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Genes within 1Mb (chr1:64683833:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -383921 sc-eQTL 3.43e-01 -0.0515 0.0542 0.397 B L1
ENSG00000213625 LEPROT -736754 sc-eQTL 7.70e-01 -0.0203 0.0694 0.397 B L1
ENSG00000158966 CACHD1 213704 sc-eQTL 2.16e-01 -0.0631 0.0509 0.397 CD4T L1
ENSG00000162434 JAK1 -383921 sc-eQTL 9.08e-01 -0.0062 0.0535 0.397 CD4T L1
ENSG00000213625 LEPROT -736754 sc-eQTL 3.11e-01 0.0848 0.0834 0.397 CD4T L1
ENSG00000116678 LEPR -736819 sc-eQTL 7.36e-01 -0.0307 0.091 0.397 CD8T L1
ENSG00000158966 CACHD1 213704 sc-eQTL 6.49e-02 -0.0824 0.0444 0.397 CD8T L1
ENSG00000162434 JAK1 -383921 sc-eQTL 3.67e-01 0.0637 0.0704 0.397 CD8T L1
ENSG00000213625 LEPROT -736754 sc-eQTL 3.49e-01 0.0877 0.0933 0.397 CD8T L1
ENSG00000116678 LEPR -736819 sc-eQTL 7.09e-01 0.0337 0.0903 0.396 DC L1
ENSG00000162433 AK4 -463716 sc-eQTL 9.17e-01 0.00795 0.076 0.396 DC L1
ENSG00000162434 JAK1 -383921 sc-eQTL 6.34e-01 -0.0301 0.0631 0.396 DC L1
ENSG00000162437 RAVER2 -61262 sc-eQTL 9.19e-01 -0.00827 0.081 0.396 DC L1
ENSG00000213625 LEPROT -736754 sc-eQTL 7.82e-01 0.0249 0.0896 0.396 DC L1
ENSG00000116678 LEPR -736819 sc-eQTL 9.70e-01 0.00337 0.0893 0.397 Mono L1
ENSG00000162433 AK4 -463716 sc-eQTL 9.25e-01 0.00772 0.0817 0.397 Mono L1
ENSG00000162434 JAK1 -383921 sc-eQTL 8.10e-01 0.014 0.0583 0.397 Mono L1
ENSG00000213625 LEPROT -736754 sc-eQTL 9.66e-01 0.00247 0.0577 0.397 Mono L1
ENSG00000116678 LEPR -736819 sc-eQTL 8.05e-02 -0.15 0.0852 0.397 NK L1
ENSG00000162434 JAK1 -383921 sc-eQTL 4.70e-01 0.0293 0.0405 0.397 NK L1
ENSG00000213625 LEPROT -736754 sc-eQTL 2.68e-01 -0.102 0.0923 0.397 NK L1
ENSG00000162434 JAK1 -383921 sc-eQTL 1.20e-01 0.0915 0.0586 0.397 Other_T L1
ENSG00000162437 RAVER2 -61262 sc-eQTL 7.84e-01 -0.0235 0.0856 0.397 Other_T L1
ENSG00000213625 LEPROT -736754 sc-eQTL 7.04e-01 -0.0352 0.0925 0.397 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -383921 sc-eQTL 9.18e-01 -0.00996 0.0968 0.408 B_Activated L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.89e-01 0.0405 0.101 0.408 B_Activated L2
ENSG00000162434 JAK1 -383921 sc-eQTL 8.95e-01 0.0103 0.0775 0.399 B_Intermediate L2
ENSG00000213625 LEPROT -736754 sc-eQTL 7.28e-01 -0.0316 0.0909 0.399 B_Intermediate L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.00e-01 0.0534 0.0791 0.401 B_Memory L2
ENSG00000213625 LEPROT -736754 sc-eQTL 9.49e-03 -0.237 0.0905 0.401 B_Memory L2
ENSG00000162434 JAK1 -383921 sc-eQTL 3.65e-01 -0.0633 0.0697 0.397 B_Naive1 L2
ENSG00000213625 LEPROT -736754 sc-eQTL 7.13e-01 -0.0335 0.091 0.397 B_Naive1 L2
ENSG00000162434 JAK1 -383921 sc-eQTL 6.85e-02 -0.134 0.073 0.399 B_Naive2 L2
ENSG00000213625 LEPROT -736754 sc-eQTL 3.78e-01 0.0782 0.0885 0.399 B_Naive2 L2
