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Genes within 1Mb (chr1:64649636:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -418118 sc-eQTL 9.46e-01 -0.0038 0.0558 0.6 B L1
ENSG00000213625 LEPROT -770951 sc-eQTL 4.57e-01 0.0531 0.0712 0.6 B L1
ENSG00000158966 CACHD1 179507 sc-eQTL 8.98e-01 0.00666 0.0521 0.6 CD4T L1
ENSG00000162434 JAK1 -418118 sc-eQTL 1.68e-01 0.0751 0.0544 0.6 CD4T L1
ENSG00000213625 LEPROT -770951 sc-eQTL 9.52e-01 -0.00519 0.0854 0.6 CD4T L1
ENSG00000116678 LEPR -771016 sc-eQTL 2.04e-01 -0.117 0.0916 0.6 CD8T L1
ENSG00000158966 CACHD1 179507 sc-eQTL 5.41e-01 -0.0277 0.0452 0.6 CD8T L1
ENSG00000162434 JAK1 -418118 sc-eQTL 5.73e-03 0.196 0.07 0.6 CD8T L1
ENSG00000213625 LEPROT -770951 sc-eQTL 9.79e-01 0.0025 0.0945 0.6 CD8T L1
ENSG00000116678 LEPR -771016 sc-eQTL 3.41e-01 0.089 0.0932 0.608 DC L1
ENSG00000162433 AK4 -497913 sc-eQTL 5.01e-01 -0.0529 0.0785 0.608 DC L1
ENSG00000162434 JAK1 -418118 sc-eQTL 6.36e-01 -0.0309 0.0653 0.608 DC L1
ENSG00000162437 RAVER2 -95459 sc-eQTL 2.98e-01 -0.0871 0.0835 0.608 DC L1
ENSG00000213625 LEPROT -770951 sc-eQTL 9.79e-01 0.00247 0.0927 0.608 DC L1
ENSG00000116678 LEPR -771016 sc-eQTL 8.88e-01 0.013 0.0919 0.6 Mono L1
ENSG00000162433 AK4 -497913 sc-eQTL 2.23e-01 -0.102 0.0838 0.6 Mono L1
ENSG00000162434 JAK1 -418118 sc-eQTL 9.24e-01 -0.00574 0.06 0.6 Mono L1
ENSG00000213625 LEPROT -770951 sc-eQTL 5.74e-01 -0.0334 0.0593 0.6 Mono L1
ENSG00000116678 LEPR -771016 sc-eQTL 3.37e-01 0.0858 0.0892 0.601 NK L1
ENSG00000162434 JAK1 -418118 sc-eQTL 1.78e-01 0.0568 0.042 0.601 NK L1
ENSG00000213625 LEPROT -770951 sc-eQTL 3.35e-01 -0.0928 0.0961 0.601 NK L1
ENSG00000162434 JAK1 -418118 sc-eQTL 5.56e-03 0.166 0.0592 0.6 Other_T L1
ENSG00000162437 RAVER2 -95459 sc-eQTL 6.87e-01 -0.0353 0.0876 0.6 Other_T L1
ENSG00000213625 LEPROT -770951 sc-eQTL 3.06e-01 0.0969 0.0945 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -418118 sc-eQTL 2.15e-01 0.12 0.0965 0.61 B_Activated L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.14e-01 -0.126 0.101 0.61 B_Activated L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.42e-01 -0.0753 0.079 0.601 B_Intermediate L2
ENSG00000213625 LEPROT -770951 sc-eQTL 6.37e-01 -0.0438 0.0928 0.601 B_Intermediate L2
ENSG00000162434 JAK1 -418118 sc-eQTL 5.57e-01 -0.0474 0.0805 0.601 B_Memory L2
ENSG00000213625 LEPROT -770951 sc-eQTL 5.43e-01 -0.0571 0.0936 0.601 B_Memory L2
ENSG00000162434 JAK1 -418118 sc-eQTL 6.84e-01 0.0296 0.0727 0.6 B_Naive1 L2
