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Genes within 1Mb (chr1:64701854:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -365900 sc-eQTL 5.30e-01 0.0352 0.056 0.594 B L1
ENSG00000213625 LEPROT -718733 sc-eQTL 6.33e-01 0.0342 0.0715 0.594 B L1
ENSG00000158966 CACHD1 231725 sc-eQTL 7.31e-01 0.018 0.0522 0.594 CD4T L1
ENSG00000162434 JAK1 -365900 sc-eQTL 8.44e-01 0.0108 0.0547 0.594 CD4T L1
ENSG00000213625 LEPROT -718733 sc-eQTL 1.03e-01 0.139 0.085 0.594 CD4T L1
ENSG00000116678 LEPR -718798 sc-eQTL 5.09e-01 0.0614 0.0928 0.594 CD8T L1
ENSG00000158966 CACHD1 231725 sc-eQTL 3.52e-01 0.0426 0.0456 0.594 CD8T L1
ENSG00000162434 JAK1 -365900 sc-eQTL 2.33e-01 -0.0859 0.0718 0.594 CD8T L1
ENSG00000213625 LEPROT -718733 sc-eQTL 2.57e-01 0.108 0.0952 0.594 CD8T L1
ENSG00000116678 LEPR -718798 sc-eQTL 8.41e-01 0.0178 0.0886 0.59 DC L1
ENSG00000162433 AK4 -445695 sc-eQTL 6.99e-01 -0.0288 0.0744 0.59 DC L1
ENSG00000162434 JAK1 -365900 sc-eQTL 1.39e-02 -0.151 0.061 0.59 DC L1
ENSG00000162437 RAVER2 -43241 sc-eQTL 4.75e-01 0.0568 0.0793 0.59 DC L1
ENSG00000213625 LEPROT -718733 sc-eQTL 2.51e-01 0.101 0.0876 0.59 DC L1
ENSG00000116678 LEPR -718798 sc-eQTL 3.01e-01 -0.0933 0.0899 0.594 Mono L1
ENSG00000162433 AK4 -445695 sc-eQTL 9.26e-01 -0.00768 0.0825 0.594 Mono L1
ENSG00000162434 JAK1 -365900 sc-eQTL 4.24e-01 0.047 0.0587 0.594 Mono L1
ENSG00000213625 LEPROT -718733 sc-eQTL 8.45e-01 -0.0114 0.0583 0.594 Mono L1
ENSG00000116678 LEPR -718798 sc-eQTL 7.16e-01 -0.0324 0.0889 0.594 NK L1
ENSG00000162434 JAK1 -365900 sc-eQTL 3.51e-01 -0.0392 0.0419 0.594 NK L1
ENSG00000213625 LEPROT -718733 sc-eQTL 4.44e-01 0.0734 0.0957 0.594 NK L1
ENSG00000162434 JAK1 -365900 sc-eQTL 2.95e-01 0.0631 0.0601 0.594 Other_T L1
ENSG00000162437 RAVER2 -43241 sc-eQTL 7.91e-01 0.0233 0.0875 0.594 Other_T L1
ENSG00000213625 LEPROT -718733 sc-eQTL 8.48e-01 0.0182 0.0946 0.594 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -365900 sc-eQTL 6.64e-02 -0.18 0.0974 0.594 B_Activated L2
ENSG00000213625 LEPROT -718733 sc-eQTL 4.29e-02 -0.207 0.102 0.594 B_Activated L2
ENSG00000162434 JAK1 -365900 sc-eQTL 7.87e-01 0.0214 0.0792 0.594 B_Intermediate L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.93e-01 0.121 0.0925 0.594 B_Intermediate L2
ENSG00000162434 JAK1 -365900 sc-eQTL 6.41e-01 -0.0367 0.0785 0.595 B_Memory L2
ENSG00000213625 LEPROT -718733 sc-eQTL 8.52e-01 -0.017 0.0912 0.595 B_Memory L2
ENSG00000162434 JAK1 -365900 sc-eQTL 9.55e-01 -0.0041 0.0722 0.594 B_Naive1 L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.86e-01 0.0514 0.0942 0.594 B_Naive1 L2