ENSG00000158966 CACHD1 213704 sc-eQTL 1.44e-01 0.0493 0.0336 0.405 CD4_CTL L2
ENSG00000162434 JAK1 -383921 sc-eQTL 2.07e-01 0.105 0.083 0.405 CD4_CTL L2
ENSG00000213625 LEPROT -736754 sc-eQTL 2.65e-01 -0.107 0.0955 0.405 CD4_CTL L2
ENSG00000158966 CACHD1 213704 sc-eQTL 9.99e-02 -0.0835 0.0505 0.397 CD4_Naive L2
ENSG00000162434 JAK1 -383921 sc-eQTL 7.60e-01 -0.0159 0.0519 0.397 CD4_Naive L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.27e-01 0.041 0.0841 0.397 CD4_Naive L2
ENSG00000158966 CACHD1 213704 sc-eQTL 9.96e-01 0.000345 0.0727 0.397 CD4_TCM L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.57e-01 0.035 0.0595 0.397 CD4_TCM L2
ENSG00000213625 LEPROT -736754 sc-eQTL 2.05e-02 0.199 0.0852 0.397 CD4_TCM L2
ENSG00000158966 CACHD1 213704 sc-eQTL 9.48e-01 0.00368 0.0558 0.397 CD4_TEM L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.67e-02 0.151 0.0787 0.397 CD4_TEM L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.18e-02 0.176 0.0935 0.397 CD4_TEM L2
ENSG00000116678 LEPR -736819 sc-eQTL 7.12e-01 -0.032 0.0866 0.397 CD8_CTL L2
ENSG00000158966 CACHD1 213704 sc-eQTL 9.17e-02 0.0655 0.0387 0.397 CD8_CTL L2
ENSG00000162434 JAK1 -383921 sc-eQTL 8.81e-01 0.0109 0.0727 0.397 CD8_CTL L2
ENSG00000213625 LEPROT -736754 sc-eQTL 3.54e-01 0.0824 0.0887 0.397 CD8_CTL L2
ENSG00000116678 LEPR -736819 sc-eQTL 3.18e-01 -0.0897 0.0896 0.397 CD8_Naive L2
ENSG00000158966 CACHD1 213704 sc-eQTL 1.25e-01 -0.0954 0.0619 0.397 CD8_Naive L2
ENSG00000162434 JAK1 -383921 sc-eQTL 6.02e-01 -0.039 0.0748 0.397 CD8_Naive L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.89e-01 0.0367 0.0917 0.397 CD8_Naive L2
ENSG00000116678 LEPR -736819 sc-eQTL 8.73e-01 -0.0148 0.0923 0.396 CD8_TCM L2
ENSG00000158966 CACHD1 213704 sc-eQTL 5.62e-01 -0.029 0.0498 0.396 CD8_TCM L2
ENSG00000162434 JAK1 -383921 sc-eQTL 2.67e-01 0.089 0.0799 0.396 CD8_TCM L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.45e-01 0.0462 0.1 0.396 CD8_TCM L2
ENSG00000116678 LEPR -736819 sc-eQTL 5.08e-02 0.156 0.0793 0.411 CD8_TEM L2
ENSG00000158966 CACHD1 213704 sc-eQTL 5.21e-01 -0.0123 0.0191 0.411 CD8_TEM L2
ENSG00000162434 JAK1 -383921 sc-eQTL 1.78e-03 0.28 0.0883 0.411 CD8_TEM L2
ENSG00000213625 LEPROT -736754 sc-eQTL 5.23e-01 0.0596 0.0932 0.411 CD8_TEM L2
ENSG00000162434 JAK1 -383921 sc-eQTL 1.02e-01 0.13 0.0793 0.396 MAIT L2
ENSG00000162437 RAVER2 -61262 sc-eQTL 8.26e-01 0.0188 0.085 0.396 MAIT L2
ENSG00000213625 LEPROT -736754 sc-eQTL 4.70e-01 0.0665 0.0918 0.396 MAIT L2
ENSG00000116678 LEPR -736819 sc-eQTL 4.77e-01 0.0603 0.0847 0.402 NK_CD56bright L2
ENSG00000162434 JAK1 -383921 sc-eQTL 7.42e-01 0.0192 0.0581 0.402 NK_CD56bright L2
ENSG00000213625 LEPROT -736754 sc-eQTL 9.82e-01 -0.00219 0.0954 0.402 NK_CD56bright L2
