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Genes within 1Mb (chr1:64697151:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -370603 sc-eQTL 5.08e-01 -0.0348 0.0524 0.534 B L1
ENSG00000213625 LEPROT -723436 sc-eQTL 5.59e-01 -0.0392 0.067 0.534 B L1
ENSG00000158966 CACHD1 227022 sc-eQTL 4.53e-01 0.0372 0.0494 0.534 CD4T L1
ENSG00000162434 JAK1 -370603 sc-eQTL 6.58e-01 0.023 0.0519 0.534 CD4T L1
ENSG00000213625 LEPROT -723436 sc-eQTL 2.05e-01 0.103 0.0808 0.534 CD4T L1
ENSG00000116678 LEPR -723501 sc-eQTL 5.17e-01 -0.056 0.0862 0.534 CD8T L1
ENSG00000158966 CACHD1 227022 sc-eQTL 3.30e-01 0.0414 0.0424 0.534 CD8T L1
ENSG00000162434 JAK1 -370603 sc-eQTL 7.48e-01 -0.0215 0.0669 0.534 CD8T L1
ENSG00000213625 LEPROT -723436 sc-eQTL 2.96e-01 0.0926 0.0884 0.534 CD8T L1
ENSG00000116678 LEPR -723501 sc-eQTL 3.94e-01 0.0736 0.0861 0.527 DC L1
ENSG00000162433 AK4 -450398 sc-eQTL 4.71e-02 -0.144 0.0718 0.527 DC L1
ENSG00000162434 JAK1 -370603 sc-eQTL 1.22e-01 -0.0931 0.06 0.527 DC L1
ENSG00000162437 RAVER2 -47944 sc-eQTL 4.99e-01 0.0524 0.0772 0.527 DC L1
ENSG00000213625 LEPROT -723436 sc-eQTL 8.43e-01 0.0169 0.0856 0.527 DC L1
ENSG00000116678 LEPR -723501 sc-eQTL 9.06e-01 -0.0102 0.086 0.534 Mono L1
ENSG00000162433 AK4 -450398 sc-eQTL 2.00e-01 -0.101 0.0784 0.534 Mono L1
ENSG00000162434 JAK1 -370603 sc-eQTL 4.02e-01 0.047 0.056 0.534 Mono L1
ENSG00000213625 LEPROT -723436 sc-eQTL 5.39e-01 0.0342 0.0555 0.534 Mono L1
ENSG00000116678 LEPR -723501 sc-eQTL 3.44e-01 -0.0793 0.0836 0.532 NK L1
ENSG00000162434 JAK1 -370603 sc-eQTL 9.43e-01 -0.00283 0.0396 0.532 NK L1
ENSG00000213625 LEPROT -723436 sc-eQTL 2.56e-01 -0.102 0.09 0.532 NK L1
ENSG00000162434 JAK1 -370603 sc-eQTL 7.12e-01 0.0213 0.0576 0.534 Other_T L1
ENSG00000162437 RAVER2 -47944 sc-eQTL 4.50e-01 -0.0633 0.0837 0.534 Other_T L1
ENSG00000213625 LEPROT -723436 sc-eQTL 8.35e-01 0.0188 0.0905 0.534 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -370603 sc-eQTL 9.72e-01 0.00332 0.0928 0.528 B_Activated L2
ENSG00000213625 LEPROT -723436 sc-eQTL 9.13e-03 -0.251 0.0952 0.528 B_Activated L2
ENSG00000162434 JAK1 -370603 sc-eQTL 3.90e-01 -0.0644 0.0747 0.534 B_Intermediate L2
ENSG00000213625 LEPROT -723436 sc-eQTL 6.46e-01 -0.0403 0.0877 0.534 B_Intermediate L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.97e-01 0.00032 0.0757 0.534 B_Memory L2
ENSG00000213625 LEPROT -723436 sc-eQTL 9.01e-01 0.011 0.088 0.534 B_Memory L2
ENSG00000162434 JAK1 -370603 sc-eQTL 2.34e-01 -0.0805 0.0674 0.534 B_Naive1 L2
ENSG00000213625 LEPROT -723436 sc-eQTL 1.44e-01 -0.129 0.0877 0.534 B_Naive1 L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.03e-01 -0.00866 0.0707 0.534 B_Naive2 L2
ENSG00000213625 LEPROT -723436 sc-eQTL 7.55e-01 -0.0266 0.0852 0.534 B_Naive2 L2
