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Genes within 1Mb (chr1:64666645:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -401109 sc-eQTL 5.86e-01 -0.0297 0.0545 0.662 B L1
ENSG00000213625 LEPROT -753942 sc-eQTL 1.69e-01 0.0957 0.0693 0.662 B L1
ENSG00000158966 CACHD1 196516 sc-eQTL 7.40e-01 -0.0167 0.0503 0.662 CD4T L1
ENSG00000162434 JAK1 -401109 sc-eQTL 7.96e-01 0.0137 0.0527 0.662 CD4T L1
ENSG00000213625 LEPROT -753942 sc-eQTL 3.29e-01 0.0805 0.0823 0.662 CD4T L1
ENSG00000116678 LEPR -754007 sc-eQTL 5.83e-01 -0.0491 0.0892 0.662 CD8T L1
ENSG00000158966 CACHD1 196516 sc-eQTL 1.86e-01 -0.0581 0.0437 0.662 CD8T L1
ENSG00000162434 JAK1 -401109 sc-eQTL 1.95e-01 0.0895 0.0689 0.662 CD8T L1
ENSG00000213625 LEPROT -753942 sc-eQTL 6.60e-01 0.0404 0.0916 0.662 CD8T L1
ENSG00000116678 LEPR -754007 sc-eQTL 4.54e-01 0.0679 0.0905 0.667 DC L1
ENSG00000162433 AK4 -480904 sc-eQTL 3.65e-01 -0.0691 0.0761 0.667 DC L1
ENSG00000162434 JAK1 -401109 sc-eQTL 1.42e-01 -0.093 0.0631 0.667 DC L1
ENSG00000162437 RAVER2 -78450 sc-eQTL 6.54e-01 -0.0365 0.0812 0.667 DC L1
ENSG00000213625 LEPROT -753942 sc-eQTL 5.27e-01 0.0569 0.0898 0.667 DC L1
ENSG00000116678 LEPR -754007 sc-eQTL 6.52e-01 0.0401 0.0888 0.662 Mono L1
ENSG00000162433 AK4 -480904 sc-eQTL 2.50e-01 -0.0935 0.081 0.662 Mono L1
ENSG00000162434 JAK1 -401109 sc-eQTL 5.17e-01 -0.0375 0.0579 0.662 Mono L1
ENSG00000213625 LEPROT -753942 sc-eQTL 9.96e-01 0.000271 0.0574 0.662 Mono L1
ENSG00000116678 LEPR -754007 sc-eQTL 7.99e-01 0.0223 0.0873 0.663 NK L1
ENSG00000162434 JAK1 -401109 sc-eQTL 3.54e-01 0.0383 0.0412 0.663 NK L1
ENSG00000213625 LEPROT -753942 sc-eQTL 4.12e-01 -0.0774 0.094 0.663 NK L1
ENSG00000162434 JAK1 -401109 sc-eQTL 6.00e-02 0.111 0.059 0.662 Other_T L1
ENSG00000162437 RAVER2 -78450 sc-eQTL 5.89e-01 -0.0467 0.0863 0.662 Other_T L1
ENSG00000213625 LEPROT -753942 sc-eQTL 3.18e-01 0.0933 0.0931 0.662 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -401109 sc-eQTL 3.43e-01 0.0898 0.0944 0.673 B_Activated L2
ENSG00000213625 LEPROT -753942 sc-eQTL 5.27e-01 -0.0627 0.0988 0.673 B_Activated L2
ENSG00000162434 JAK1 -401109 sc-eQTL 2.68e-01 -0.0861 0.0774 0.663 B_Intermediate L2
ENSG00000213625 LEPROT -753942 sc-eQTL 5.22e-01 -0.0583 0.091 0.663 B_Intermediate L2
ENSG00000162434 JAK1 -401109 sc-eQTL 6.00e-01 -0.0416 0.079 0.664 B_Memory L2
ENSG00000213625 LEPROT -753942 sc-eQTL 3.27e-01 -0.0901 0.0917 0.664 B_Memory L2
ENSG00000162434 JAK1 -401109 sc-eQTL 7.04e-01 -0.0269 0.0706 0.662 B_Naive1 L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.57e-01 0.13 0.0917 0.662 B_Naive1 L2
ENSG00000162434 JAK1 -401109 sc-eQTL 2.71e-01 -0.0824 0.0748 0.665 B_Naive2 L2
ENSG00000213625 LEPROT -753942 sc-eQTL 9.92e-01 0.000934 0.0904 0.665 B_Naive2 L2
ENSG00000158966 CACHD1 196516 sc-eQTL 1.60e-01 0.0496 0.0352 0.673 CD4_CTL L2
