logo

Genes within 1Mb (chr1:64662712:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -405042 sc-eQTL 9.46e-01 -0.0038 0.0558 0.6 B L1
ENSG00000213625 LEPROT -757875 sc-eQTL 4.57e-01 0.0531 0.0712 0.6 B L1
ENSG00000158966 CACHD1 192583 sc-eQTL 8.98e-01 0.00666 0.0521 0.6 CD4T L1
ENSG00000162434 JAK1 -405042 sc-eQTL 1.68e-01 0.0751 0.0544 0.6 CD4T L1
ENSG00000213625 LEPROT -757875 sc-eQTL 9.52e-01 -0.00519 0.0854 0.6 CD4T L1
ENSG00000116678 LEPR -757940 sc-eQTL 2.04e-01 -0.117 0.0916 0.6 CD8T L1
ENSG00000158966 CACHD1 192583 sc-eQTL 5.41e-01 -0.0277 0.0452 0.6 CD8T L1
ENSG00000162434 JAK1 -405042 sc-eQTL 5.73e-03 0.196 0.07 0.6 CD8T L1
ENSG00000213625 LEPROT -757875 sc-eQTL 9.79e-01 0.0025 0.0945 0.6 CD8T L1
ENSG00000116678 LEPR -757940 sc-eQTL 3.41e-01 0.089 0.0932 0.608 DC L1
ENSG00000162433 AK4 -484837 sc-eQTL 5.01e-01 -0.0529 0.0785 0.608 DC L1
ENSG00000162434 JAK1 -405042 sc-eQTL 6.36e-01 -0.0309 0.0653 0.608 DC L1
ENSG00000162437 RAVER2 -82383 sc-eQTL 2.98e-01 -0.0871 0.0835 0.608 DC L1
ENSG00000213625 LEPROT -757875 sc-eQTL 9.79e-01 0.00247 0.0927 0.608 DC L1
ENSG00000116678 LEPR -757940 sc-eQTL 8.88e-01 0.013 0.0919 0.6 Mono L1
ENSG00000162433 AK4 -484837 sc-eQTL 2.23e-01 -0.102 0.0838 0.6 Mono L1
ENSG00000162434 JAK1 -405042 sc-eQTL 9.24e-01 -0.00574 0.06 0.6 Mono L1
ENSG00000213625 LEPROT -757875 sc-eQTL 5.74e-01 -0.0334 0.0593 0.6 Mono L1
ENSG00000116678 LEPR -757940 sc-eQTL 3.37e-01 0.0858 0.0892 0.601 NK L1
ENSG00000162434 JAK1 -405042 sc-eQTL 1.78e-01 0.0568 0.042 0.601 NK L1
ENSG00000213625 LEPROT -757875 sc-eQTL 3.35e-01 -0.0928 0.0961 0.601 NK L1
ENSG00000162434 JAK1 -405042 sc-eQTL 5.56e-03 0.166 0.0592 0.6 Other_T L1
ENSG00000162437 RAVER2 -82383 sc-eQTL 6.87e-01 -0.0353 0.0876 0.6 Other_T L1
ENSG00000213625 LEPROT -757875 sc-eQTL 3.06e-01 0.0969 0.0945 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -405042 sc-eQTL 2.15e-01 0.12 0.0965 0.61 B_Activated L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.14e-01 -0.126 0.101 0.61 B_Activated L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.42e-01 -0.0753 0.079 0.601 B_Intermediate L2
ENSG00000213625 LEPROT -757875 sc-eQTL 6.37e-01 -0.0438 0.0928 0.601 B_Intermediate L2
ENSG00000162434 JAK1 -405042 sc-eQTL 5.57e-01 -0.0474 0.0805 0.601 B_Memory L2
ENSG00000213625 LEPROT -757875 sc-eQTL 5.43e-01 -0.0571 0.0936 0.601 B_Memory L2
ENSG00000162434 JAK1 -405042 sc-eQTL 6.84e-01 0.0296 0.0727 0.6 B_Naive1 L2
ENSG00000213625 LEPROT -757875 sc-eQTL 4.04e-01 0.0791 0.0947 0.6 B_Naive1 L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.44e-01 -0.0728 0.0767 0.603 B_Naive2 L2
ENSG00000213625 LEPROT -757875 sc-eQTL 7.73e-01 -0.0268 0.0926 0.603 B_Naive2 L2
ENSG00000158966 CACHD1 192583 sc-eQTL 4.24e-01 0.0286 0.0358 0.611 CD4_CTL L2