ENSG00000116678 LEPR -736819 sc-eQTL 5.56e-02 -0.175 0.0907 0.399 NK_CD56dim L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.32e-01 0.0299 0.0478 0.399 NK_CD56dim L2
ENSG00000213625 LEPROT -736754 sc-eQTL 1.68e-01 -0.133 0.0963 0.399 NK_CD56dim L2
ENSG00000116678 LEPR -736819 sc-eQTL 9.33e-01 -0.00668 0.0795 0.404 NK_HLA L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.32e-01 -0.0387 0.0618 0.404 NK_HLA L2
ENSG00000213625 LEPROT -736754 sc-eQTL 1.95e-01 0.124 0.0956 0.404 NK_HLA L2
ENSG00000116678 LEPR -736819 sc-eQTL 2.26e-01 -0.106 0.087 0.399 NK_cytokine L2
ENSG00000162434 JAK1 -383921 sc-eQTL 6.35e-01 0.0242 0.0508 0.399 NK_cytokine L2
ENSG00000213625 LEPROT -736754 sc-eQTL 1.50e-01 -0.133 0.092 0.399 NK_cytokine L2
ENSG00000162434 JAK1 -383921 sc-eQTL 4.88e-01 0.0572 0.0822 0.393 PB L2
ENSG00000213625 LEPROT -736754 sc-eQTL 2.75e-01 0.126 0.115 0.393 PB L2
ENSG00000162434 JAK1 -383921 sc-eQTL 3.30e-01 0.0576 0.059 0.4 Pro_T L2
ENSG00000162437 RAVER2 -61262 sc-eQTL 4.73e-01 -0.056 0.0779 0.4 Pro_T L2
ENSG00000213625 LEPROT -736754 sc-eQTL 4.87e-01 -0.064 0.0919 0.4 Pro_T L2
ENSG00000158966 CACHD1 213704 sc-eQTL 9.54e-02 0.116 0.0694 0.397 Treg L2
ENSG00000162434 JAK1 -383921 sc-eQTL 4.72e-01 -0.0535 0.0744 0.397 Treg L2
ENSG00000213625 LEPROT -736754 sc-eQTL 7.08e-01 0.0362 0.0965 0.397 Treg L2
ENSG00000116678 LEPR -736819 sc-eQTL 9.63e-01 0.00429 0.0932 0.388 cDC L2
ENSG00000162433 AK4 -463716 sc-eQTL 9.11e-01 0.00918 0.0823 0.388 cDC L2
ENSG00000162434 JAK1 -383921 sc-eQTL 6.57e-01 -0.0341 0.0768 0.388 cDC L2
ENSG00000162437 RAVER2 -61262 sc-eQTL 8.61e-01 -0.0147 0.0844 0.388 cDC L2
ENSG00000213625 LEPROT -736754 sc-eQTL 4.85e-01 0.0654 0.0935 0.388 cDC L2
ENSG00000116678 LEPR -736819 sc-eQTL 2.75e-01 0.0986 0.0901 0.397 cMono_IL1B L2
ENSG00000162433 AK4 -463716 sc-eQTL 9.71e-01 0.00305 0.0832 0.397 cMono_IL1B L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.11e-01 0.0498 0.0755 0.397 cMono_IL1B L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.94e-01 0.024 0.0611 0.397 cMono_IL1B L2
ENSG00000116678 LEPR -736819 sc-eQTL 3.58e-01 -0.0824 0.0895 0.397 cMono_S100A L2
ENSG00000162433 AK4 -463716 sc-eQTL 9.75e-01 0.00269 0.085 0.397 cMono_S100A L2
ENSG00000162434 JAK1 -383921 sc-eQTL 7.50e-01 -0.025 0.0784 0.397 cMono_S100A L2
ENSG00000213625 LEPROT -736754 sc-eQTL 3.88e-01 -0.0634 0.0733 0.397 cMono_S100A L2
ENSG00000162434 JAK1 -383921 sc-eQTL 4.50e-01 0.0823 0.109 0.403 gdT L2
ENSG00000162437 RAVER2 -61262 sc-eQTL 6.88e-01 0.0385 0.0957 0.403 gdT L2
ENSG00000213625 LEPROT -736754 sc-eQTL 6.43e-01 0.0533 0.115 0.403 gdT L2
ENSG00000116678 LEPR -736819 sc-eQTL 9.29e-01 0.00785 0.088 0.389 intMono L2
ENSG00000162433 AK4 -463716 sc-eQTL 5.02e-01 0.0557 0.0828 0.389 intMono L2
ENSG00000162434 JAK1 -383921 sc-eQTL 4.54e-01 0.0574 0.0766 0.389 intMono L2
