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Genes within 1Mb (chr1:64695950:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -371804 sc-eQTL 3.95e-01 -0.0458 0.0537 0.65 B L1
ENSG00000213625 LEPROT -724637 sc-eQTL 2.32e-02 -0.155 0.0679 0.65 B L1
ENSG00000158966 CACHD1 225821 sc-eQTL 8.00e-01 0.0129 0.051 0.65 CD4T L1
ENSG00000162434 JAK1 -371804 sc-eQTL 8.87e-01 -0.00759 0.0535 0.65 CD4T L1
ENSG00000213625 LEPROT -724637 sc-eQTL 9.73e-01 0.00281 0.0836 0.65 CD4T L1
ENSG00000116678 LEPR -724702 sc-eQTL 9.91e-01 -0.00104 0.0894 0.65 CD8T L1
ENSG00000158966 CACHD1 225821 sc-eQTL 7.44e-01 0.0144 0.044 0.65 CD8T L1
ENSG00000162434 JAK1 -371804 sc-eQTL 5.96e-01 -0.0368 0.0693 0.65 CD8T L1
ENSG00000213625 LEPROT -724637 sc-eQTL 9.41e-01 0.00684 0.0919 0.65 CD8T L1
ENSG00000116678 LEPR -724702 sc-eQTL 4.79e-01 -0.0617 0.087 0.642 DC L1
ENSG00000162433 AK4 -451599 sc-eQTL 3.75e-01 -0.0651 0.0731 0.642 DC L1
ENSG00000162434 JAK1 -371804 sc-eQTL 2.86e-02 -0.133 0.0602 0.642 DC L1
ENSG00000162437 RAVER2 -49145 sc-eQTL 1.49e-01 0.113 0.0777 0.642 DC L1
ENSG00000213625 LEPROT -724637 sc-eQTL 6.48e-01 0.0395 0.0864 0.642 DC L1
ENSG00000116678 LEPR -724702 sc-eQTL 7.92e-01 -0.0233 0.0883 0.65 Mono L1
ENSG00000162433 AK4 -451599 sc-eQTL 1.32e-01 0.121 0.0803 0.65 Mono L1
ENSG00000162434 JAK1 -371804 sc-eQTL 5.65e-01 -0.0332 0.0576 0.65 Mono L1
ENSG00000213625 LEPROT -724637 sc-eQTL 6.39e-01 0.0268 0.057 0.65 Mono L1
ENSG00000116678 LEPR -724702 sc-eQTL 2.76e-01 -0.093 0.0852 0.648 NK L1
ENSG00000162434 JAK1 -371804 sc-eQTL 3.19e-01 -0.0402 0.0403 0.648 NK L1
ENSG00000213625 LEPROT -724637 sc-eQTL 7.77e-01 0.0261 0.0921 0.648 NK L1
ENSG00000162434 JAK1 -371804 sc-eQTL 3.04e-01 -0.0594 0.0577 0.65 Other_T L1
ENSG00000162437 RAVER2 -49145 sc-eQTL 8.17e-01 -0.0195 0.0841 0.65 Other_T L1
ENSG00000213625 LEPROT -724637 sc-eQTL 6.21e-01 -0.045 0.0908 0.65 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -371804 sc-eQTL 3.79e-02 0.192 0.0916 0.628 B_Activated L2
ENSG00000213625 LEPROT -724637 sc-eQTL 9.50e-02 -0.161 0.0962 0.628 B_Activated L2
ENSG00000162434 JAK1 -371804 sc-eQTL 1.91e-01 -0.0998 0.0761 0.65 B_Intermediate L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.08e-01 -0.0914 0.0894 0.65 B_Intermediate L2
ENSG00000162434 JAK1 -371804 sc-eQTL 5.27e-01 -0.0492 0.0778 0.649 B_Memory L2
ENSG00000213625 LEPROT -724637 sc-eQTL 9.01e-01 -0.0113 0.0905 0.649 B_Memory L2
ENSG00000162434 JAK1 -371804 sc-eQTL 2.06e-01 -0.0874 0.0688 0.65 B_Naive1 L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.24e-02 -0.192 0.0891 0.65 B_Naive1 L2
ENSG00000162434 JAK1 -371804 sc-eQTL 2.70e-01 0.0799 0.0723 0.648 B_Naive2 L2
