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Genes within 1Mb (chr1:64651151:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -416603 sc-eQTL 9.46e-01 0.0038 0.0558 0.4 B L1
ENSG00000213625 LEPROT -769436 sc-eQTL 4.57e-01 -0.0531 0.0712 0.4 B L1
ENSG00000158966 CACHD1 181022 sc-eQTL 8.98e-01 -0.00666 0.0521 0.4 CD4T L1
ENSG00000162434 JAK1 -416603 sc-eQTL 1.68e-01 -0.0751 0.0544 0.4 CD4T L1
ENSG00000213625 LEPROT -769436 sc-eQTL 9.52e-01 0.00519 0.0854 0.4 CD4T L1
ENSG00000116678 LEPR -769501 sc-eQTL 2.04e-01 0.117 0.0916 0.4 CD8T L1
ENSG00000158966 CACHD1 181022 sc-eQTL 5.41e-01 0.0277 0.0452 0.4 CD8T L1
ENSG00000162434 JAK1 -416603 sc-eQTL 5.73e-03 -0.196 0.07 0.4 CD8T L1
ENSG00000213625 LEPROT -769436 sc-eQTL 9.79e-01 -0.0025 0.0945 0.4 CD8T L1
ENSG00000116678 LEPR -769501 sc-eQTL 3.41e-01 -0.089 0.0932 0.392 DC L1
ENSG00000162433 AK4 -496398 sc-eQTL 5.01e-01 0.0529 0.0785 0.392 DC L1
ENSG00000162434 JAK1 -416603 sc-eQTL 6.36e-01 0.0309 0.0653 0.392 DC L1
ENSG00000162437 RAVER2 -93944 sc-eQTL 2.98e-01 0.0871 0.0835 0.392 DC L1
ENSG00000213625 LEPROT -769436 sc-eQTL 9.79e-01 -0.00247 0.0927 0.392 DC L1
ENSG00000116678 LEPR -769501 sc-eQTL 8.88e-01 -0.013 0.0919 0.4 Mono L1
ENSG00000162433 AK4 -496398 sc-eQTL 2.23e-01 0.102 0.0838 0.4 Mono L1
ENSG00000162434 JAK1 -416603 sc-eQTL 9.24e-01 0.00574 0.06 0.4 Mono L1
ENSG00000213625 LEPROT -769436 sc-eQTL 5.74e-01 0.0334 0.0593 0.4 Mono L1
ENSG00000116678 LEPR -769501 sc-eQTL 3.37e-01 -0.0858 0.0892 0.399 NK L1
ENSG00000162434 JAK1 -416603 sc-eQTL 1.78e-01 -0.0568 0.042 0.399 NK L1
ENSG00000213625 LEPROT -769436 sc-eQTL 3.35e-01 0.0928 0.0961 0.399 NK L1
ENSG00000162434 JAK1 -416603 sc-eQTL 5.56e-03 -0.166 0.0592 0.4 Other_T L1
ENSG00000162437 RAVER2 -93944 sc-eQTL 6.87e-01 0.0353 0.0876 0.4 Other_T L1
ENSG00000213625 LEPROT -769436 sc-eQTL 3.06e-01 -0.0969 0.0945 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -416603 sc-eQTL 2.15e-01 -0.12 0.0965 0.39 B_Activated L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.14e-01 0.126 0.101 0.39 B_Activated L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.42e-01 0.0753 0.079 0.399 B_Intermediate L2
ENSG00000213625 LEPROT -769436 sc-eQTL 6.37e-01 0.0438 0.0928 0.399 B_Intermediate L2
ENSG00000162434 JAK1 -416603 sc-eQTL 5.57e-01 0.0474 0.0805 0.399 B_Memory L2
ENSG00000213625 LEPROT -769436 sc-eQTL 5.43e-01 0.0571 0.0936 0.399 B_Memory L2
ENSG00000162434 JAK1 -416603 sc-eQTL 6.84e-01 -0.0296 0.0727 0.4 B_Naive1 L2
ENSG00000213625 LEPROT -769436 sc-eQTL 4.04e-01 -0.0791 0.0947 0.4 B_Naive1 L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.44e-01 0.0728 0.0767 0.397 B_Naive2 L2
ENSG00000213625 LEPROT -769436 sc-eQTL 7.73e-01 0.0268 0.0926 0.397 B_Naive2 L2