ENSG00000158966 CACHD1 227022 sc-eQTL 2.36e-01 0.0394 0.0331 0.523 CD4_CTL L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.05e-01 0.0547 0.0819 0.523 CD4_CTL L2
ENSG00000213625 LEPROT -723436 sc-eQTL 7.15e-01 -0.0345 0.0942 0.523 CD4_CTL L2
ENSG00000158966 CACHD1 227022 sc-eQTL 5.25e-01 0.0317 0.0499 0.534 CD4_Naive L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.00e-01 -0.00642 0.0509 0.534 CD4_Naive L2
ENSG00000213625 LEPROT -723436 sc-eQTL 1.00e-01 0.135 0.0821 0.534 CD4_Naive L2
ENSG00000158966 CACHD1 227022 sc-eQTL 2.55e-01 -0.08 0.07 0.534 CD4_TCM L2
ENSG00000162434 JAK1 -370603 sc-eQTL 2.51e-01 0.066 0.0573 0.534 CD4_TCM L2
ENSG00000213625 LEPROT -723436 sc-eQTL 1.40e-01 0.123 0.0829 0.534 CD4_TCM L2
ENSG00000158966 CACHD1 227022 sc-eQTL 3.62e-02 0.112 0.0532 0.534 CD4_TEM L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.33e-01 -0.00644 0.0765 0.534 CD4_TEM L2
ENSG00000213625 LEPROT -723436 sc-eQTL 4.94e-01 -0.0621 0.0907 0.534 CD4_TEM L2
ENSG00000116678 LEPR -723501 sc-eQTL 9.72e-01 0.00301 0.0846 0.534 CD8_CTL L2
ENSG00000158966 CACHD1 227022 sc-eQTL 2.04e-01 -0.0483 0.0379 0.534 CD8_CTL L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.26e-01 -0.0451 0.071 0.534 CD8_CTL L2
ENSG00000213625 LEPROT -723436 sc-eQTL 5.49e-01 0.052 0.0867 0.534 CD8_CTL L2
ENSG00000116678 LEPR -723501 sc-eQTL 1.42e-01 -0.126 0.0855 0.534 CD8_Naive L2
ENSG00000158966 CACHD1 227022 sc-eQTL 7.19e-01 0.0214 0.0595 0.534 CD8_Naive L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.17e-01 -0.0465 0.0715 0.534 CD8_Naive L2
ENSG00000213625 LEPROT -723436 sc-eQTL 1.16e-01 0.138 0.0872 0.534 CD8_Naive L2
ENSG00000116678 LEPR -723501 sc-eQTL 8.26e-01 -0.0193 0.0876 0.53 CD8_TCM L2
ENSG00000158966 CACHD1 227022 sc-eQTL 8.84e-01 0.00694 0.0473 0.53 CD8_TCM L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.07e-01 0.0505 0.076 0.53 CD8_TCM L2
ENSG00000213625 LEPROT -723436 sc-eQTL 9.34e-01 -0.00784 0.095 0.53 CD8_TCM L2
ENSG00000116678 LEPR -723501 sc-eQTL 3.51e-01 -0.0733 0.0784 0.539 CD8_TEM L2
ENSG00000158966 CACHD1 227022 sc-eQTL 9.87e-02 -0.031 0.0187 0.539 CD8_TEM L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.66e-01 -0.0511 0.0888 0.539 CD8_TEM L2
ENSG00000213625 LEPROT -723436 sc-eQTL 6.77e-01 0.0381 0.0915 0.539 CD8_TEM L2
ENSG00000162434 JAK1 -370603 sc-eQTL 2.10e-01 0.0982 0.0782 0.532 MAIT L2
ENSG00000162437 RAVER2 -47944 sc-eQTL 4.28e-01 0.0663 0.0835 0.532 MAIT L2
ENSG00000213625 LEPROT -723436 sc-eQTL 3.43e-01 0.0857 0.0902 0.532 MAIT L2
ENSG00000116678 LEPR -723501 sc-eQTL 6.46e-01 -0.0379 0.0824 0.531 NK_CD56bright L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.34e-01 0.00471 0.0564 0.531 NK_CD56bright L2
ENSG00000213625 LEPROT -723436 sc-eQTL 6.15e-01 -0.0467 0.0926 0.531 NK_CD56bright L2