ENSG00000213625 LEPROT -724637 sc-eQTL 1.27e-02 -0.217 0.0862 0.648 B_Naive2 L2
ENSG00000158966 CACHD1 225821 sc-eQTL 5.36e-01 0.0208 0.0336 0.639 CD4_CTL L2
ENSG00000162434 JAK1 -371804 sc-eQTL 7.79e-01 -0.0233 0.0829 0.639 CD4_CTL L2
ENSG00000213625 LEPROT -724637 sc-eQTL 5.84e-01 -0.0523 0.0952 0.639 CD4_CTL L2
ENSG00000158966 CACHD1 225821 sc-eQTL 9.15e-01 0.00547 0.0512 0.65 CD4_Naive L2
ENSG00000162434 JAK1 -371804 sc-eQTL 9.23e-01 -0.00508 0.0522 0.65 CD4_Naive L2
ENSG00000213625 LEPROT -724637 sc-eQTL 9.04e-01 -0.0102 0.0847 0.65 CD4_Naive L2
ENSG00000158966 CACHD1 225821 sc-eQTL 5.93e-01 0.0385 0.072 0.65 CD4_TCM L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.99e-01 0.0228 0.0589 0.65 CD4_TCM L2
ENSG00000213625 LEPROT -724637 sc-eQTL 9.79e-02 0.141 0.0849 0.65 CD4_TCM L2
ENSG00000158966 CACHD1 225821 sc-eQTL 3.40e-01 0.0524 0.0548 0.65 CD4_TEM L2
ENSG00000162434 JAK1 -371804 sc-eQTL 7.93e-01 0.0205 0.0781 0.65 CD4_TEM L2
ENSG00000213625 LEPROT -724637 sc-eQTL 7.41e-01 -0.0307 0.0928 0.65 CD4_TEM L2
ENSG00000116678 LEPR -724702 sc-eQTL 3.05e-01 0.0907 0.0882 0.65 CD8_CTL L2
ENSG00000158966 CACHD1 225821 sc-eQTL 6.65e-01 -0.0172 0.0398 0.65 CD8_CTL L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.34e-01 -0.0355 0.0742 0.65 CD8_CTL L2
ENSG00000213625 LEPROT -724637 sc-eQTL 9.63e-01 0.00425 0.0908 0.65 CD8_CTL L2
ENSG00000116678 LEPR -724702 sc-eQTL 5.53e-01 -0.0518 0.0872 0.65 CD8_Naive L2
ENSG00000158966 CACHD1 225821 sc-eQTL 8.02e-01 -0.0152 0.0605 0.65 CD8_Naive L2
ENSG00000162434 JAK1 -371804 sc-eQTL 7.23e-01 -0.0258 0.0728 0.65 CD8_Naive L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.20e-01 0.0887 0.089 0.65 CD8_Naive L2
ENSG00000116678 LEPR -724702 sc-eQTL 4.75e-01 -0.0639 0.0894 0.646 CD8_TCM L2
ENSG00000158966 CACHD1 225821 sc-eQTL 9.68e-01 -0.00194 0.0483 0.646 CD8_TCM L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.81e-01 0.032 0.0777 0.646 CD8_TCM L2
ENSG00000213625 LEPROT -724637 sc-eQTL 7.23e-01 0.0345 0.0969 0.646 CD8_TCM L2
ENSG00000116678 LEPR -724702 sc-eQTL 1.50e-01 -0.118 0.0819 0.653 CD8_TEM L2
ENSG00000158966 CACHD1 225821 sc-eQTL 4.52e-01 0.0148 0.0197 0.653 CD8_TEM L2
ENSG00000162434 JAK1 -371804 sc-eQTL 3.18e-01 -0.093 0.0929 0.653 CD8_TEM L2
ENSG00000213625 LEPROT -724637 sc-eQTL 4.86e-01 -0.067 0.0959 0.653 CD8_TEM L2
ENSG00000162434 JAK1 -371804 sc-eQTL 9.49e-01 0.0051 0.0792 0.645 MAIT L2
ENSG00000162437 RAVER2 -49145 sc-eQTL 7.66e-01 -0.0251 0.0844 0.645 MAIT L2
ENSG00000213625 LEPROT -724637 sc-eQTL 7.75e-01 -0.0262 0.0912 0.645 MAIT L2
ENSG00000116678 LEPR -724702 sc-eQTL 1.45e-01 -0.125 0.0854 0.651 NK_CD56bright L2