ENSG00000213625 LEPROT -770951 sc-eQTL 4.04e-01 0.0791 0.0947 0.6 B_Naive1 L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.44e-01 -0.0728 0.0767 0.603 B_Naive2 L2
ENSG00000213625 LEPROT -770951 sc-eQTL 7.73e-01 -0.0268 0.0926 0.603 B_Naive2 L2
ENSG00000158966 CACHD1 179507 sc-eQTL 4.24e-01 0.0286 0.0358 0.611 CD4_CTL L2
ENSG00000162434 JAK1 -418118 sc-eQTL 6.00e-01 0.0464 0.0883 0.611 CD4_CTL L2
ENSG00000213625 LEPROT -770951 sc-eQTL 5.83e-01 -0.0558 0.101 0.611 CD4_CTL L2
ENSG00000158966 CACHD1 179507 sc-eQTL 5.64e-01 -0.0298 0.0515 0.6 CD4_Naive L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.24e-01 0.0519 0.0525 0.6 CD4_Naive L2
ENSG00000213625 LEPROT -770951 sc-eQTL 7.18e-01 -0.0309 0.0853 0.6 CD4_Naive L2
ENSG00000158966 CACHD1 179507 sc-eQTL 2.65e-01 0.082 0.0734 0.6 CD4_TCM L2
ENSG00000162434 JAK1 -418118 sc-eQTL 1.83e-02 0.141 0.0595 0.6 CD4_TCM L2
ENSG00000213625 LEPROT -770951 sc-eQTL 5.51e-01 0.0521 0.0873 0.6 CD4_TCM L2
ENSG00000158966 CACHD1 179507 sc-eQTL 5.70e-01 0.0322 0.0566 0.6 CD4_TEM L2
ENSG00000162434 JAK1 -418118 sc-eQTL 7.62e-02 0.143 0.08 0.6 CD4_TEM L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.73e-01 0.105 0.0954 0.6 CD4_TEM L2
ENSG00000116678 LEPR -771016 sc-eQTL 5.12e-01 -0.0592 0.0902 0.6 CD8_CTL L2
ENSG00000158966 CACHD1 179507 sc-eQTL 6.97e-01 0.0158 0.0406 0.6 CD8_CTL L2
ENSG00000162434 JAK1 -418118 sc-eQTL 1.61e-02 0.181 0.0748 0.6 CD8_CTL L2
ENSG00000213625 LEPROT -770951 sc-eQTL 4.74e-01 -0.0663 0.0925 0.6 CD8_CTL L2
ENSG00000116678 LEPR -771016 sc-eQTL 8.55e-02 -0.153 0.0884 0.6 CD8_Naive L2
ENSG00000158966 CACHD1 179507 sc-eQTL 9.52e-01 -0.00375 0.0617 0.6 CD8_Naive L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.80e-01 0.0801 0.074 0.6 CD8_Naive L2
ENSG00000213625 LEPROT -770951 sc-eQTL 7.81e-01 -0.0253 0.0909 0.6 CD8_Naive L2
ENSG00000116678 LEPR -771016 sc-eQTL 2.29e-01 -0.108 0.0898 0.604 CD8_TCM L2
ENSG00000158966 CACHD1 179507 sc-eQTL 4.72e-01 -0.0351 0.0486 0.604 CD8_TCM L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.52e-01 0.0729 0.0781 0.604 CD8_TCM L2
ENSG00000213625 LEPROT -770951 sc-eQTL 5.76e-01 -0.0547 0.0976 0.604 CD8_TCM L2
ENSG00000116678 LEPR -771016 sc-eQTL 4.78e-01 0.0588 0.0828 0.603 CD8_TEM L2
ENSG00000158966 CACHD1 179507 sc-eQTL 1.48e-01 -0.0286 0.0197 0.603 CD8_TEM L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.38e-01 0.111 0.0935 0.603 CD8_TEM L2
ENSG00000213625 LEPROT -770951 sc-eQTL 3.19e-02 0.206 0.0955 0.603 CD8_TEM L2