ENSG00000162434 JAK1 -405042 sc-eQTL 6.00e-01 0.0464 0.0883 0.611 CD4_CTL L2
ENSG00000213625 LEPROT -757875 sc-eQTL 5.83e-01 -0.0558 0.101 0.611 CD4_CTL L2
ENSG00000158966 CACHD1 192583 sc-eQTL 5.64e-01 -0.0298 0.0515 0.6 CD4_Naive L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.24e-01 0.0519 0.0525 0.6 CD4_Naive L2
ENSG00000213625 LEPROT -757875 sc-eQTL 7.18e-01 -0.0309 0.0853 0.6 CD4_Naive L2
ENSG00000158966 CACHD1 192583 sc-eQTL 2.65e-01 0.082 0.0734 0.6 CD4_TCM L2
ENSG00000162434 JAK1 -405042 sc-eQTL 1.83e-02 0.141 0.0595 0.6 CD4_TCM L2
ENSG00000213625 LEPROT -757875 sc-eQTL 5.51e-01 0.0521 0.0873 0.6 CD4_TCM L2
ENSG00000158966 CACHD1 192583 sc-eQTL 5.70e-01 0.0322 0.0566 0.6 CD4_TEM L2
ENSG00000162434 JAK1 -405042 sc-eQTL 7.62e-02 0.143 0.08 0.6 CD4_TEM L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.73e-01 0.105 0.0954 0.6 CD4_TEM L2
ENSG00000116678 LEPR -757940 sc-eQTL 5.12e-01 -0.0592 0.0902 0.6 CD8_CTL L2
ENSG00000158966 CACHD1 192583 sc-eQTL 6.97e-01 0.0158 0.0406 0.6 CD8_CTL L2
ENSG00000162434 JAK1 -405042 sc-eQTL 1.61e-02 0.181 0.0748 0.6 CD8_CTL L2
ENSG00000213625 LEPROT -757875 sc-eQTL 4.74e-01 -0.0663 0.0925 0.6 CD8_CTL L2
ENSG00000116678 LEPR -757940 sc-eQTL 8.55e-02 -0.153 0.0884 0.6 CD8_Naive L2
ENSG00000158966 CACHD1 192583 sc-eQTL 9.52e-01 -0.00375 0.0617 0.6 CD8_Naive L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.80e-01 0.0801 0.074 0.6 CD8_Naive L2
ENSG00000213625 LEPROT -757875 sc-eQTL 7.81e-01 -0.0253 0.0909 0.6 CD8_Naive L2
ENSG00000116678 LEPR -757940 sc-eQTL 2.29e-01 -0.108 0.0898 0.604 CD8_TCM L2
ENSG00000158966 CACHD1 192583 sc-eQTL 4.72e-01 -0.0351 0.0486 0.604 CD8_TCM L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.52e-01 0.0729 0.0781 0.604 CD8_TCM L2
ENSG00000213625 LEPROT -757875 sc-eQTL 5.76e-01 -0.0547 0.0976 0.604 CD8_TCM L2
ENSG00000116678 LEPR -757940 sc-eQTL 4.78e-01 0.0588 0.0828 0.603 CD8_TEM L2
ENSG00000158966 CACHD1 192583 sc-eQTL 1.48e-01 -0.0286 0.0197 0.603 CD8_TEM L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.38e-01 0.111 0.0935 0.603 CD8_TEM L2
ENSG00000213625 LEPROT -757875 sc-eQTL 3.19e-02 0.206 0.0955 0.603 CD8_TEM L2
ENSG00000162434 JAK1 -405042 sc-eQTL 1.23e-01 0.126 0.0813 0.597 MAIT L2
ENSG00000162437 RAVER2 -82383 sc-eQTL 2.01e-01 -0.111 0.0868 0.597 MAIT L2
ENSG00000213625 LEPROT -757875 sc-eQTL 9.67e-01 -0.00389 0.0942 0.597 MAIT L2
ENSG00000116678 LEPR -757940 sc-eQTL 6.10e-01 0.0449 0.0878 0.607 NK_CD56bright L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.90e-01 0.0517 0.0601 0.607 NK_CD56bright L2
ENSG00000213625 LEPROT -757875 sc-eQTL 3.78e-01 -0.0872 0.0987 0.607 NK_CD56bright L2