ENSG00000213625 LEPROT -736754 sc-eQTL 9.27e-03 0.191 0.0727 0.389 intMono L2
ENSG00000116678 LEPR -736819 sc-eQTL 8.02e-01 0.0215 0.0855 0.396 ncMono L2
ENSG00000162433 AK4 -463716 sc-eQTL 6.29e-01 0.0369 0.0762 0.396 ncMono L2
ENSG00000162434 JAK1 -383921 sc-eQTL 6.86e-02 0.112 0.0612 0.396 ncMono L2
ENSG00000213625 LEPROT -736754 sc-eQTL 7.00e-01 -0.0338 0.0875 0.396 ncMono L2
ENSG00000116678 LEPR -736819 sc-eQTL 6.01e-01 0.0512 0.0976 0.39 pDC L2
ENSG00000162433 AK4 -463716 sc-eQTL 1.26e-01 0.0973 0.0632 0.39 pDC L2
ENSG00000162434 JAK1 -383921 sc-eQTL 5.10e-01 0.0561 0.085 0.39 pDC L2
ENSG00000162437 RAVER2 -61262 sc-eQTL 7.56e-01 0.0299 0.0959 0.39 pDC L2
ENSG00000213625 LEPROT -736754 sc-eQTL 9.90e-01 0.00131 0.106 0.39 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -383921 sc-eQTL 6.78e-01 0.0284 0.0685 0.397 B_Memory LOneK1K
ENSG00000213625 LEPROT -736754 sc-eQTL 4.23e-01 -0.0705 0.0879 0.397 B_Memory LOneK1K
ENSG00000162434 JAK1 -383921 sc-eQTL 1.27e-01 -0.103 0.0672 0.397 B_Naive LOneK1K
ENSG00000213625 LEPROT -736754 sc-eQTL 9.31e-01 -0.00739 0.0855 0.397 B_Naive LOneK1K
ENSG00000116678 LEPR -736819 sc-eQTL 9.63e-01 0.00415 0.0886 0.397 CD14_Mono LOneK1K
ENSG00000162433 AK4 -463716 sc-eQTL 8.48e-01 -0.0162 0.0848 0.397 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -383921 sc-eQTL 8.72e-01 0.0114 0.071 0.397 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -736754 sc-eQTL 4.22e-01 -0.0478 0.0594 0.397 CD14_Mono LOneK1K
ENSG00000116678 LEPR -736819 sc-eQTL 9.84e-01 0.00174 0.0887 0.394 CD16_Mono LOneK1K
ENSG00000162433 AK4 -463716 sc-eQTL 4.55e-01 0.06 0.0802 0.394 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -383921 sc-eQTL 2.42e-02 0.121 0.0534 0.394 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -736754 sc-eQTL 4.45e-02 0.151 0.0746 0.394 CD16_Mono LOneK1K
ENSG00000116678 LEPR -736819 sc-eQTL 5.46e-02 -0.17 0.0879 0.399 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -383921 sc-eQTL 4.30e-01 0.0329 0.0415 0.399 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -736754 sc-eQTL 2.06e-01 -0.116 0.0916 0.399 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116675 DNAJC6 -564386 pQTL 0.0171 -0.031 0.013 0.0 0.0 0.407
ENSG00000162434 JAK1 -282716 eQTL 0.00129 0.0481 0.0149 0.0 0.0 0.416

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -282716 3.99e-06 3.13e-06 7.53e-07 1.96e-06 1.32e-06 1.17e-06 2.26e-06 9.78e-07 3.32e-06 2.08e-06 3.2e-06 2.58e-06 4.86e-06 1.41e-06 1.2e-06 2.96e-06 1.75e-06 2.03e-06 1.45e-06 9.5e-07 3e-06 4.19e-06 3.25e-06 1.82e-06 4.53e-06 1.67e-06 2.43e-06 1.44e-06 3.88e-06 2.52e-06 1.97e-06 4.31e-07 7.94e-07 1.96e-06 2.04e-06 9.58e-07 9.67e-07 4.58e-07 1.28e-06 3.8e-07 5.19e-07 4.18e-06 4.73e-07 1.64e-07 4.86e-07 1.03e-06 1.15e-06 6.81e-07 5.44e-07