ENSG00000116678 LEPR -723501 sc-eQTL 1.29e-01 -0.135 0.0888 0.532 NK_CD56dim L2
ENSG00000162434 JAK1 -370603 sc-eQTL 3.97e-01 0.0395 0.0465 0.532 NK_CD56dim L2
ENSG00000213625 LEPROT -723436 sc-eQTL 2.03e-01 -0.12 0.094 0.532 NK_CD56dim L2
ENSG00000116678 LEPR -723501 sc-eQTL 9.90e-01 0.000932 0.0779 0.539 NK_HLA L2
ENSG00000162434 JAK1 -370603 sc-eQTL 2.00e-01 -0.0777 0.0604 0.539 NK_HLA L2
ENSG00000213625 LEPROT -723436 sc-eQTL 8.50e-01 -0.0178 0.0941 0.539 NK_HLA L2
ENSG00000116678 LEPR -723501 sc-eQTL 4.89e-01 0.0599 0.0863 0.532 NK_cytokine L2
ENSG00000162434 JAK1 -370603 sc-eQTL 5.31e-01 -0.0316 0.0503 0.532 NK_cytokine L2
ENSG00000213625 LEPROT -723436 sc-eQTL 9.32e-02 -0.153 0.0909 0.532 NK_cytokine L2
ENSG00000162434 JAK1 -370603 sc-eQTL 3.40e-01 -0.0734 0.0767 0.504 PB L2
ENSG00000213625 LEPROT -723436 sc-eQTL 8.08e-01 -0.0263 0.108 0.504 PB L2
ENSG00000162434 JAK1 -370603 sc-eQTL 2.44e-01 0.0672 0.0575 0.533 Pro_T L2
ENSG00000162437 RAVER2 -47944 sc-eQTL 7.66e-01 0.0227 0.0762 0.533 Pro_T L2
ENSG00000213625 LEPROT -723436 sc-eQTL 3.16e-01 0.0901 0.0896 0.533 Pro_T L2
ENSG00000158966 CACHD1 227022 sc-eQTL 3.54e-01 -0.0622 0.067 0.534 Treg L2
ENSG00000162434 JAK1 -370603 sc-eQTL 6.35e-01 0.0339 0.0715 0.534 Treg L2
ENSG00000213625 LEPROT -723436 sc-eQTL 5.78e-01 -0.0517 0.0927 0.534 Treg L2
ENSG00000116678 LEPR -723501 sc-eQTL 5.62e-01 0.0512 0.088 0.524 cDC L2
ENSG00000162433 AK4 -450398 sc-eQTL 3.74e-02 -0.161 0.0769 0.524 cDC L2
ENSG00000162434 JAK1 -370603 sc-eQTL 7.64e-01 -0.0218 0.0726 0.524 cDC L2
ENSG00000162437 RAVER2 -47944 sc-eQTL 5.60e-01 0.0466 0.0798 0.524 cDC L2
ENSG00000213625 LEPROT -723436 sc-eQTL 9.58e-01 0.00467 0.0886 0.524 cDC L2
ENSG00000116678 LEPR -723501 sc-eQTL 9.26e-01 0.00803 0.0867 0.534 cMono_IL1B L2
ENSG00000162433 AK4 -450398 sc-eQTL 5.76e-02 -0.151 0.0791 0.534 cMono_IL1B L2
ENSG00000162434 JAK1 -370603 sc-eQTL 8.22e-01 -0.0163 0.0726 0.534 cMono_IL1B L2
ENSG00000213625 LEPROT -723436 sc-eQTL 3.76e-01 0.052 0.0585 0.534 cMono_IL1B L2
ENSG00000116678 LEPR -723501 sc-eQTL 2.44e-01 -0.0995 0.0852 0.534 cMono_S100A L2
ENSG00000162433 AK4 -450398 sc-eQTL 9.45e-01 -0.00564 0.0811 0.534 cMono_S100A L2
ENSG00000162434 JAK1 -370603 sc-eQTL 3.47e-01 0.0705 0.0747 0.534 cMono_S100A L2
ENSG00000213625 LEPROT -723436 sc-eQTL 5.31e-01 -0.0439 0.0699 0.534 cMono_S100A L2
ENSG00000162434 JAK1 -370603 sc-eQTL 7.01e-01 0.04 0.104 0.53 gdT L2
ENSG00000162437 RAVER2 -47944 sc-eQTL 5.80e-01 -0.0508 0.0916 0.53 gdT L2
ENSG00000213625 LEPROT -723436 sc-eQTL 7.78e-01 0.031 0.11 0.53 gdT L2
ENSG00000116678 LEPR -723501 sc-eQTL 6.90e-01 0.0332 0.0831 0.529 intMono L2
ENSG00000162433 AK4 -450398 sc-eQTL 3.47e-01 0.0736 0.0782 0.529 intMono L2
ENSG00000162434 JAK1 -370603 sc-eQTL 6.91e-01 0.0288 0.0724 0.529 intMono L2