ENSG00000116678 LEPR -757940 sc-eQTL 9.67e-01 0.00393 0.094 0.603 NK_CD56dim L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.64e-01 0.0548 0.0489 0.603 NK_CD56dim L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.27e-01 -0.12 0.099 0.603 NK_CD56dim L2
ENSG00000116678 LEPR -757940 sc-eQTL 7.34e-01 -0.029 0.0852 0.607 NK_HLA L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.93e-01 0.0697 0.0661 0.607 NK_HLA L2
ENSG00000213625 LEPROT -757875 sc-eQTL 3.70e-01 0.0922 0.103 0.607 NK_HLA L2
ENSG00000116678 LEPR -757940 sc-eQTL 3.01e-01 0.0947 0.0914 0.603 NK_cytokine L2
ENSG00000162434 JAK1 -405042 sc-eQTL 1.26e-01 0.0815 0.053 0.603 NK_cytokine L2
ENSG00000213625 LEPROT -757875 sc-eQTL 7.73e-01 -0.028 0.0969 0.603 NK_cytokine L2
ENSG00000162434 JAK1 -405042 sc-eQTL 9.17e-01 -0.00876 0.0841 0.604 PB L2
ENSG00000213625 LEPROT -757875 sc-eQTL 1.28e-01 0.179 0.117 0.604 PB L2
ENSG00000162434 JAK1 -405042 sc-eQTL 4.96e-01 -0.042 0.0615 0.602 Pro_T L2
ENSG00000162437 RAVER2 -82383 sc-eQTL 5.53e-01 -0.0482 0.0812 0.602 Pro_T L2
ENSG00000213625 LEPROT -757875 sc-eQTL 1.49e-01 0.138 0.0954 0.602 Pro_T L2
ENSG00000158966 CACHD1 192583 sc-eQTL 2.90e-01 0.0753 0.0709 0.6 Treg L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.99e-01 0.0786 0.0756 0.6 Treg L2
ENSG00000213625 LEPROT -757875 sc-eQTL 9.94e-01 0.00077 0.0982 0.6 Treg L2
ENSG00000116678 LEPR -757940 sc-eQTL 1.92e-01 0.125 0.0957 0.6 cDC L2
ENSG00000162433 AK4 -484837 sc-eQTL 6.88e-01 -0.0341 0.0849 0.6 cDC L2
ENSG00000162434 JAK1 -405042 sc-eQTL 5.28e-01 0.05 0.0792 0.6 cDC L2
ENSG00000162437 RAVER2 -82383 sc-eQTL 3.41e-01 -0.0829 0.0869 0.6 cDC L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.56e-01 0.11 0.0963 0.6 cDC L2
ENSG00000116678 LEPR -757940 sc-eQTL 2.26e-01 0.112 0.0921 0.6 cMono_IL1B L2
ENSG00000162433 AK4 -484837 sc-eQTL 1.98e-01 -0.109 0.0847 0.6 cMono_IL1B L2
ENSG00000162434 JAK1 -405042 sc-eQTL 8.75e-01 0.0122 0.0773 0.6 cMono_IL1B L2
ENSG00000213625 LEPROT -757875 sc-eQTL 3.40e-01 0.0596 0.0623 0.6 cMono_IL1B L2
ENSG00000116678 LEPR -757940 sc-eQTL 5.69e-01 -0.0516 0.0905 0.6 cMono_S100A L2
ENSG00000162433 AK4 -484837 sc-eQTL 2.08e-01 -0.108 0.0856 0.6 cMono_S100A L2
ENSG00000162434 JAK1 -405042 sc-eQTL 5.39e-01 0.0487 0.0792 0.6 cMono_S100A L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.80e-01 -0.0801 0.074 0.6 cMono_S100A L2
ENSG00000162434 JAK1 -405042 sc-eQTL 2.87e-01 0.121 0.114 0.609 gdT L2
ENSG00000162437 RAVER2 -82383 sc-eQTL 3.27e-01 0.0985 0.1 0.609 gdT L2
ENSG00000213625 LEPROT -757875 sc-eQTL 9.49e-01 -0.00765 0.12 0.609 gdT L2
ENSG00000116678 LEPR -757940 sc-eQTL 2.38e-01 -0.106 0.0895 0.604 intMono L2
ENSG00000162433 AK4 -484837 sc-eQTL 1.40e-01 0.125 0.0841 0.604 intMono L2
ENSG00000162434 JAK1 -405042 sc-eQTL 3.80e-01 0.0686 0.078 0.604 intMono L2