ENSG00000162434 JAK1 -365900 sc-eQTL 2.45e-01 0.0867 0.0744 0.594 B_Naive2 L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.71e-01 -0.123 0.0896 0.594 B_Naive2 L2
ENSG00000158966 CACHD1 231725 sc-eQTL 2.90e-01 0.0367 0.0346 0.584 CD4_CTL L2
ENSG00000162434 JAK1 -365900 sc-eQTL 3.43e-01 0.081 0.0853 0.584 CD4_CTL L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.53e-01 -0.14 0.0977 0.584 CD4_CTL L2
ENSG00000158966 CACHD1 231725 sc-eQTL 7.56e-01 0.0165 0.0528 0.594 CD4_Naive L2
ENSG00000162434 JAK1 -365900 sc-eQTL 7.84e-01 -0.0148 0.0539 0.594 CD4_Naive L2
ENSG00000213625 LEPROT -718733 sc-eQTL 7.90e-03 0.231 0.086 0.594 CD4_Naive L2
ENSG00000158966 CACHD1 231725 sc-eQTL 1.41e-02 -0.182 0.0734 0.594 CD4_TCM L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.05e-01 0.0407 0.0609 0.594 CD4_TCM L2
ENSG00000213625 LEPROT -718733 sc-eQTL 8.88e-01 -0.0125 0.0884 0.594 CD4_TCM L2
ENSG00000158966 CACHD1 231725 sc-eQTL 7.51e-01 -0.0181 0.0567 0.594 CD4_TEM L2
ENSG00000162434 JAK1 -365900 sc-eQTL 6.80e-01 -0.0333 0.0806 0.594 CD4_TEM L2
ENSG00000213625 LEPROT -718733 sc-eQTL 9.34e-01 -0.00793 0.0958 0.594 CD4_TEM L2
ENSG00000116678 LEPR -718798 sc-eQTL 4.78e-01 0.0649 0.0913 0.594 CD8_CTL L2
ENSG00000158966 CACHD1 231725 sc-eQTL 2.36e-01 -0.0487 0.041 0.594 CD8_CTL L2
ENSG00000162434 JAK1 -365900 sc-eQTL 8.76e-01 -0.012 0.0768 0.594 CD8_CTL L2
ENSG00000213625 LEPROT -718733 sc-eQTL 6.65e-01 0.0407 0.0938 0.594 CD8_CTL L2
ENSG00000116678 LEPR -718798 sc-eQTL 7.89e-01 -0.0242 0.0903 0.594 CD8_Naive L2
ENSG00000158966 CACHD1 231725 sc-eQTL 5.64e-01 0.0361 0.0625 0.594 CD8_Naive L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.05e-01 -0.0502 0.0752 0.594 CD8_Naive L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.43e-01 0.135 0.0918 0.594 CD8_Naive L2
ENSG00000116678 LEPR -718798 sc-eQTL 9.91e-01 -0.00104 0.0899 0.59 CD8_TCM L2
ENSG00000158966 CACHD1 231725 sc-eQTL 4.95e-01 0.0332 0.0485 0.59 CD8_TCM L2
ENSG00000162434 JAK1 -365900 sc-eQTL 6.35e-01 -0.0371 0.078 0.59 CD8_TCM L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.85e-01 0.0533 0.0974 0.59 CD8_TCM L2
ENSG00000116678 LEPR -718798 sc-eQTL 2.37e-01 -0.0981 0.0827 0.589 CD8_TEM L2
ENSG00000158966 CACHD1 231725 sc-eQTL 2.06e-02 -0.0457 0.0196 0.589 CD8_TEM L2
ENSG00000162434 JAK1 -365900 sc-eQTL 4.24e-01 -0.0751 0.0938 0.589 CD8_TEM L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.50e-01 -0.0579 0.0967 0.589 CD8_TEM L2
ENSG00000162434 JAK1 -365900 sc-eQTL 1.25e-01 0.124 0.0803 0.593 MAIT L2
