625 LEPROT -699973 sc-eQTL 5.73e-01 0.0506 0.0898 0.4 Pro_T L2
ENSG00000158966 CACHD1 250485 sc-eQTL 7.27e-01 0.0236 0.0675 0.4 Treg L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.50e-01 -0.0136 0.072 0.4 Treg L2
ENSG00000213625 LEPROT -699973 sc-eQTL 7.15e-01 -0.0341 0.0933 0.4 Treg L2
ENSG00000116678 LEPR -700038 sc-eQTL 3.92e-01 0.0773 0.0901 0.402 cDC L2
ENSG00000162433 AK4 -426935 sc-eQTL 3.33e-01 -0.0772 0.0795 0.402 cDC L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.48e-01 -0.108 0.074 0.402 cDC L2
ENSG00000162437 RAVER2 -24481 sc-eQTL 5.85e-01 0.0447 0.0817 0.402 cDC L2
ENSG00000213625 LEPROT -699973 sc-eQTL 3.75e-02 0.188 0.0896 0.402 cDC L2
ENSG00000285079 AL513493.1 -983348 sc-eQTL 6.48e-01 -0.0149 0.0326 0.402 cDC L2
ENSG00000116678 LEPR -700038 sc-eQTL 9.97e-02 0.144 0.0871 0.4 cMono_IL1B L2
ENSG00000162433 AK4 -426935 sc-eQTL 1.27e-01 0.123 0.0803 0.4 cMono_IL1B L2
ENSG00000162434 JAK1 -347140 sc-eQTL 8.91e-01 -0.0101 0.0734 0.4 cMono_IL1B L2
ENSG00000213625 LEPROT -699973 sc-eQTL 2.97e-01 0.0618 0.0591 0.4 cMono_IL1B L2
ENSG00000116678 LEPR -700038 sc-eQTL 4.75e-01 0.0619 0.0865 0.4 cMono_S100A L2
ENSG00000162433 AK4 -426935 sc-eQTL 2.71e-01 0.0904 0.0819 0.4 cMono_S100A L2
ENSG00000162434 JAK1 -347140 sc-eQTL 6.45e-01 0.0349 0.0758 0.4 cMono_S100A L2
ENSG00000213625 LEPROT -699973 sc-eQTL 4.20e-01 0.0572 0.0708 0.4 cMono_S100A L2
ENSG00000162434 JAK1 -347140 sc-eQTL 2.13e-01 0.129 0.103 0.397 gdT L2
ENSG00000162437 RAVER2 -24481 sc-eQTL 9.19e-01 0.00923 0.0911 0.397 gdT L2
ENSG00000213625 LEPROT -699973 sc-eQTL 5.32e-01 -0.0683 0.109 0.397 gdT L2
ENSG00000116678 LEPR -700038 sc-eQTL 8.00e-01 0.0214 0.0845 0.402 intMono L2
ENSG00000162433 AK4 -426935 sc-eQTL 2.66e-01 0.0886 0.0794 0.402 intMono L2
ENSG00000162434 JAK1 -347140 sc-eQTL 1.54e-01 -0.105 0.0733 0.402 intMono L2
ENSG00000213625 LEPROT -699973 sc-eQTL 8.73e-01 -0.0114 0.071 0.402 intMono L2
ENSG00000116678 LEPR -700038 sc-eQTL 6.21e-01 -0.0422 0.0853 0.4 ncMono L2
ENSG00000162433 AK4 -426935 sc-eQTL 2.66e-01 -0.0847 0.0759 0.4 ncMono L2
ENSG00000162434 JAK1 -347140 sc-eQTL 6.16e-01 -0.0309 0.0615 0.4 ncMono L2
ENSG00000213625 LEPROT -699973 sc-eQTL 7.34e-01 -0.0297 0.0873 0.4 ncMono L2
ENSG00000116678 LEPR -700038 sc-eQTL 5.22e-01 0.0599 0.0934 0.398 pDC L2
ENSG00000162433 AK4 -426935 sc-eQTL 2.34e-01 -0.0724 0.0607 0.398 pDC L2
ENSG00000162434 JAK1 -347140 sc-eQTL 9.67e-01 0.00341 0.0814 0.398 pDC L2
ENSG00000162437 RAVER2 -24481 sc-eQTL 5.18e-01 -0.0594 0.0916 0.398 pDC L2
ENSG00000213625 LEPROT -699973 sc-eQTL 2.13e-01 0.126 0.1 0.398 pDC L2
ENSG00000285079 AL513493.1 -983348 sc-eQTL 5.84e-01 0.0418 0.0762 0.398 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -347140 sc-eQTL 8.00e-02 -0.119 0.0676 0.4 B_Memory LOneK1K
ENSG00000213625 LEPROT -699973 sc-eQTL 3.65e-01 0.0793 0.0873 0.4 B_Memory LOneK1K
ENSG00000162434 JAK1 -347140 sc-eQTL 2.03e-01 0.0832 0.0652 0.4 B_Naive LOneK1K
ENSG00000213625 LEPROT -699973 sc-eQTL 9.84e-01 0.00171 0.0827 0.4 B_Naive LOneK1K
ENSG00000116678 LEPR -700038 sc-eQTL 1.24e-01 0.132 0.0857 0.4 CD14_Mono LOneK1K
ENSG00000162433 AK4 -426935 sc-eQTL 1.38e-01 0.122 0.082 0.4 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -347140 sc-eQTL 7.94e-01 0.018 0.069 0.4 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -699973 sc-eQTL 2.71e-01 0.0636 0.0577 0.4 CD14_Mono LOneK1K
ENSG00000116678 LEPR -700038 sc-eQTL 6.66e-01 -0.0374 0.0865 0.397 CD16_Mono LOneK1K
ENSG00000162433 AK4 -426935 sc-eQTL 8.32e-01 0.0167 0.0784 0.397 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -347140 sc-eQTL 1.30e-01 -0.0796 0.0525 0.397 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -699973 sc-eQTL 4.43e-01 -0.0565 0.0734 0.397 CD16_Mono LOneK1K
ENSG00000116678 LEPR -700038 sc-eQTL 5.73e-01 -0.0481 0.0852 0.399 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -347140 sc-eQTL 3.07e-02 -0.086 0.0396 0.399 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -699973 sc-eQTL 1.32e-01 0.133 0.088 0.399 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -245935 eQTL 0.000463 -0.0551 0.0157 0.0 0.0 0.386
ENSG00000213625 LEPROT -699973 eQTL 0.0474 -0.0408 0.0205 0.0 0.0 0.386

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -245935 1.3e-06 1.13e-06 2.91e-07 1.16e-06 3.67e-07 5.99e-07 1.48e-06 4.2e-07 1.66e-06 5.93e-07 1.95e-06 8.48e-07 2.5e-06 2.92e-07 4.95e-07 9.54e-07 9.36e-07 9.65e-07 7.14e-07 5.21e-07 7.55e-07 1.91e-06 1.12e-06 5.89e-07 2.23e-06 7.6e-07 9.72e-07 9.36e-07 1.62e-06 1.2e-06 8e-07 3.03e-07 2.86e-07 5.79e-07 5.38e-07 5.06e-07 6.69e-07 3.1e-07 4.84e-07 3e-07 2.69e-07 1.64e-06 1.94e-07 1.38e-07 3.04e-07 2.14e-07 2.71e-07 1.15e-07 2.6e-07