ENSG00000213625 LEPROT -723436 sc-eQTL 1.47e-01 -0.101 0.0695 0.529 intMono L2
ENSG00000116678 LEPR -723501 sc-eQTL 1.20e-01 0.131 0.084 0.534 ncMono L2
ENSG00000162433 AK4 -450398 sc-eQTL 9.16e-01 -0.00798 0.0754 0.534 ncMono L2
ENSG00000162434 JAK1 -370603 sc-eQTL 9.13e-01 0.00668 0.061 0.534 ncMono L2
ENSG00000213625 LEPROT -723436 sc-eQTL 4.35e-01 0.0675 0.0864 0.534 ncMono L2
ENSG00000116678 LEPR -723501 sc-eQTL 5.58e-01 0.0529 0.0902 0.523 pDC L2
ENSG00000162433 AK4 -450398 sc-eQTL 2.40e-01 -0.0691 0.0586 0.523 pDC L2
ENSG00000162434 JAK1 -370603 sc-eQTL 8.08e-01 -0.0191 0.0786 0.523 pDC L2
ENSG00000162437 RAVER2 -47944 sc-eQTL 7.69e-01 -0.026 0.0886 0.523 pDC L2
ENSG00000213625 LEPROT -723436 sc-eQTL 5.19e-01 0.063 0.0974 0.523 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -370603 sc-eQTL 6.74e-01 0.0284 0.0675 0.534 B_Memory LOneK1K
ENSG00000213625 LEPROT -723436 sc-eQTL 8.54e-01 -0.016 0.0867 0.534 B_Memory LOneK1K
ENSG00000162434 JAK1 -370603 sc-eQTL 2.70e-01 -0.0721 0.0651 0.534 B_Naive LOneK1K
ENSG00000213625 LEPROT -723436 sc-eQTL 1.95e-01 -0.107 0.0822 0.534 B_Naive LOneK1K
ENSG00000116678 LEPR -723501 sc-eQTL 6.71e-01 -0.0361 0.0848 0.534 CD14_Mono LOneK1K
ENSG00000162433 AK4 -450398 sc-eQTL 1.48e-01 -0.117 0.0808 0.534 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -370603 sc-eQTL 7.74e-01 0.0195 0.0679 0.534 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -723436 sc-eQTL 6.22e-01 0.0281 0.0569 0.534 CD14_Mono LOneK1K
ENSG00000116678 LEPR -723501 sc-eQTL 3.74e-01 0.0753 0.0845 0.532 CD16_Mono LOneK1K
ENSG00000162433 AK4 -450398 sc-eQTL 8.58e-01 0.0137 0.0766 0.532 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -370603 sc-eQTL 6.93e-01 0.0204 0.0516 0.532 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -723436 sc-eQTL 8.18e-01 0.0165 0.0719 0.532 CD16_Mono LOneK1K
ENSG00000116678 LEPR -723501 sc-eQTL 3.41e-01 -0.0827 0.0866 0.532 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -370603 sc-eQTL 8.71e-01 -0.00663 0.0407 0.532 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -723436 sc-eQTL 1.45e-01 -0.131 0.0896 0.532 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 -551068 pQTL 0.0385 -0.0275 0.0133 0.00116 0.0 0.461
ENSG00000162433 AK4 -450398 eQTL 0.00216 -0.0698 0.0227 0.0 0.0 0.461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 AK4 -450398 8.25e-07 6.78e-07 1.45e-07 4.35e-07 1.77e-07 2.86e-07 6.02e-07 2.25e-07 7.08e-07 3.16e-07 9.39e-07 5.22e-07 9.65e-07 1.56e-07 3.86e-07 3.79e-07 4.3e-07 4.33e-07 2.92e-07 3.72e-07 2.26e-07 5.11e-07 4e-07 2.6e-07 1.2e-06 2.41e-07 4.97e-07 4.94e-07 4.88e-07 6.27e-07 3.66e-07 3.85e-08 9.79e-08 1.77e-07 3.32e-07 2.15e-07 2.36e-07 1.32e-07 7.63e-08 9.81e-09 3.03e-07 5.96e-07 4.47e-08 5.87e-09 2.03e-07 6.87e-08 1.49e-07 7.19e-08 4.9e-08