ENSG00000162434 JAK1 -401109 sc-eQTL 4.34e-01 0.0684 0.0871 0.673 CD4_CTL L2
ENSG00000213625 LEPROT -753942 sc-eQTL 2.09e-01 -0.126 0.0999 0.673 CD4_CTL L2
ENSG00000158966 CACHD1 196516 sc-eQTL 3.62e-01 -0.0456 0.0499 0.662 CD4_Naive L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.98e-01 0.000134 0.0511 0.662 CD4_Naive L2
ENSG00000213625 LEPROT -753942 sc-eQTL 5.91e-01 0.0445 0.0828 0.662 CD4_Naive L2
ENSG00000158966 CACHD1 196516 sc-eQTL 8.56e-01 0.013 0.0717 0.662 CD4_TCM L2
ENSG00000162434 JAK1 -401109 sc-eQTL 1.75e-01 0.0796 0.0584 0.662 CD4_TCM L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.18e-01 0.133 0.0846 0.662 CD4_TCM L2
ENSG00000158966 CACHD1 196516 sc-eQTL 8.87e-01 0.00794 0.0557 0.662 CD4_TEM L2
ENSG00000162434 JAK1 -401109 sc-eQTL 2.36e-01 0.0937 0.0789 0.662 CD4_TEM L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.23e-01 0.145 0.0935 0.662 CD4_TEM L2
ENSG00000116678 LEPR -754007 sc-eQTL 3.75e-01 -0.0774 0.0871 0.662 CD8_CTL L2
ENSG00000158966 CACHD1 196516 sc-eQTL 4.75e-01 0.0281 0.0392 0.662 CD8_CTL L2
ENSG00000162434 JAK1 -401109 sc-eQTL 4.19e-01 0.0593 0.0731 0.662 CD8_CTL L2
ENSG00000213625 LEPROT -753942 sc-eQTL 7.71e-01 0.0261 0.0895 0.662 CD8_CTL L2
ENSG00000116678 LEPR -754007 sc-eQTL 4.55e-01 -0.0653 0.0872 0.662 CD8_Naive L2
ENSG00000158966 CACHD1 196516 sc-eQTL 3.91e-01 -0.052 0.0604 0.662 CD8_Naive L2
ENSG00000162434 JAK1 -401109 sc-eQTL 6.45e-01 -0.0336 0.0728 0.662 CD8_Naive L2
ENSG00000213625 LEPROT -753942 sc-eQTL 5.58e-01 -0.0523 0.0891 0.662 CD8_Naive L2
ENSG00000116678 LEPR -754007 sc-eQTL 2.67e-01 -0.0998 0.0897 0.664 CD8_TCM L2
ENSG00000158966 CACHD1 196516 sc-eQTL 4.60e-01 -0.0359 0.0485 0.664 CD8_TCM L2
ENSG00000162434 JAK1 -401109 sc-eQTL 7.60e-01 0.0239 0.0781 0.664 CD8_TCM L2
ENSG00000213625 LEPROT -753942 sc-eQTL 7.57e-01 -0.0302 0.0975 0.664 CD8_TCM L2
ENSG00000116678 LEPR -754007 sc-eQTL 1.78e-01 0.109 0.0811 0.669 CD8_TEM L2
ENSG00000158966 CACHD1 196516 sc-eQTL 1.71e-01 -0.0267 0.0194 0.669 CD8_TEM L2
ENSG00000162434 JAK1 -401109 sc-eQTL 7.16e-02 0.165 0.0913 0.669 CD8_TEM L2
ENSG00000213625 LEPROT -753942 sc-eQTL 4.03e-02 0.194 0.0939 0.669 CD8_TEM L2
ENSG00000162434 JAK1 -401109 sc-eQTL 2.94e-01 0.0847 0.0805 0.66 MAIT L2
ENSG00000162437 RAVER2 -78450 sc-eQTL 3.27e-01 -0.0843 0.0858 0.66 MAIT L2
ENSG00000213625 LEPROT -753942 sc-eQTL 7.59e-01 0.0285 0.0929 0.66 MAIT L2
ENSG00000116678 LEPR -754007 sc-eQTL 6.21e-01 0.0427 0.0862 0.671 NK_CD56bright L2
ENSG00000162434 JAK1 -401109 sc-eQTL 5.04e-01 0.0395 0.059 0.671 NK_CD56bright L2
ENSG00000213625 LEPROT -753942 sc-eQTL 4.12e-01 -0.0797 0.0968 0.671 NK_CD56bright L2
ENSG00000116678 LEPR -754007 sc-eQTL 4.94e-01 -0.063 0.0919 0.666 NK_CD56dim L2
