logo

Genes within 1Mb (chr1:64669385:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -398369 sc-eQTL 4.83e-01 -0.0381 0.0543 0.66 B L1
ENSG00000213625 LEPROT -751202 sc-eQTL 1.18e-01 0.108 0.069 0.66 B L1
ENSG00000158966 CACHD1 199256 sc-eQTL 7.56e-01 -0.0156 0.05 0.66 CD4T L1
ENSG00000162434 JAK1 -398369 sc-eQTL 8.60e-01 0.00923 0.0524 0.66 CD4T L1
ENSG00000213625 LEPROT -751202 sc-eQTL 2.96e-01 0.0856 0.0817 0.66 CD4T L1
ENSG00000116678 LEPR -751267 sc-eQTL 6.13e-01 -0.0449 0.0887 0.66 CD8T L1
ENSG00000158966 CACHD1 199256 sc-eQTL 2.16e-01 -0.054 0.0435 0.66 CD8T L1
ENSG00000162434 JAK1 -398369 sc-eQTL 1.71e-01 0.0941 0.0685 0.66 CD8T L1
ENSG00000213625 LEPROT -751202 sc-eQTL 6.22e-01 0.0451 0.0912 0.66 CD8T L1
ENSG00000116678 LEPR -751267 sc-eQTL 3.72e-01 0.0805 0.09 0.664 DC L1
ENSG00000162433 AK4 -478164 sc-eQTL 2.94e-01 -0.0794 0.0756 0.664 DC L1
ENSG00000162434 JAK1 -398369 sc-eQTL 1.67e-01 -0.0871 0.0627 0.664 DC L1
ENSG00000162437 RAVER2 -75710 sc-eQTL 6.37e-01 -0.0382 0.0807 0.664 DC L1
ENSG00000213625 LEPROT -751202 sc-eQTL 6.29e-01 0.0432 0.0893 0.664 DC L1
ENSG00000116678 LEPR -751267 sc-eQTL 6.40e-01 0.0414 0.0884 0.66 Mono L1
ENSG00000162433 AK4 -478164 sc-eQTL 1.96e-01 -0.105 0.0806 0.66 Mono L1
ENSG00000162434 JAK1 -398369 sc-eQTL 5.53e-01 -0.0343 0.0577 0.66 Mono L1
ENSG00000213625 LEPROT -751202 sc-eQTL 9.63e-01 -0.00268 0.0572 0.66 Mono L1
ENSG00000116678 LEPR -751267 sc-eQTL 8.00e-01 0.022 0.0869 0.661 NK L1
ENSG00000162434 JAK1 -398369 sc-eQTL 3.68e-01 0.037 0.041 0.661 NK L1
ENSG00000213625 LEPROT -751202 sc-eQTL 4.59e-01 -0.0694 0.0935 0.661 NK L1
ENSG00000162434 JAK1 -398369 sc-eQTL 5.16e-02 0.115 0.0588 0.66 Other_T L1
ENSG00000162437 RAVER2 -75710 sc-eQTL 6.67e-01 -0.0372 0.0862 0.66 Other_T L1
ENSG00000213625 LEPROT -751202 sc-eQTL 3.24e-01 0.092 0.093 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -398369 sc-eQTL 3.27e-01 0.0926 0.0941 0.671 B_Activated L2
ENSG00000213625 LEPROT -751202 sc-eQTL 5.55e-01 -0.0583 0.0986 0.671 B_Activated L2
ENSG00000162434 JAK1 -398369 sc-eQTL 2.74e-01 -0.0846 0.0771 0.661 B_Intermediate L2
ENSG00000213625 LEPROT -751202 sc-eQTL 6.78e-01 -0.0376 0.0906 0.661 B_Intermediate L2
ENSG00000162434 JAK1 -398369 sc-eQTL 5.46e-01 -0.0475 0.0786 0.662 B_Memory L2
ENSG00000213625 LEPROT -751202 sc-eQTL 3.59e-01 -0.0839 0.0912 0.662 B_Memory L2
ENSG00000162434 JAK1 -398369 sc-eQTL 6.05e-01 -0.0363 0.0702 0.66 B_Naive1 L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.31e-01 0.138 0.0911 0.66 B_Naive1 L2
ENSG00000162434 JAK1 -398369 sc-eQTL 2.43e-01 -0.087 0.0743 0.663 B_Naive2 L2
ENSG00000213625 LEPROT -751202 sc-eQTL 9.52e-01 -0.00546 0.0899 0.663 B_Naive2 L2
ENSG00000158966 CACHD1 199256 sc-eQTL 1.63e-01 0.0491 0.0351 0.67 CD4_CTL L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.29e-01 0.0689 0.0869 0.67 CD4_CTL L2