ENSG00000162437 RAVER2 -43241 sc-eQTL 2.43e-01 0.1 0.0858 0.593 MAIT L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.44e-01 0.0564 0.0929 0.593 MAIT L2
ENSG00000116678 LEPR -718798 sc-eQTL 4.78e-01 -0.0621 0.0873 0.593 NK_CD56bright L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.50e-01 -0.0358 0.0598 0.593 NK_CD56bright L2
ENSG00000213625 LEPROT -718733 sc-eQTL 7.75e-01 -0.0281 0.0983 0.593 NK_CD56bright L2
ENSG00000116678 LEPR -718798 sc-eQTL 4.27e-01 -0.075 0.0942 0.593 NK_CD56dim L2
ENSG00000162434 JAK1 -365900 sc-eQTL 8.24e-01 -0.011 0.0493 0.593 NK_CD56dim L2
ENSG00000213625 LEPROT -718733 sc-eQTL 3.29e-01 0.0974 0.0995 0.593 NK_CD56dim L2
ENSG00000116678 LEPR -718798 sc-eQTL 6.07e-01 -0.0422 0.0819 0.603 NK_HLA L2
ENSG00000162434 JAK1 -365900 sc-eQTL 1.27e-01 -0.0971 0.0634 0.603 NK_HLA L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.29e-01 0.15 0.0984 0.603 NK_HLA L2
ENSG00000116678 LEPR -718798 sc-eQTL 9.97e-01 -0.000301 0.0902 0.593 NK_cytokine L2
ENSG00000162434 JAK1 -365900 sc-eQTL 2.49e-01 -0.0605 0.0523 0.593 NK_cytokine L2
ENSG00000213625 LEPROT -718733 sc-eQTL 8.03e-01 -0.0238 0.0954 0.593 NK_cytokine L2
ENSG00000162434 JAK1 -365900 sc-eQTL 7.20e-01 -0.0307 0.0854 0.574 PB L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.67e-01 0.0686 0.119 0.574 PB L2
ENSG00000162434 JAK1 -365900 sc-eQTL 4.96e-01 0.0412 0.0604 0.593 Pro_T L2
ENSG00000162437 RAVER2 -43241 sc-eQTL 9.32e-01 0.00679 0.0798 0.593 Pro_T L2
ENSG00000213625 LEPROT -718733 sc-eQTL 3.09e-01 0.0958 0.0939 0.593 Pro_T L2
ENSG00000158966 CACHD1 231725 sc-eQTL 5.24e-01 -0.0456 0.0714 0.594 Treg L2
ENSG00000162434 JAK1 -365900 sc-eQTL 8.56e-01 0.0138 0.0761 0.594 Treg L2
ENSG00000213625 LEPROT -718733 sc-eQTL 6.84e-01 -0.0402 0.0987 0.594 Treg L2
ENSG00000116678 LEPR -718798 sc-eQTL 4.91e-01 0.0641 0.0928 0.585 cDC L2
ENSG00000162433 AK4 -445695 sc-eQTL 5.45e-01 -0.0498 0.082 0.585 cDC L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.78e-02 -0.145 0.0759 0.585 cDC L2
ENSG00000162437 RAVER2 -43241 sc-eQTL 1.60e-01 0.118 0.0838 0.585 cDC L2
ENSG00000213625 LEPROT -718733 sc-eQTL 6.64e-01 0.0407 0.0934 0.585 cDC L2
ENSG00000116678 LEPR -718798 sc-eQTL 7.66e-01 -0.0268 0.09 0.594 cMono_IL1B L2
ENSG00000162433 AK4 -445695 sc-eQTL 3.13e-01 -0.0836 0.0826 0.594 cMono_IL1B L2
ENSG00000162434 JAK1 -365900 sc-eQTL 1.67e-01 0.104 0.075 0.594 cMono_IL1B L2
ENSG00000213625 LEPROT -718733 sc-eQTL 4.92e-01 0.0419 0.0608 0.594 cMono_IL1B L2
ENSG00000116678 LEPR -718798 sc-eQTL 1.16e-01 -0.139 0.0881 0.594 cMono_S100A L2
ENSG00000162433 AK4 -445695 sc-eQTL 6.12e-01 0.0427 0.084 0.594 cMono_S100A L2