ENSG00000162434 JAK1 -371804 sc-eQTL 7.65e-01 0.0176 0.0588 0.651 NK_CD56bright L2
ENSG00000213625 LEPROT -724637 sc-eQTL 5.66e-01 0.0555 0.0965 0.651 NK_CD56bright L2
ENSG00000116678 LEPR -724702 sc-eQTL 1.86e-01 -0.119 0.0897 0.649 NK_CD56dim L2
ENSG00000162434 JAK1 -371804 sc-eQTL 9.27e-01 -0.00434 0.047 0.649 NK_CD56dim L2
ENSG00000213625 LEPROT -724637 sc-eQTL 7.65e-01 0.0285 0.0951 0.649 NK_CD56dim L2
ENSG00000116678 LEPR -724702 sc-eQTL 6.49e-01 -0.0362 0.0793 0.653 NK_HLA L2
ENSG00000162434 JAK1 -371804 sc-eQTL 8.89e-02 -0.105 0.0613 0.653 NK_HLA L2
ENSG00000213625 LEPROT -724637 sc-eQTL 7.54e-01 -0.03 0.0957 0.653 NK_HLA L2
ENSG00000116678 LEPR -724702 sc-eQTL 2.95e-01 0.0931 0.0887 0.649 NK_cytokine L2
ENSG00000162434 JAK1 -371804 sc-eQTL 2.11e-01 -0.0646 0.0516 0.649 NK_cytokine L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.54e-01 -0.0873 0.0939 0.649 NK_cytokine L2
ENSG00000162434 JAK1 -371804 sc-eQTL 3.96e-01 -0.0632 0.0741 0.6 PB L2
ENSG00000213625 LEPROT -724637 sc-eQTL 6.68e-01 -0.0448 0.104 0.6 PB L2
ENSG00000162434 JAK1 -371804 sc-eQTL 5.07e-01 0.0392 0.059 0.65 Pro_T L2
ENSG00000162437 RAVER2 -49145 sc-eQTL 4.20e-01 0.0628 0.0778 0.65 Pro_T L2
ENSG00000213625 LEPROT -724637 sc-eQTL 5.24e-01 0.0586 0.0918 0.65 Pro_T L2
ENSG00000158966 CACHD1 225821 sc-eQTL 7.26e-01 -0.0239 0.0683 0.65 Treg L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.64e-01 0.0317 0.0728 0.65 Treg L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.22e-01 -0.0935 0.0942 0.65 Treg L2
ENSG00000116678 LEPR -724702 sc-eQTL 7.82e-01 0.0243 0.0875 0.639 cDC L2
ENSG00000162433 AK4 -451599 sc-eQTL 4.33e-01 -0.0607 0.0772 0.639 cDC L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.60e-02 -0.132 0.0715 0.639 cDC L2
ENSG00000162437 RAVER2 -49145 sc-eQTL 7.95e-02 0.139 0.0787 0.639 cDC L2
ENSG00000213625 LEPROT -724637 sc-eQTL 8.94e-01 -0.0117 0.088 0.639 cDC L2
ENSG00000116678 LEPR -724702 sc-eQTL 4.36e-01 0.0692 0.0887 0.65 cMono_IL1B L2
ENSG00000162433 AK4 -451599 sc-eQTL 5.13e-01 0.0534 0.0816 0.65 cMono_IL1B L2
ENSG00000162434 JAK1 -371804 sc-eQTL 7.94e-02 -0.13 0.0738 0.65 cMono_IL1B L2
ENSG00000213625 LEPROT -724637 sc-eQTL 5.16e-01 0.039 0.06 0.65 cMono_IL1B L2
ENSG00000116678 LEPR -724702 sc-eQTL 4.31e-01 -0.0688 0.0871 0.65 cMono_S100A L2
ENSG00000162433 AK4 -451599 sc-eQTL 5.92e-02 0.156 0.0821 0.65 cMono_S100A L2
ENSG00000162434 JAK1 -371804 sc-eQTL 9.42e-01 0.00561 0.0764 0.65 cMono_S100A L2
ENSG00000213625 LEPROT -724637 sc-eQTL 6.26e-01 -0.0349 0.0714 0.65 cMono_S100A L2
ENSG00000162434 JAK1 -371804 sc-eQTL 5.02e-01 -0.0733 0.109 0.67 gdT L2