ENSG00000213625 LEPROT -757875 sc-eQTL 7.18e-01 0.0272 0.0753 0.604 intMono L2
ENSG00000116678 LEPR -757940 sc-eQTL 9.28e-01 0.00804 0.0889 0.602 ncMono L2
ENSG00000162433 AK4 -484837 sc-eQTL 4.15e-01 0.0646 0.0792 0.602 ncMono L2
ENSG00000162434 JAK1 -405042 sc-eQTL 5.44e-01 0.039 0.0641 0.602 ncMono L2
ENSG00000213625 LEPROT -757875 sc-eQTL 6.50e-02 -0.167 0.0902 0.602 ncMono L2
ENSG00000116678 LEPR -757940 sc-eQTL 5.45e-01 -0.0582 0.0961 0.616 pDC L2
ENSG00000162433 AK4 -484837 sc-eQTL 5.74e-01 -0.0353 0.0626 0.616 pDC L2
ENSG00000162434 JAK1 -405042 sc-eQTL 6.54e-01 -0.0376 0.0837 0.616 pDC L2
ENSG00000162437 RAVER2 -82383 sc-eQTL 1.67e-01 -0.13 0.0938 0.616 pDC L2
ENSG00000213625 LEPROT -757875 sc-eQTL 2.70e-01 -0.115 0.103 0.616 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -405042 sc-eQTL 3.63e-01 -0.0642 0.0704 0.6 B_Memory LOneK1K
ENSG00000213625 LEPROT -757875 sc-eQTL 7.23e-01 -0.0321 0.0905 0.6 B_Memory LOneK1K
ENSG00000162434 JAK1 -405042 sc-eQTL 8.92e-01 0.00953 0.0698 0.6 B_Naive LOneK1K
ENSG00000213625 LEPROT -757875 sc-eQTL 3.41e-01 0.084 0.0881 0.6 B_Naive LOneK1K
ENSG00000116678 LEPR -757940 sc-eQTL 6.77e-01 0.0378 0.0906 0.6 CD14_Mono LOneK1K
ENSG00000162433 AK4 -484837 sc-eQTL 6.28e-02 -0.161 0.086 0.6 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -405042 sc-eQTL 8.31e-01 0.0155 0.0726 0.6 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -757875 sc-eQTL 8.69e-01 -0.01 0.0608 0.6 CD14_Mono LOneK1K
ENSG00000116678 LEPR -757940 sc-eQTL 5.16e-01 -0.0585 0.0901 0.601 CD16_Mono LOneK1K
ENSG00000162433 AK4 -484837 sc-eQTL 1.43e-01 0.119 0.0812 0.601 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -405042 sc-eQTL 1.92e-01 0.0716 0.0547 0.601 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -757875 sc-eQTL 1.75e-01 -0.104 0.0762 0.601 CD16_Mono LOneK1K
ENSG00000116678 LEPR -757940 sc-eQTL 3.55e-01 0.0852 0.0918 0.603 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -405042 sc-eQTL 2.10e-01 0.054 0.043 0.603 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -757875 sc-eQTL 3.45e-01 -0.0901 0.0952 0.603 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000231485 AL357078.1 -405025 eQTL 0.0385 -0.0805 0.0389 0.00143 0.0 0.42

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 \N -303837 1.31e-06 9.73e-07 3.08e-07 9.2e-07 3.83e-07 4.7e-07 1.63e-06 3.95e-07 1.4e-06 5.06e-07 1.79e-06 7.32e-07 2.15e-06 3e-07 5.5e-07 9.57e-07 8.42e-07 7.21e-07 8.35e-07 6.56e-07 7.68e-07 1.63e-06 8.66e-07 5.54e-07 2.26e-06 6.95e-07 9.13e-07 8.37e-07 1.47e-06 1.29e-06 6.63e-07 2.05e-07 2.62e-07 6.58e-07 5.82e-07 4.45e-07 6.22e-07 1.66e-07 4.94e-07 2.98e-07 2.58e-07 1.56e-06 5.85e-08 4.19e-08 2.83e-07 1.23e-07 2.21e-07 8.31e-08 1.6e-07