ENSG00000158966 CACHD1 181022 sc-eQTL 4.24e-01 -0.0286 0.0358 0.389 CD4_CTL L2
ENSG00000162434 JAK1 -416603 sc-eQTL 6.00e-01 -0.0464 0.0883 0.389 CD4_CTL L2
ENSG00000213625 LEPROT -769436 sc-eQTL 5.83e-01 0.0558 0.101 0.389 CD4_CTL L2
ENSG00000158966 CACHD1 181022 sc-eQTL 5.64e-01 0.0298 0.0515 0.4 CD4_Naive L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.24e-01 -0.0519 0.0525 0.4 CD4_Naive L2
ENSG00000213625 LEPROT -769436 sc-eQTL 7.18e-01 0.0309 0.0853 0.4 CD4_Naive L2
ENSG00000158966 CACHD1 181022 sc-eQTL 2.65e-01 -0.082 0.0734 0.4 CD4_TCM L2
ENSG00000162434 JAK1 -416603 sc-eQTL 1.83e-02 -0.141 0.0595 0.4 CD4_TCM L2
ENSG00000213625 LEPROT -769436 sc-eQTL 5.51e-01 -0.0521 0.0873 0.4 CD4_TCM L2
ENSG00000158966 CACHD1 181022 sc-eQTL 5.70e-01 -0.0322 0.0566 0.4 CD4_TEM L2
ENSG00000162434 JAK1 -416603 sc-eQTL 7.62e-02 -0.143 0.08 0.4 CD4_TEM L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.73e-01 -0.105 0.0954 0.4 CD4_TEM L2
ENSG00000116678 LEPR -769501 sc-eQTL 5.12e-01 0.0592 0.0902 0.4 CD8_CTL L2
ENSG00000158966 CACHD1 181022 sc-eQTL 6.97e-01 -0.0158 0.0406 0.4 CD8_CTL L2
ENSG00000162434 JAK1 -416603 sc-eQTL 1.61e-02 -0.181 0.0748 0.4 CD8_CTL L2
ENSG00000213625 LEPROT -769436 sc-eQTL 4.74e-01 0.0663 0.0925 0.4 CD8_CTL L2
ENSG00000116678 LEPR -769501 sc-eQTL 8.55e-02 0.153 0.0884 0.4 CD8_Naive L2
ENSG00000158966 CACHD1 181022 sc-eQTL 9.52e-01 0.00375 0.0617 0.4 CD8_Naive L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.80e-01 -0.0801 0.074 0.4 CD8_Naive L2
ENSG00000213625 LEPROT -769436 sc-eQTL 7.81e-01 0.0253 0.0909 0.4 CD8_Naive L2
ENSG00000116678 LEPR -769501 sc-eQTL 2.29e-01 0.108 0.0898 0.396 CD8_TCM L2
ENSG00000158966 CACHD1 181022 sc-eQTL 4.72e-01 0.0351 0.0486 0.396 CD8_TCM L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.52e-01 -0.0729 0.0781 0.396 CD8_TCM L2
ENSG00000213625 LEPROT -769436 sc-eQTL 5.76e-01 0.0547 0.0976 0.396 CD8_TCM L2
ENSG00000116678 LEPR -769501 sc-eQTL 4.78e-01 -0.0588 0.0828 0.397 CD8_TEM L2
ENSG00000158966 CACHD1 181022 sc-eQTL 1.48e-01 0.0286 0.0197 0.397 CD8_TEM L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.38e-01 -0.111 0.0935 0.397 CD8_TEM L2
ENSG00000213625 LEPROT -769436 sc-eQTL 3.19e-02 -0.206 0.0955 0.397 CD8_TEM L2
ENSG00000162434 JAK1 -416603 sc-eQTL 1.23e-01 -0.126 0.0813 0.403 MAIT L2
ENSG00000162437 RAVER2 -93944 sc-eQTL 2.01e-01 0.111 0.0868 0.403 MAIT L2
ENSG00000213625 LEPROT -769436 sc-eQTL 9.67e-01 0.00389 0.0942 0.403 MAIT L2
ENSG00000116678 LEPR -769501 sc-eQTL 6.10e-01 -0.0449 0.0878 0.393 NK_CD56bright L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.90e-01 -0.0517 0.0601 0.393 NK_CD56bright L2
ENSG00000213625 LEPROT -769436 sc-eQTL 3.78e-01 0.0872 0.0987 0.393 NK_CD56bright L2