ENSG00000213625 LEPROT -751202 sc-eQTL 2.85e-01 -0.107 0.0997 0.67 CD4_CTL L2
ENSG00000158966 CACHD1 199256 sc-eQTL 3.81e-01 -0.0436 0.0497 0.66 CD4_Naive L2
ENSG00000162434 JAK1 -398369 sc-eQTL 9.95e-01 -0.000323 0.0508 0.66 CD4_Naive L2
ENSG00000213625 LEPROT -751202 sc-eQTL 5.36e-01 0.051 0.0823 0.66 CD4_Naive L2
ENSG00000158966 CACHD1 199256 sc-eQTL 7.73e-01 0.0206 0.0714 0.66 CD4_TCM L2
ENSG00000162434 JAK1 -398369 sc-eQTL 2.25e-01 0.0708 0.0582 0.66 CD4_TCM L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.22e-01 0.131 0.0842 0.66 CD4_TCM L2
ENSG00000158966 CACHD1 199256 sc-eQTL 8.23e-01 0.0124 0.0554 0.66 CD4_TEM L2
ENSG00000162434 JAK1 -398369 sc-eQTL 2.00e-01 0.101 0.0785 0.66 CD4_TEM L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.31e-01 0.141 0.0931 0.66 CD4_TEM L2
ENSG00000116678 LEPR -751267 sc-eQTL 3.94e-01 -0.0739 0.0866 0.66 CD8_CTL L2
ENSG00000158966 CACHD1 199256 sc-eQTL 4.91e-01 0.0269 0.039 0.66 CD8_CTL L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.22e-01 0.0585 0.0727 0.66 CD8_CTL L2
ENSG00000213625 LEPROT -751202 sc-eQTL 7.51e-01 0.0282 0.089 0.66 CD8_CTL L2
ENSG00000116678 LEPR -751267 sc-eQTL 5.04e-01 -0.058 0.0868 0.66 CD8_Naive L2
ENSG00000158966 CACHD1 199256 sc-eQTL 4.65e-01 -0.044 0.0601 0.66 CD8_Naive L2
ENSG00000162434 JAK1 -398369 sc-eQTL 6.55e-01 -0.0324 0.0724 0.66 CD8_Naive L2
ENSG00000213625 LEPROT -751202 sc-eQTL 6.13e-01 -0.0449 0.0887 0.66 CD8_Naive L2
ENSG00000116678 LEPR -751267 sc-eQTL 2.59e-01 -0.101 0.0892 0.662 CD8_TCM L2
ENSG00000158966 CACHD1 199256 sc-eQTL 5.03e-01 -0.0324 0.0483 0.662 CD8_TCM L2
ENSG00000162434 JAK1 -398369 sc-eQTL 6.77e-01 0.0324 0.0777 0.662 CD8_TCM L2
ENSG00000213625 LEPROT -751202 sc-eQTL 7.67e-01 -0.0288 0.097 0.662 CD8_TCM L2
ENSG00000116678 LEPR -751267 sc-eQTL 1.54e-01 0.115 0.0804 0.667 CD8_TEM L2
ENSG00000158966 CACHD1 199256 sc-eQTL 2.10e-01 -0.0242 0.0193 0.667 CD8_TEM L2
ENSG00000162434 JAK1 -398369 sc-eQTL 6.81e-02 0.166 0.0907 0.667 CD8_TEM L2
ENSG00000213625 LEPROT -751202 sc-eQTL 3.33e-02 0.2 0.0931 0.667 CD8_TEM L2
ENSG00000162434 JAK1 -398369 sc-eQTL 2.61e-01 0.0903 0.0801 0.658 MAIT L2
ENSG00000162437 RAVER2 -75710 sc-eQTL 3.83e-01 -0.0747 0.0854 0.658 MAIT L2
ENSG00000213625 LEPROT -751202 sc-eQTL 7.76e-01 0.0263 0.0925 0.658 MAIT L2
ENSG00000116678 LEPR -751267 sc-eQTL 5.69e-01 0.049 0.0858 0.669 NK_CD56bright L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.74e-01 0.0421 0.0588 0.669 NK_CD56bright L2
ENSG00000213625 LEPROT -751202 sc-eQTL 4.88e-01 -0.067 0.0965 0.669 NK_CD56bright L2
ENSG00000116678 LEPR -751267 sc-eQTL 4.85e-01 -0.0639 0.0914 0.664 NK_CD56dim L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.95e-01 0.0326 0.0478 0.664 NK_CD56dim L2