ENSG00000162437 RAVER2 -49145 sc-eQTL 5.77e-01 -0.0536 0.0959 0.67 gdT L2
ENSG00000213625 LEPROT -724637 sc-eQTL 5.81e-01 -0.0635 0.115 0.67 gdT L2
ENSG00000116678 LEPR -724702 sc-eQTL 9.74e-01 0.00276 0.0841 0.642 intMono L2
ENSG00000162433 AK4 -451599 sc-eQTL 2.12e-01 0.0988 0.0789 0.642 intMono L2
ENSG00000162434 JAK1 -371804 sc-eQTL 6.14e-01 -0.037 0.0732 0.642 intMono L2
ENSG00000213625 LEPROT -724637 sc-eQTL 2.38e-01 -0.0832 0.0703 0.642 intMono L2
ENSG00000116678 LEPR -724702 sc-eQTL 6.02e-01 0.0445 0.0854 0.652 ncMono L2
ENSG00000162433 AK4 -451599 sc-eQTL 3.12e-01 -0.077 0.076 0.652 ncMono L2
ENSG00000162434 JAK1 -371804 sc-eQTL 2.35e-01 -0.0732 0.0614 0.652 ncMono L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.35e-01 -0.0843 0.0872 0.652 ncMono L2
ENSG00000116678 LEPR -724702 sc-eQTL 9.81e-02 -0.148 0.0892 0.63 pDC L2
ENSG00000162433 AK4 -451599 sc-eQTL 7.42e-01 -0.0193 0.0587 0.63 pDC L2
ENSG00000162434 JAK1 -371804 sc-eQTL 4.25e-01 -0.0625 0.0782 0.63 pDC L2
ENSG00000162437 RAVER2 -49145 sc-eQTL 7.96e-01 0.0229 0.0883 0.63 pDC L2
ENSG00000213625 LEPROT -724637 sc-eQTL 3.97e-01 0.0825 0.097 0.63 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -371804 sc-eQTL 6.98e-01 -0.0266 0.0685 0.65 B_Memory LOneK1K
ENSG00000213625 LEPROT -724637 sc-eQTL 5.37e-01 -0.0544 0.088 0.65 B_Memory LOneK1K
ENSG00000162434 JAK1 -371804 sc-eQTL 4.88e-01 -0.0464 0.0668 0.65 B_Naive LOneK1K
ENSG00000213625 LEPROT -724637 sc-eQTL 1.91e-03 -0.26 0.0826 0.65 B_Naive LOneK1K
ENSG00000116678 LEPR -724702 sc-eQTL 9.29e-01 0.00771 0.087 0.65 CD14_Mono LOneK1K
ENSG00000162433 AK4 -451599 sc-eQTL 1.28e-01 0.126 0.0828 0.65 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -371804 sc-eQTL 3.83e-01 -0.0608 0.0696 0.65 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -724637 sc-eQTL 6.16e-01 0.0293 0.0584 0.65 CD14_Mono LOneK1K
ENSG00000116678 LEPR -724702 sc-eQTL 6.85e-01 -0.035 0.0861 0.649 CD16_Mono LOneK1K
ENSG00000162433 AK4 -451599 sc-eQTL 8.16e-01 -0.0181 0.078 0.649 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -371804 sc-eQTL 4.12e-01 -0.0431 0.0524 0.649 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -724637 sc-eQTL 3.42e-01 -0.0695 0.073 0.649 CD16_Mono LOneK1K
ENSG00000116678 LEPR -724702 sc-eQTL 5.05e-01 -0.0584 0.0876 0.649 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -371804 sc-eQTL 2.66e-01 -0.0457 0.041 0.649 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -724637 sc-eQTL 8.64e-01 -0.0155 0.0909 0.649 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162437 RAVER2 -49145 eQTL 0.0156 -0.0571 0.0236 0.0 0.0 0.328

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina