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Genes within 1Mb (chr1:64709085:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -358669 sc-eQTL 3.66e-01 -0.0527 0.0582 0.729 B L1
ENSG00000213625 LEPROT -711502 sc-eQTL 4.07e-01 -0.0618 0.0743 0.729 B L1
ENSG00000158966 CACHD1 238956 sc-eQTL 5.82e-01 0.03 0.0544 0.729 CD4T L1
ENSG00000162434 JAK1 -358669 sc-eQTL 6.55e-01 0.0256 0.0571 0.729 CD4T L1
ENSG00000213625 LEPROT -711502 sc-eQTL 4.88e-01 0.0619 0.0892 0.729 CD4T L1
ENSG00000116678 LEPR -711567 sc-eQTL 2.91e-01 0.102 0.0962 0.729 CD8T L1
ENSG00000158966 CACHD1 238956 sc-eQTL 7.37e-01 0.016 0.0475 0.729 CD8T L1
ENSG00000162434 JAK1 -358669 sc-eQTL 1.71e-01 -0.102 0.0745 0.729 CD8T L1
ENSG00000213625 LEPROT -711502 sc-eQTL 7.90e-01 0.0264 0.0991 0.729 CD8T L1
ENSG00000116678 LEPR -711567 sc-eQTL 6.11e-01 -0.0482 0.0945 0.73 DC L1
ENSG00000162433 AK4 -438464 sc-eQTL 9.75e-01 0.00245 0.0795 0.73 DC L1
ENSG00000162434 JAK1 -358669 sc-eQTL 1.03e-01 -0.108 0.0657 0.73 DC L1
ENSG00000162437 RAVER2 -36010 sc-eQTL 1.20e-01 0.131 0.0842 0.73 DC L1
ENSG00000213625 LEPROT -711502 sc-eQTL 2.70e-01 0.103 0.0935 0.73 DC L1
ENSG00000285079 AL513493.1 -994877 sc-eQTL 4.16e-01 -0.0411 0.0504 0.73 DC L1
ENSG00000116678 LEPR -711567 sc-eQTL 5.98e-01 -0.0495 0.0939 0.729 Mono L1
ENSG00000162433 AK4 -438464 sc-eQTL 9.84e-01 0.00174 0.086 0.729 Mono L1
ENSG00000162434 JAK1 -358669 sc-eQTL 5.29e-01 -0.0386 0.0612 0.729 Mono L1
ENSG00000213625 LEPROT -711502 sc-eQTL 7.98e-01 -0.0156 0.0607 0.729 Mono L1
ENSG00000116678 LEPR -711567 sc-eQTL 1.80e-01 -0.123 0.0913 0.727 NK L1
ENSG00000162434 JAK1 -358669 sc-eQTL 3.02e-01 -0.0448 0.0432 0.727 NK L1
ENSG00000213625 LEPROT -711502 sc-eQTL 1.89e-01 0.13 0.0984 0.727 NK L1
ENSG00000162434 JAK1 -358669 sc-eQTL 3.65e-01 -0.0576 0.0634 0.729 Other_T L1
ENSG00000162437 RAVER2 -36010 sc-eQTL 9.66e-01 0.00391 0.0923 0.729 Other_T L1
ENSG00000213625 LEPROT -711502 sc-eQTL 7.39e-01 -0.0333 0.0997 0.729 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -358669 sc-eQTL 4.42e-01 -0.079 0.102 0.722 B_Activated L2
ENSG00000213625 LEPROT -711502 sc-eQTL 4.45e-01 -0.0819 0.107 0.722 B_Activated L2
ENSG00000162434 JAK1 -358669 sc-eQTL 1.15e-01 -0.131 0.0829 0.73 B_Intermediate L2
ENSG00000213625 LEPROT -711502 sc-eQTL 9.17e-01 0.0102 0.0977 0.73 B_Intermediate L2
ENSG00000162434 JAK1 -358669 sc-eQTL 9.24e-02 -0.139 0.0823 0.728 B_Memory L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.24e-01 0.0341 0.0962 0.728 B_Memory L2
ENSG00000162434 JAK1 -358669 sc-eQTL 3.44e-01 -0.0711 0.0749 0.729 B_Naive1 L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.35e-01 -0.0332 0.0979 0.729 B_Naive1 L2
ENSG00000162434 JAK1 -358669 sc-eQTL 4.10e-01 0.0655 0.0793 0.727 B_Naive2 L2
ENSG00000213625 LEPROT -711502 sc-eQTL 8.48e-03 -0.25 0.0942 0.727 B_Naive2 L2
ENSG00000158966 CACHD1 238956 sc-eQTL 9.24e-01 0.00345 0.0363 0.723 CD4_CTL L2
ENSG00000162434 JAK1 -358669 sc-eQTL 6.29e-01 -0.0433 0.0895 0.723 CD4_CTL L2
ENSG00000213625 LEPROT -711502 sc-eQTL 2.57e-01 -0.117 0.103 0.723 CD4_CTL L2
ENSG00000158966 CACHD1 238956 sc-eQTL 7.67e-01 0.0162 0.0547 0.729 CD4_Naive L2
ENSG00000162434 JAK1 -358669 sc-eQTL 5.45e-01 0.0339 0.0558 0.729 CD4_Naive L2
ENSG00000213625 LEPROT -711502 sc-eQTL 2.44e-01 0.106 0.0903 0.729 CD4_Naive L2
ENSG00000158966 CACHD1 238956 sc-eQTL 5.72e-02 -0.147 0.077 0.729 CD4_TCM L2
ENSG00000162434 JAK1 -358669 sc-eQTL 4.86e-01 0.0443 0.0634 0.729 CD4_TCM L2
ENSG00000213625 LEPROT -711502 sc-eQTL 5.96e-01 0.0489 0.0921 0.729 CD4_TCM L2
ENSG00000158966 CACHD1 238956 sc-eQTL 5.06e-01 -0.0397 0.0595 0.729 CD4_TEM L2
ENSG00000162434 JAK1 -358669 sc-eQTL 3.59e-01 -0.0777 0.0846 0.729 CD4_TEM L2
ENSG00000213625 LEPROT -711502 sc-eQTL 3.14e-01 -0.101 0.1 0.729 CD4_TEM L2
ENSG00000116678 LEPR -711567 sc-eQTL 9.52e-01 0.00585 0.0962 0.729 CD8_CTL L2
ENSG00000158966 CACHD1 238956 sc-eQTL 1.27e-01 -0.0658 0.043 0.729 CD8_CTL L2
ENSG00000162434 JAK1 -358669 sc-eQTL 4.30e-01 -0.0638 0.0807 0.729 CD8_CTL L2
ENSG00000213625 LEPROT -711502 sc-eQTL 3.65e-01 -0.0895 0.0985 0.729 CD8_CTL L2
ENSG00000116678 LEPR -711567 sc-eQTL 2.82e-01 0.101 0.0939 0.729 CD8_Naive L2
ENSG00000158966 CACHD1 238956 sc-eQTL 9.90e-01 -0.000811 0.0652 0.729 CD8_Naive L2
ENSG00000162434 JAK1 -358669 sc-eQTL 4.70e-01 -0.0568 0.0784 0.729 CD8_Naive L2
ENSG00000213625 LEPROT -711502 sc-eQTL 6.28e-01 0.0467 0.0961 0.729 CD8_Naive L2
ENSG00000116678 LEPR -711567 sc-eQTL 9.81e-01 0.00221 0.095 0.725 CD8_TCM L2
ENSG00000158966 CACHD1 238956 sc-eQTL 6.91e-01 0.0204 0.0513 0.725 CD8_TCM L2
ENSG00000162434 JAK1 -358669 sc-eQTL 8.26e-01 -0.0181 0.0825 0.725 CD8_TCM L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.33e-01 0.0352 0.103 0.725 CD8_TCM L2