ENSG00000116678 LEPR -769501 sc-eQTL 9.67e-01 -0.00393 0.094 0.397 NK_CD56dim L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.64e-01 -0.0548 0.0489 0.397 NK_CD56dim L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.27e-01 0.12 0.099 0.397 NK_CD56dim L2
ENSG00000116678 LEPR -769501 sc-eQTL 7.34e-01 0.029 0.0852 0.393 NK_HLA L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.93e-01 -0.0697 0.0661 0.393 NK_HLA L2
ENSG00000213625 LEPROT -769436 sc-eQTL 3.70e-01 -0.0922 0.103 0.393 NK_HLA L2
ENSG00000116678 LEPR -769501 sc-eQTL 3.01e-01 -0.0947 0.0914 0.397 NK_cytokine L2
ENSG00000162434 JAK1 -416603 sc-eQTL 1.26e-01 -0.0815 0.053 0.397 NK_cytokine L2
ENSG00000213625 LEPROT -769436 sc-eQTL 7.73e-01 0.028 0.0969 0.397 NK_cytokine L2
ENSG00000162434 JAK1 -416603 sc-eQTL 9.17e-01 0.00876 0.0841 0.396 PB L2
ENSG00000213625 LEPROT -769436 sc-eQTL 1.28e-01 -0.179 0.117 0.396 PB L2
ENSG00000162434 JAK1 -416603 sc-eQTL 4.96e-01 0.042 0.0615 0.398 Pro_T L2
ENSG00000162437 RAVER2 -93944 sc-eQTL 5.53e-01 0.0482 0.0812 0.398 Pro_T L2
ENSG00000213625 LEPROT -769436 sc-eQTL 1.49e-01 -0.138 0.0954 0.398 Pro_T L2
ENSG00000158966 CACHD1 181022 sc-eQTL 2.90e-01 -0.0753 0.0709 0.4 Treg L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.99e-01 -0.0786 0.0756 0.4 Treg L2
ENSG00000213625 LEPROT -769436 sc-eQTL 9.94e-01 -0.00077 0.0982 0.4 Treg L2
ENSG00000116678 LEPR -769501 sc-eQTL 1.92e-01 -0.125 0.0957 0.4 cDC L2
ENSG00000162433 AK4 -496398 sc-eQTL 6.88e-01 0.0341 0.0849 0.4 cDC L2
ENSG00000162434 JAK1 -416603 sc-eQTL 5.28e-01 -0.05 0.0792 0.4 cDC L2
ENSG00000162437 RAVER2 -93944 sc-eQTL 3.41e-01 0.0829 0.0869 0.4 cDC L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.56e-01 -0.11 0.0963 0.4 cDC L2
ENSG00000116678 LEPR -769501 sc-eQTL 2.26e-01 -0.112 0.0921 0.4 cMono_IL1B L2
ENSG00000162433 AK4 -496398 sc-eQTL 1.98e-01 0.109 0.0847 0.4 cMono_IL1B L2
ENSG00000162434 JAK1 -416603 sc-eQTL 8.75e-01 -0.0122 0.0773 0.4 cMono_IL1B L2
ENSG00000213625 LEPROT -769436 sc-eQTL 3.40e-01 -0.0596 0.0623 0.4 cMono_IL1B L2
ENSG00000116678 LEPR -769501 sc-eQTL 5.69e-01 0.0516 0.0905 0.4 cMono_S100A L2
ENSG00000162433 AK4 -496398 sc-eQTL 2.08e-01 0.108 0.0856 0.4 cMono_S100A L2
ENSG00000162434 JAK1 -416603 sc-eQTL 5.39e-01 -0.0487 0.0792 0.4 cMono_S100A L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.80e-01 0.0801 0.074 0.4 cMono_S100A L2
ENSG00000162434 JAK1 -416603 sc-eQTL 2.87e-01 -0.121 0.114 0.391 gdT L2
ENSG00000162437 RAVER2 -93944 sc-eQTL 3.27e-01 -0.0985 0.1 0.391 gdT L2
ENSG00000213625 LEPROT -769436 sc-eQTL 9.49e-01 0.00765 0.12 0.391 gdT L2
ENSG00000116678 LEPR -769501 sc-eQTL 2.38e-01 0.106 0.0895 0.396 intMono L2
ENSG00000162433 AK4 -496398 sc-eQTL 1.40e-01 -0.125 0.0841 0.396 intMono L2
ENSG00000162434 JAK1 -416603 sc-eQTL 3.80e-01 -0.0686 0.078 0.396 intMono L2