ENSG00000162434 JAK1 -401109 sc-eQTL 4.64e-01 0.0352 0.048 0.666 NK_CD56dim L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.48e-01 -0.141 0.0968 0.666 NK_CD56dim L2
ENSG00000116678 LEPR -754007 sc-eQTL 9.75e-01 0.00263 0.0826 0.671 NK_HLA L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.29e-01 -0.00575 0.0643 0.671 NK_HLA L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.47e-01 0.144 0.0991 0.671 NK_HLA L2
ENSG00000116678 LEPR -754007 sc-eQTL 5.68e-01 0.0512 0.0896 0.666 NK_cytokine L2
ENSG00000162434 JAK1 -401109 sc-eQTL 5.51e-01 0.0312 0.0522 0.666 NK_cytokine L2
ENSG00000213625 LEPROT -753942 sc-eQTL 8.48e-01 -0.0182 0.0949 0.666 NK_cytokine L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.55e-01 0.00462 0.081 0.67 PB L2
ENSG00000213625 LEPROT -753942 sc-eQTL 5.71e-02 0.215 0.112 0.67 PB L2
ENSG00000162434 JAK1 -401109 sc-eQTL 3.69e-01 -0.0534 0.0594 0.665 Pro_T L2
ENSG00000162437 RAVER2 -78450 sc-eQTL 6.98e-01 -0.0305 0.0785 0.665 Pro_T L2
ENSG00000213625 LEPROT -753942 sc-eQTL 4.59e-01 0.0686 0.0925 0.665 Pro_T L2
ENSG00000158966 CACHD1 196516 sc-eQTL 1.93e-01 0.0909 0.0696 0.662 Treg L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.52e-01 -0.00445 0.0745 0.662 Treg L2
ENSG00000213625 LEPROT -753942 sc-eQTL 9.26e-01 0.00897 0.0966 0.662 Treg L2
ENSG00000116678 LEPR -754007 sc-eQTL 3.44e-01 0.088 0.0927 0.659 cDC L2
ENSG00000162433 AK4 -480904 sc-eQTL 5.78e-01 -0.0457 0.0821 0.659 cDC L2
ENSG00000162434 JAK1 -401109 sc-eQTL 5.94e-01 -0.0409 0.0766 0.659 cDC L2
ENSG00000162437 RAVER2 -78450 sc-eQTL 3.16e-01 -0.0845 0.084 0.659 cDC L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.35e-01 0.139 0.0929 0.659 cDC L2
ENSG00000116678 LEPR -754007 sc-eQTL 1.90e-01 0.118 0.0899 0.662 cMono_IL1B L2
ENSG00000162433 AK4 -480904 sc-eQTL 2.30e-01 -0.0997 0.0828 0.662 cMono_IL1B L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.96e-01 -0.000382 0.0756 0.662 cMono_IL1B L2
ENSG00000213625 LEPROT -753942 sc-eQTL 2.28e-01 0.0736 0.0609 0.662 cMono_IL1B L2
ENSG00000116678 LEPR -754007 sc-eQTL 6.45e-01 -0.0409 0.0886 0.662 cMono_S100A L2
ENSG00000162433 AK4 -480904 sc-eQTL 5.17e-01 -0.0545 0.084 0.662 cMono_S100A L2
ENSG00000162434 JAK1 -401109 sc-eQTL 9.37e-01 0.0061 0.0776 0.662 cMono_S100A L2
ENSG00000213625 LEPROT -753942 sc-eQTL 4.54e-01 -0.0543 0.0725 0.662 cMono_S100A L2
ENSG00000162434 JAK1 -401109 sc-eQTL 5.20e-01 0.0729 0.113 0.673 gdT L2
ENSG00000162437 RAVER2 -78450 sc-eQTL 3.29e-01 0.0974 0.0994 0.673 gdT L2
ENSG00000213625 LEPROT -753942 sc-eQTL 8.86e-01 0.0172 0.119 0.673 gdT L2
ENSG00000116678 LEPR -754007 sc-eQTL 3.19e-01 -0.0869 0.0869 0.664 intMono L2
ENSG00000162433 AK4 -480904 sc-eQTL 2.56e-01 0.0933 0.0818 0.664 intMono L2
ENSG00000162434 JAK1 -401109 sc-eQTL 6.63e-01 0.0331 0.0759 0.664 intMono L2
ENSG00000213625 LEPROT -753942 sc-eQTL 1.90e-01 0.0957 0.0729 0.664 intMono L2