ENSG00000116678 LEPR -711567 sc-eQTL 5.39e-01 -0.0542 0.0881 0.721 CD8_TEM L2
ENSG00000158966 CACHD1 238956 sc-eQTL 6.64e-01 0.00918 0.0211 0.721 CD8_TEM L2
ENSG00000162434 JAK1 -358669 sc-eQTL 7.60e-01 -0.0305 0.0996 0.721 CD8_TEM L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.15e-01 -0.0376 0.103 0.721 CD8_TEM L2
ENSG00000162434 JAK1 -358669 sc-eQTL 7.93e-01 0.0223 0.0849 0.725 MAIT L2
ENSG00000162437 RAVER2 -36010 sc-eQTL 6.99e-01 0.0351 0.0905 0.725 MAIT L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.38e-01 0.0328 0.0978 0.725 MAIT L2
ENSG00000116678 LEPR -711567 sc-eQTL 2.75e-01 -0.101 0.0924 0.727 NK_CD56bright L2
ENSG00000162434 JAK1 -358669 sc-eQTL 4.59e-01 -0.047 0.0634 0.727 NK_CD56bright L2
ENSG00000213625 LEPROT -711502 sc-eQTL 1.91e-01 0.136 0.104 0.727 NK_CD56bright L2
ENSG00000116678 LEPR -711567 sc-eQTL 1.35e-01 -0.144 0.096 0.726 NK_CD56dim L2
ENSG00000162434 JAK1 -358669 sc-eQTL 5.11e-01 -0.0332 0.0504 0.726 NK_CD56dim L2
ENSG00000213625 LEPROT -711502 sc-eQTL 2.56e-01 0.116 0.102 0.726 NK_CD56dim L2
ENSG00000116678 LEPR -711567 sc-eQTL 4.61e-01 -0.0648 0.0877 0.733 NK_HLA L2
ENSG00000162434 JAK1 -358669 sc-eQTL 2.58e-01 -0.0773 0.0682 0.733 NK_HLA L2
ENSG00000213625 LEPROT -711502 sc-eQTL 4.56e-01 0.0791 0.106 0.733 NK_HLA L2
ENSG00000116678 LEPR -711567 sc-eQTL 7.35e-01 -0.0321 0.0949 0.726 NK_cytokine L2
ENSG00000162434 JAK1 -358669 sc-eQTL 3.36e-01 -0.0532 0.0551 0.726 NK_cytokine L2
ENSG00000213625 LEPROT -711502 sc-eQTL 8.10e-01 -0.0242 0.1 0.726 NK_cytokine L2
ENSG00000162434 JAK1 -358669 sc-eQTL 3.60e-01 -0.0767 0.0834 0.696 PB L2
ENSG00000213625 LEPROT -711502 sc-eQTL 5.61e-01 0.0683 0.117 0.696 PB L2
ENSG00000162434 JAK1 -358669 sc-eQTL 8.73e-01 0.0104 0.0648 0.726 Pro_T L2
ENSG00000162437 RAVER2 -36010 sc-eQTL 7.71e-01 0.025 0.0855 0.726 Pro_T L2
ENSG00000213625 LEPROT -711502 sc-eQTL 9.36e-01 0.00812 0.101 0.726 Pro_T L2
ENSG00000158966 CACHD1 238956 sc-eQTL 5.81e-01 -0.041 0.0742 0.729 Treg L2
ENSG00000162434 JAK1 -358669 sc-eQTL 8.88e-01 0.0112 0.0791 0.729 Treg L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.00e-01 -0.0395 0.103 0.729 Treg L2
ENSG00000116678 LEPR -711567 sc-eQTL 8.03e-01 -0.0243 0.0974 0.724 cDC L2
ENSG00000162433 AK4 -438464 sc-eQTL 9.32e-01 -0.00733 0.0861 0.724 cDC L2
ENSG00000162434 JAK1 -358669 sc-eQTL 1.69e-02 -0.191 0.0791 0.724 cDC L2