ENSG00000213625 LEPROT -751202 sc-eQTL 2.06e-01 -0.122 0.0964 0.664 NK_CD56dim L2
ENSG00000116678 LEPR -751267 sc-eQTL 9.36e-01 0.0066 0.0821 0.669 NK_HLA L2
ENSG00000162434 JAK1 -398369 sc-eQTL 8.37e-01 -0.0132 0.0639 0.669 NK_HLA L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.93e-01 0.129 0.0987 0.669 NK_HLA L2
ENSG00000116678 LEPR -751267 sc-eQTL 6.03e-01 0.0465 0.0893 0.664 NK_cytokine L2
ENSG00000162434 JAK1 -398369 sc-eQTL 5.47e-01 0.0314 0.052 0.664 NK_cytokine L2
ENSG00000213625 LEPROT -751202 sc-eQTL 8.45e-01 -0.0185 0.0946 0.664 NK_cytokine L2
ENSG00000162434 JAK1 -398369 sc-eQTL 9.55e-01 0.00462 0.081 0.67 PB L2
ENSG00000213625 LEPROT -751202 sc-eQTL 5.71e-02 0.215 0.112 0.67 PB L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.30e-01 -0.0469 0.0593 0.663 Pro_T L2
ENSG00000162437 RAVER2 -75710 sc-eQTL 7.75e-01 -0.0225 0.0783 0.663 Pro_T L2
ENSG00000213625 LEPROT -751202 sc-eQTL 4.74e-01 0.0662 0.0923 0.663 Pro_T L2
ENSG00000158966 CACHD1 199256 sc-eQTL 2.01e-01 0.089 0.0694 0.66 Treg L2
ENSG00000162434 JAK1 -398369 sc-eQTL 9.67e-01 -0.00308 0.0742 0.66 Treg L2
ENSG00000213625 LEPROT -751202 sc-eQTL 9.63e-01 0.00441 0.0962 0.66 Treg L2
ENSG00000116678 LEPR -751267 sc-eQTL 2.90e-01 0.0976 0.0919 0.656 cDC L2
ENSG00000162433 AK4 -478164 sc-eQTL 4.64e-01 -0.0597 0.0814 0.656 cDC L2
ENSG00000162434 JAK1 -398369 sc-eQTL 5.78e-01 -0.0423 0.076 0.656 cDC L2
ENSG00000162437 RAVER2 -75710 sc-eQTL 3.62e-01 -0.0763 0.0834 0.656 cDC L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.59e-01 0.131 0.0922 0.656 cDC L2
ENSG00000116678 LEPR -751267 sc-eQTL 1.77e-01 0.121 0.0895 0.66 cMono_IL1B L2
ENSG00000162433 AK4 -478164 sc-eQTL 2.10e-01 -0.104 0.0824 0.66 cMono_IL1B L2
ENSG00000162434 JAK1 -398369 sc-eQTL 9.61e-01 -0.00367 0.0752 0.66 cMono_IL1B L2
ENSG00000213625 LEPROT -751202 sc-eQTL 3.17e-01 0.0608 0.0606 0.66 cMono_IL1B L2
ENSG00000116678 LEPR -751267 sc-eQTL 6.02e-01 -0.046 0.0882 0.66 cMono_S100A L2
ENSG00000162433 AK4 -478164 sc-eQTL 3.95e-01 -0.0712 0.0835 0.66 cMono_S100A L2
ENSG00000162434 JAK1 -398369 sc-eQTL 7.36e-01 0.026 0.0772 0.66 cMono_S100A L2
ENSG00000213625 LEPROT -751202 sc-eQTL 6.11e-01 -0.0367 0.0722 0.66 cMono_S100A L2
ENSG00000162434 JAK1 -398369 sc-eQTL 4.90e-01 0.0781 0.113 0.67 gdT L2
ENSG00000162437 RAVER2 -75710 sc-eQTL 3.64e-01 0.0904 0.0993 0.67 gdT L2
ENSG00000213625 LEPROT -751202 sc-eQTL 8.94e-01 0.0159 0.119 0.67 gdT L2
ENSG00000116678 LEPR -751267 sc-eQTL 3.51e-01 -0.0812 0.0868 0.662 intMono L2
ENSG00000162433 AK4 -478164 sc-eQTL 2.23e-01 0.0998 0.0817 0.662 intMono L2
ENSG00000162434 JAK1 -398369 sc-eQTL 6.01e-01 0.0396 0.0758 0.662 intMono L2
ENSG00000213625 LEPROT -751202 sc-eQTL 1.36e-01 0.109 0.0727 0.662 intMono L2
ENSG00000116678 LEPR -751267 sc-eQTL 8.82e-01 0.0127 0.0856 0.661 ncMono L2