ENSG00000116678 LEPR -754007 sc-eQTL 1.00e+00 3.28e-06 0.086 0.663 ncMono L2
ENSG00000162433 AK4 -480904 sc-eQTL 2.36e-01 0.0908 0.0764 0.663 ncMono L2
ENSG00000162434 JAK1 -401109 sc-eQTL 6.47e-01 0.0284 0.062 0.663 ncMono L2
ENSG00000213625 LEPROT -753942 sc-eQTL 4.87e-02 -0.173 0.0871 0.663 ncMono L2
ENSG00000116678 LEPR -754007 sc-eQTL 3.74e-01 -0.0842 0.0944 0.675 pDC L2
ENSG00000162433 AK4 -480904 sc-eQTL 9.01e-01 0.0077 0.0617 0.675 pDC L2
ENSG00000162434 JAK1 -401109 sc-eQTL 7.27e-01 -0.0289 0.0824 0.675 pDC L2
ENSG00000162437 RAVER2 -78450 sc-eQTL 5.67e-01 -0.0533 0.0928 0.675 pDC L2
ENSG00000213625 LEPROT -753942 sc-eQTL 6.01e-01 -0.0536 0.102 0.675 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -401109 sc-eQTL 6.13e-01 -0.0348 0.0688 0.662 B_Memory LOneK1K
ENSG00000213625 LEPROT -753942 sc-eQTL 7.46e-01 -0.0287 0.0884 0.662 B_Memory LOneK1K
ENSG00000162434 JAK1 -401109 sc-eQTL 4.98e-01 -0.0462 0.068 0.662 B_Naive LOneK1K
ENSG00000213625 LEPROT -753942 sc-eQTL 1.19e-01 0.134 0.0855 0.662 B_Naive LOneK1K
ENSG00000116678 LEPR -754007 sc-eQTL 5.61e-01 0.0512 0.0878 0.662 CD14_Mono LOneK1K
ENSG00000162433 AK4 -480904 sc-eQTL 7.08e-02 -0.152 0.0834 0.662 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -401109 sc-eQTL 8.13e-01 -0.0166 0.0704 0.662 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -753942 sc-eQTL 9.36e-01 0.00472 0.059 0.662 CD14_Mono LOneK1K
ENSG00000116678 LEPR -754007 sc-eQTL 7.25e-01 -0.0311 0.0883 0.662 CD16_Mono LOneK1K
ENSG00000162433 AK4 -480904 sc-eQTL 1.44e-01 0.117 0.0795 0.662 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -401109 sc-eQTL 2.92e-01 0.0567 0.0536 0.662 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -753942 sc-eQTL 5.99e-01 -0.0395 0.0749 0.662 CD16_Mono LOneK1K
ENSG00000116678 LEPR -754007 sc-eQTL 8.89e-01 0.0126 0.09 0.666 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -401109 sc-eQTL 4.38e-01 0.0327 0.0421 0.666 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -753942 sc-eQTL 3.74e-01 -0.0831 0.0932 0.666 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -299904 eQTL 0.0293 0.033 0.0151 0.0 0.0 0.338
ENSG00000185483 ROR1 892628 pQTL 0.0372 0.0283 0.0136 0.0 0.0 0.342
ENSG00000226891 LINC01359 -335844 eQTL 0.0436 -0.0586 0.029 0.0 0.0 0.338
ENSG00000231485 AL357078.1 -401092 eQTL 0.054 -0.078 0.0404 0.00117 0.0 0.338

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -299904 1.64e-06 2.09e-06 2.32e-07 1.53e-06 4.78e-07 6.96e-07 1.22e-06 4.77e-07 1.78e-06 7.98e-07 1.81e-06 1.29e-06 2.68e-06 6.9e-07 4.59e-07 1.06e-06 1.13e-06 1.35e-06 5.3e-07 7.99e-07 7.87e-07 1.93e-06 1.61e-06 9.69e-07 2.57e-06 1.12e-06 1.19e-06 1.35e-06 1.73e-06 1.39e-06 7.53e-07 3.22e-07 4e-07 7.25e-07 9.21e-07 5.92e-07 7.44e-07 4.1e-07 6.98e-07 3.33e-07 1.51e-07 2.11e-06 4.26e-07 1.9e-07 3.42e-07 3.21e-07 4.63e-07 2.2e-07 2.14e-07