ENSG00000162437 RAVER2 -36010 sc-eQTL 2.33e-01 0.105 0.0879 0.724 cDC L2
ENSG00000213625 LEPROT -711502 sc-eQTL 7.65e-01 0.0293 0.0979 0.724 cDC L2
ENSG00000285079 AL513493.1 -994877 sc-eQTL 2.31e-01 0.0422 0.035 0.724 cDC L2
ENSG00000116678 LEPR -711567 sc-eQTL 8.60e-01 0.0168 0.0951 0.729 cMono_IL1B L2
ENSG00000162433 AK4 -438464 sc-eQTL 7.29e-01 -0.0303 0.0875 0.729 cMono_IL1B L2
ENSG00000162434 JAK1 -358669 sc-eQTL 6.19e-01 -0.0396 0.0796 0.729 cMono_IL1B L2
ENSG00000213625 LEPROT -711502 sc-eQTL 9.09e-01 -0.00734 0.0643 0.729 cMono_IL1B L2
ENSG00000116678 LEPR -711567 sc-eQTL 8.30e-01 -0.0201 0.0935 0.729 cMono_S100A L2
ENSG00000162433 AK4 -438464 sc-eQTL 9.63e-01 0.00406 0.0887 0.729 cMono_S100A L2
ENSG00000162434 JAK1 -358669 sc-eQTL 7.23e-01 0.0291 0.0818 0.729 cMono_S100A L2
ENSG00000213625 LEPROT -711502 sc-eQTL 3.02e-01 -0.079 0.0764 0.729 cMono_S100A L2
ENSG00000162434 JAK1 -358669 sc-eQTL 2.36e-01 -0.141 0.118 0.739 gdT L2
ENSG00000162437 RAVER2 -36010 sc-eQTL 2.83e-01 -0.112 0.104 0.739 gdT L2
ENSG00000213625 LEPROT -711502 sc-eQTL 4.77e-01 -0.0892 0.125 0.739 gdT L2
ENSG00000116678 LEPR -711567 sc-eQTL 6.09e-01 0.0472 0.092 0.722 intMono L2
ENSG00000162433 AK4 -438464 sc-eQTL 3.50e-02 0.182 0.0858 0.722 intMono L2
ENSG00000162434 JAK1 -358669 sc-eQTL 2.81e-01 -0.0865 0.08 0.722 intMono L2
ENSG00000213625 LEPROT -711502 sc-eQTL 6.47e-01 -0.0354 0.0773 0.722 intMono L2
ENSG00000116678 LEPR -711567 sc-eQTL 8.32e-01 -0.02 0.0942 0.731 ncMono L2
ENSG00000162433 AK4 -438464 sc-eQTL 3.35e-01 -0.0811 0.0838 0.731 ncMono L2
ENSG00000162434 JAK1 -358669 sc-eQTL 7.00e-02 -0.123 0.0674 0.731 ncMono L2
ENSG00000213625 LEPROT -711502 sc-eQTL 2.76e-01 -0.105 0.0962 0.731 ncMono L2
ENSG00000116678 LEPR -711567 sc-eQTL 8.53e-01 -0.0189 0.102 0.729 pDC L2
ENSG00000162433 AK4 -438464 sc-eQTL 9.36e-01 0.00536 0.0663 0.729 pDC L2
ENSG00000162434 JAK1 -358669 sc-eQTL 5.35e-01 -0.055 0.0884 0.729 pDC L2
ENSG00000162437 RAVER2 -36010 sc-eQTL 1.75e-01 0.135 0.0992 0.729 pDC L2
ENSG00000213625 LEPROT -711502 sc-eQTL 4.23e-01 0.0881 0.11 0.729 pDC L2
ENSG00000285079 AL513493.1 -994877 sc-eQTL 5.94e-01 -0.0443 0.0829 0.729 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -358669 sc-eQTL 7.72e-02 -0.132 0.0743 0.729 B_Memory LOneK1K
ENSG00000213625 LEPROT -711502 sc-eQTL 6.81e-01 0.0396 0.0961 0.729 B_Memory LOneK1K