ENSG00000213625 LEPROT -769436 sc-eQTL 7.18e-01 -0.0272 0.0753 0.396 intMono L2
ENSG00000116678 LEPR -769501 sc-eQTL 9.28e-01 -0.00804 0.0889 0.398 ncMono L2
ENSG00000162433 AK4 -496398 sc-eQTL 4.15e-01 -0.0646 0.0792 0.398 ncMono L2
ENSG00000162434 JAK1 -416603 sc-eQTL 5.44e-01 -0.039 0.0641 0.398 ncMono L2
ENSG00000213625 LEPROT -769436 sc-eQTL 6.50e-02 0.167 0.0902 0.398 ncMono L2
ENSG00000116678 LEPR -769501 sc-eQTL 5.45e-01 0.0582 0.0961 0.384 pDC L2
ENSG00000162433 AK4 -496398 sc-eQTL 5.74e-01 0.0353 0.0626 0.384 pDC L2
ENSG00000162434 JAK1 -416603 sc-eQTL 6.54e-01 0.0376 0.0837 0.384 pDC L2
ENSG00000162437 RAVER2 -93944 sc-eQTL 1.67e-01 0.13 0.0938 0.384 pDC L2
ENSG00000213625 LEPROT -769436 sc-eQTL 2.70e-01 0.115 0.103 0.384 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -416603 sc-eQTL 3.63e-01 0.0642 0.0704 0.4 B_Memory LOneK1K
ENSG00000213625 LEPROT -769436 sc-eQTL 7.23e-01 0.0321 0.0905 0.4 B_Memory LOneK1K
ENSG00000162434 JAK1 -416603 sc-eQTL 8.92e-01 -0.00953 0.0698 0.4 B_Naive LOneK1K
ENSG00000213625 LEPROT -769436 sc-eQTL 3.41e-01 -0.084 0.0881 0.4 B_Naive LOneK1K
ENSG00000116678 LEPR -769501 sc-eQTL 6.77e-01 -0.0378 0.0906 0.4 CD14_Mono LOneK1K
ENSG00000162433 AK4 -496398 sc-eQTL 6.28e-02 0.161 0.086 0.4 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -416603 sc-eQTL 8.31e-01 -0.0155 0.0726 0.4 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -769436 sc-eQTL 8.69e-01 0.01 0.0608 0.4 CD14_Mono LOneK1K
ENSG00000116678 LEPR -769501 sc-eQTL 5.16e-01 0.0585 0.0901 0.399 CD16_Mono LOneK1K
ENSG00000162433 AK4 -496398 sc-eQTL 1.43e-01 -0.119 0.0812 0.399 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -416603 sc-eQTL 1.92e-01 -0.0716 0.0547 0.399 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -769436 sc-eQTL 1.75e-01 0.104 0.0762 0.399 CD16_Mono LOneK1K
ENSG00000116678 LEPR -769501 sc-eQTL 3.55e-01 -0.0852 0.0918 0.397 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -416603 sc-eQTL 2.10e-01 -0.054 0.043 0.397 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -769436 sc-eQTL 3.45e-01 0.0901 0.0952 0.397 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000231485 AL357078.1 -416586 eQTL 0.0423 0.0794 0.039 0.00137 0.0 0.419

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 \N -315398 1.27e-06 1.19e-06 2.48e-07 1.18e-06 3.4e-07 6.02e-07 1.46e-06 3.65e-07 1.44e-06 6.18e-07 2.01e-06 8.44e-07 2.46e-06 2.59e-07 5.42e-07 9.42e-07 9.05e-07 8.55e-07 8.15e-07 6.26e-07 6.61e-07 1.75e-06 8.94e-07 5.64e-07 2.25e-06 6.01e-07 9.18e-07 8.53e-07 1.47e-06 1.31e-06 8.17e-07 1.89e-07 2.5e-07 6.58e-07 5.42e-07 4.6e-07 5.93e-07 2.38e-07 4.67e-07 2.79e-07 2.83e-07 1.62e-06 1.08e-07 1.3e-07 2.22e-07 1.24e-07 2.22e-07 5.45e-08 1.6e-07