ENSG00000162434 JAK1 -365900 sc-eQTL 6.09e-01 0.0397 0.0775 0.594 cMono_S100A L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.49e-01 -0.0435 0.0725 0.594 cMono_S100A L2
ENSG00000162434 JAK1 -365900 sc-eQTL 2.15e-01 0.132 0.106 0.603 gdT L2
ENSG00000162437 RAVER2 -43241 sc-eQTL 9.19e-01 0.00961 0.0939 0.603 gdT L2
ENSG00000213625 LEPROT -718733 sc-eQTL 4.81e-01 -0.0795 0.112 0.603 gdT L2
ENSG00000116678 LEPR -718798 sc-eQTL 9.09e-01 0.0101 0.0878 0.593 intMono L2
ENSG00000162433 AK4 -445695 sc-eQTL 4.70e-02 0.164 0.0819 0.593 intMono L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.05e-01 -0.051 0.0764 0.593 intMono L2
ENSG00000213625 LEPROT -718733 sc-eQTL 1.52e-01 -0.105 0.0733 0.593 intMono L2
ENSG00000116678 LEPR -718798 sc-eQTL 4.39e-01 -0.0679 0.0877 0.597 ncMono L2
ENSG00000162433 AK4 -445695 sc-eQTL 9.81e-01 0.00183 0.0783 0.597 ncMono L2
ENSG00000162434 JAK1 -365900 sc-eQTL 5.71e-01 -0.0359 0.0633 0.597 ncMono L2
ENSG00000213625 LEPROT -718733 sc-eQTL 5.23e-01 -0.0574 0.0898 0.597 ncMono L2
ENSG00000116678 LEPR -718798 sc-eQTL 6.01e-01 -0.0482 0.092 0.596 pDC L2
ENSG00000162433 AK4 -445695 sc-eQTL 3.89e-01 -0.0518 0.0599 0.596 pDC L2
ENSG00000162434 JAK1 -365900 sc-eQTL 3.54e-01 -0.0742 0.0799 0.596 pDC L2
ENSG00000162437 RAVER2 -43241 sc-eQTL 3.63e-01 -0.0822 0.0901 0.596 pDC L2
ENSG00000213625 LEPROT -718733 sc-eQTL 3.71e-01 0.0891 0.0992 0.596 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -365900 sc-eQTL 8.10e-01 0.017 0.0709 0.594 B_Memory LOneK1K
ENSG00000213625 LEPROT -718733 sc-eQTL 6.03e-01 0.0474 0.091 0.594 B_Memory LOneK1K
ENSG00000162434 JAK1 -365900 sc-eQTL 9.16e-01 0.00737 0.0696 0.594 B_Naive LOneK1K
ENSG00000213625 LEPROT -718733 sc-eQTL 7.37e-01 -0.0296 0.088 0.594 B_Naive LOneK1K
ENSG00000116678 LEPR -718798 sc-eQTL 3.66e-01 -0.0802 0.0885 0.594 CD14_Mono LOneK1K
ENSG00000162433 AK4 -445695 sc-eQTL 5.31e-01 -0.0531 0.0848 0.594 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -365900 sc-eQTL 1.31e-01 0.107 0.0706 0.594 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -718733 sc-eQTL 7.40e-01 0.0198 0.0595 0.594 CD14_Mono LOneK1K
ENSG00000116678 LEPR -718798 sc-eQTL 5.41e-01 -0.0541 0.0885 0.595 CD16_Mono LOneK1K
ENSG00000162433 AK4 -445695 sc-eQTL 1.67e-01 0.111 0.0798 0.595 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -365900 sc-eQTL 4.14e-01 -0.0441 0.0539 0.595 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -718733 sc-eQTL 1.73e-01 -0.102 0.0749 0.595 CD16_Mono LOneK1K