ENSG00000162434 JAK1 -358669 sc-eQTL 5.90e-01 -0.0392 0.0726 0.729 B_Naive LOneK1K
ENSG00000213625 LEPROT -711502 sc-eQTL 7.91e-02 -0.161 0.0912 0.729 B_Naive LOneK1K
ENSG00000116678 LEPR -711567 sc-eQTL 8.47e-01 -0.0179 0.093 0.729 CD14_Mono LOneK1K
ENSG00000162433 AK4 -438464 sc-eQTL 7.81e-01 -0.0247 0.089 0.729 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -358669 sc-eQTL 8.28e-01 0.0162 0.0744 0.729 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -711502 sc-eQTL 6.58e-01 -0.0276 0.0624 0.729 CD14_Mono LOneK1K
ENSG00000116678 LEPR -711567 sc-eQTL 5.85e-01 -0.051 0.0934 0.726 CD16_Mono LOneK1K
ENSG00000162433 AK4 -438464 sc-eQTL 4.92e-01 0.0582 0.0845 0.726 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -358669 sc-eQTL 4.92e-02 -0.112 0.0564 0.726 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -711502 sc-eQTL 1.88e-01 -0.104 0.079 0.726 CD16_Mono LOneK1K
ENSG00000116678 LEPR -711567 sc-eQTL 1.98e-01 -0.121 0.0939 0.726 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -358669 sc-eQTL 2.06e-01 -0.0558 0.044 0.726 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -711502 sc-eQTL 5.45e-01 0.0593 0.0977 0.726 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116678 LEPR -711567 eQTL 0.0364 0.0535 0.0255 0.0 0.0 0.258
ENSG00000162433 AK4 -438464 eQTL 0.0227 -0.0562 0.0246 0.0 0.0 0.258
ENSG00000162437 RAVER2 -36010 eQTL 0.00803 -0.0655 0.0246 0.0 0.0 0.258

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 AK4 -438464 8.85e-07 5.67e-07 1.45e-07 3.81e-07 1.1e-07 2.16e-07 5.76e-07 1.31e-07 4.26e-07 2.37e-07 6.56e-07 3.61e-07 8.6e-07 1.49e-07 1.9e-07 2.23e-07 3.24e-07 4.11e-07 2.42e-07 1.63e-07 1.97e-07 3.87e-07 3.69e-07 1.8e-07 8.99e-07 2.39e-07 2.62e-07 2.71e-07 3.99e-07 6.35e-07 3.32e-07 5.25e-08 4.35e-08 1.73e-07 3.4e-07 1.44e-07 1.01e-07 1.09e-07 7.45e-08 2.59e-08 8.48e-08 6.15e-07 4.36e-08 1.21e-08 1.33e-07 1.25e-08 1.24e-07 1.26e-08 5.43e-08
ENSG00000162437 RAVER2 -36010 1.09e-05 1.24e-05 2.36e-06 6.97e-06 2.32e-06 5.6e-06 1.44e-05 2.12e-06 1.07e-05 5.9e-06 1.45e-05 6.31e-06 2e-05 4.25e-06 3.67e-06 6.93e-06 6.55e-06 9.78e-06 3.62e-06 3.12e-06 6.81e-06 1.12e-05 1.07e-05 3.81e-06 2.06e-05 4.31e-06 6.24e-06 4.99e-06 1.33e-05 1.36e-05 7.47e-06 9.92e-07 1.23e-06 3.69e-06 5.42e-06 3.09e-06 1.77e-06 2.15e-06 2.46e-06 1.54e-06 1.14e-06 1.51e-05 1.61e-06 2.81e-07 9.39e-07 1.76e-06 1.84e-06 6.86e-07 4.9e-07