ENSG00000162433 AK4 -478164 sc-eQTL 2.11e-01 0.0955 0.076 0.661 ncMono L2
ENSG00000162434 JAK1 -398369 sc-eQTL 7.27e-01 0.0216 0.0617 0.661 ncMono L2
ENSG00000213625 LEPROT -751202 sc-eQTL 2.87e-02 -0.191 0.0865 0.661 ncMono L2
ENSG00000116678 LEPR -751267 sc-eQTL 4.00e-01 -0.0793 0.094 0.672 pDC L2
ENSG00000162433 AK4 -478164 sc-eQTL 8.82e-01 0.00913 0.0614 0.672 pDC L2
ENSG00000162434 JAK1 -398369 sc-eQTL 8.04e-01 -0.0204 0.082 0.672 pDC L2
ENSG00000162437 RAVER2 -75710 sc-eQTL 4.90e-01 -0.0638 0.0923 0.672 pDC L2
ENSG00000213625 LEPROT -751202 sc-eQTL 5.30e-01 -0.0639 0.102 0.672 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -398369 sc-eQTL 6.09e-01 -0.0351 0.0685 0.66 B_Memory LOneK1K
ENSG00000213625 LEPROT -751202 sc-eQTL 8.86e-01 -0.0126 0.088 0.66 B_Memory LOneK1K
ENSG00000162434 JAK1 -398369 sc-eQTL 4.07e-01 -0.0561 0.0675 0.66 B_Naive LOneK1K
ENSG00000213625 LEPROT -751202 sc-eQTL 1.17e-01 0.134 0.085 0.66 B_Naive LOneK1K
ENSG00000116678 LEPR -751267 sc-eQTL 5.66e-01 0.0503 0.0875 0.66 CD14_Mono LOneK1K
ENSG00000162433 AK4 -478164 sc-eQTL 5.31e-02 -0.161 0.083 0.66 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -398369 sc-eQTL 8.66e-01 -0.0118 0.0701 0.66 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -751202 sc-eQTL 9.47e-01 0.00393 0.0588 0.66 CD14_Mono LOneK1K
ENSG00000116678 LEPR -751267 sc-eQTL 8.20e-01 -0.0201 0.0881 0.659 CD16_Mono LOneK1K
ENSG00000162433 AK4 -478164 sc-eQTL 1.27e-01 0.122 0.0793 0.659 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -398369 sc-eQTL 2.83e-01 0.0577 0.0535 0.659 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -751202 sc-eQTL 5.07e-01 -0.0497 0.0748 0.659 CD16_Mono LOneK1K
ENSG00000116678 LEPR -751267 sc-eQTL 8.92e-01 0.0122 0.0895 0.664 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -398369 sc-eQTL 4.60e-01 0.031 0.0419 0.664 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -751202 sc-eQTL 4.28e-01 -0.0737 0.0927 0.664 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -297164 eQTL 0.042 0.0308 0.0151 0.0 0.0 0.337
ENSG00000185483 ROR1 895368 pQTL 0.0396 0.028 0.0136 0.0 0.0 0.341
ENSG00000226891 LINC01359 -333104 eQTL 0.0468 -0.0578 0.029 0.0 0.0 0.337
ENSG00000231485 AL357078.1 -398352 eQTL 0.0539 -0.078 0.0404 0.00117 0.0 0.337

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -297164 1.29e-06 3.7e-06 2.65e-07 1.96e-06 4.2e-07 6.44e-07 1.31e-06 4.95e-07 3.32e-06 1.35e-06 4.89e-06 3.37e-06 3.66e-06 2.15e-06 9.04e-07 1.19e-06 9.41e-07 1.42e-06 6.08e-07 4.51e-07 7.46e-07 2.43e-06 1.17e-06 6.81e-07 3.75e-06 7.94e-07 9.86e-07 1.44e-06 1.75e-06 1.68e-06 1.93e-06 3.72e-08 9.46e-08 9.6e-07 9.05e-07 5.32e-07 7.46e-07 1.15e-07 5e-07 2.75e-07 4.67e-08 2.62e-06 2.73e-07 8.04e-08 1.52e-07 1.71e-07 1.71e-07 7.75e-08 6.14e-08