ENSG00000116678 LEPR -718798 sc-eQTL 7.97e-01 -0.0238 0.0925 0.593 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -365900 sc-eQTL 3.04e-01 -0.0445 0.0432 0.593 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -718733 sc-eQTL 5.86e-01 0.0522 0.0958 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116678 LEPR -718798 eQTL 0.0138 0.0582 0.0236 0.0 0.0 0.415
ENSG00000162433 AK4 -445695 eQTL 0.0108 -0.0581 0.0227 0.0 0.0 0.415
ENSG00000162434 JAK1 -264695 eQTL 0.0421 -0.0308 0.0152 0.0 0.0 0.415
ENSG00000162437 RAVER2 -43241 eQTL 0.0005 -0.0794 0.0227 0.0 0.0 0.415
ENSG00000226891 LINC01359 -300635 eQTL 0.0177 -0.069 0.029 0.0 0.0 0.415
ENSG00000231485 AL357078.1 -365883 eQTL 0.0677 0.0741 0.0405 0.0011 0.0 0.415

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 AK4 -445695 5.59e-07 4.63e-07 1.05e-07 3.58e-07 1.1e-07 1.71e-07 4.68e-07 9.07e-08 2.75e-07 2.01e-07 3.97e-07 3.27e-07 5.39e-07 1.17e-07 1.45e-07 1.75e-07 2.07e-07 2.96e-07 1.81e-07 1.24e-07 1.91e-07 2.76e-07 2.77e-07 1.25e-07 4.88e-07 2.07e-07 1.97e-07 2.01e-07 2.66e-07 4.3e-07 1.93e-07 6.84e-08 4.74e-08 1.19e-07 1.97e-07 7.56e-08 8.28e-08 8.04e-08 6.72e-08 5.32e-08 9.77e-08 3.73e-07 4.53e-08 1.06e-08 1.1e-07 1.81e-08 1.04e-07 1.79e-08 4.71e-08
ENSG00000162434 JAK1 -264695 1.24e-06 1.01e-06 3.49e-07 1e-06 2.98e-07 5.4e-07 1.59e-06 3.5e-07 1.35e-06 4.44e-07 1.57e-06 7.04e-07 2.01e-06 2.74e-07 5.72e-07 8.12e-07 8.9e-07 5.82e-07 8.26e-07 6.82e-07 5.8e-07 1.28e-06 8.96e-07 6.57e-07 2.23e-06 3.79e-07 8.22e-07 7.08e-07 1.29e-06 1.32e-06 6.02e-07 2.1e-07 1.88e-07 6.83e-07 5.32e-07 4.5e-07 6.1e-07 2.26e-07 4.97e-07 2.93e-07 2.88e-07 1.46e-06 1.39e-07 8.1e-08 1.73e-07 1.22e-07 2.21e-07 3.75e-08 1.12e-07
ENSG00000162437 RAVER2 -43241 9.21e-06 1.22e-05 1.76e-06 6.69e-06 2.36e-06 5.12e-06 1.2e-05 2.16e-06 1.03e-05 5.42e-06 1.39e-05 6.09e-06 1.79e-05 4.08e-06 3.51e-06 6.69e-06 5.55e-06 7.87e-06 3.04e-06 2.84e-06 5.97e-06 1.04e-05 9.75e-06 3.39e-06 1.81e-05 4.56e-06 5.83e-06 4.8e-06 1.23e-05 1.1e-05 6.63e-06 1.01e-06 1.17e-06 3.52e-06 5.03e-06 2.74e-06 1.83e-06 1.95e-06 2.11e-06 1.03e-06 9.63e-07 1.29e-05 1.39e-06 1.76e-07 7.98e-07 1.67e-06 1.82e-06 8.34e-07 4.77e-07
ENSG00000226891 LINC01359 -300635 1.22e-06 9.44e-07 3.08e-07 5.24e-07 1.87e-07 4.39e-07 1.1e-06 2.98e-07 1.14e-06 3.85e-07 1.32e-06 6.02e-07 1.56e-06 2.8e-07 4.53e-07 6.22e-07 7.74e-07 5.33e-07 5.31e-07 5.33e-07 3.6e-07 9.46e-07 7.08e-07 5.1e-07 1.86e-06 2.44e-07 6.3e-07 5.61e-07 9.15e-07 1.11e-06 4.9e-07 1.55e-07 2.34e-07 3.91e-07 3.84e-07 3.71e-07 4.52e-07 1.46e-07 3.18e-07 8.82e-08 2.78e-07 1.36e-06 6.13e-08 4.2e-08 1.72e-07 7.7e-08 2.09e-07 8.93e-08 9.32e-08