ENSG00000162434 JAK1 -418118 sc-eQTL 1.23e-01 0.126 0.0813 0.597 MAIT L2
ENSG00000162437 RAVER2 -95459 sc-eQTL 2.01e-01 -0.111 0.0868 0.597 MAIT L2
ENSG00000213625 LEPROT -770951 sc-eQTL 9.67e-01 -0.00389 0.0942 0.597 MAIT L2
ENSG00000116678 LEPR -771016 sc-eQTL 6.10e-01 0.0449 0.0878 0.607 NK_CD56bright L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.90e-01 0.0517 0.0601 0.607 NK_CD56bright L2
ENSG00000213625 LEPROT -770951 sc-eQTL 3.78e-01 -0.0872 0.0987 0.607 NK_CD56bright L2
ENSG00000116678 LEPR -771016 sc-eQTL 9.67e-01 0.00393 0.094 0.603 NK_CD56dim L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.64e-01 0.0548 0.0489 0.603 NK_CD56dim L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.27e-01 -0.12 0.099 0.603 NK_CD56dim L2
ENSG00000116678 LEPR -771016 sc-eQTL 7.34e-01 -0.029 0.0852 0.607 NK_HLA L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.93e-01 0.0697 0.0661 0.607 NK_HLA L2
ENSG00000213625 LEPROT -770951 sc-eQTL 3.70e-01 0.0922 0.103 0.607 NK_HLA L2
ENSG00000116678 LEPR -771016 sc-eQTL 3.01e-01 0.0947 0.0914 0.603 NK_cytokine L2
ENSG00000162434 JAK1 -418118 sc-eQTL 1.26e-01 0.0815 0.053 0.603 NK_cytokine L2
ENSG00000213625 LEPROT -770951 sc-eQTL 7.73e-01 -0.028 0.0969 0.603 NK_cytokine L2
ENSG00000162434 JAK1 -418118 sc-eQTL 9.17e-01 -0.00876 0.0841 0.604 PB L2
ENSG00000213625 LEPROT -770951 sc-eQTL 1.28e-01 0.179 0.117 0.604 PB L2
ENSG00000162434 JAK1 -418118 sc-eQTL 4.96e-01 -0.042 0.0615 0.602 Pro_T L2
ENSG00000162437 RAVER2 -95459 sc-eQTL 5.53e-01 -0.0482 0.0812 0.602 Pro_T L2
ENSG00000213625 LEPROT -770951 sc-eQTL 1.49e-01 0.138 0.0954 0.602 Pro_T L2
ENSG00000158966 CACHD1 179507 sc-eQTL 2.90e-01 0.0753 0.0709 0.6 Treg L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.99e-01 0.0786 0.0756 0.6 Treg L2
ENSG00000213625 LEPROT -770951 sc-eQTL 9.94e-01 0.00077 0.0982 0.6 Treg L2
ENSG00000116678 LEPR -771016 sc-eQTL 1.92e-01 0.125 0.0957 0.6 cDC L2
ENSG00000162433 AK4 -497913 sc-eQTL 6.88e-01 -0.0341 0.0849 0.6 cDC L2
ENSG00000162434 JAK1 -418118 sc-eQTL 5.28e-01 0.05 0.0792 0.6 cDC L2
ENSG00000162437 RAVER2 -95459 sc-eQTL 3.41e-01 -0.0829 0.0869 0.6 cDC L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.56e-01 0.11 0.0963 0.6 cDC L2
ENSG00000116678 LEPR -771016 sc-eQTL 2.26e-01 0.112 0.0921 0.6 cMono_IL1B L2
ENSG00000162433 AK4 -497913 sc-eQTL 1.98e-01 -0.109 0.0847 0.6 cMono_IL1B L2
ENSG00000162434 JAK1 -418118 sc-eQTL 8.75e-01 0.0122 0.0773 0.6 cMono_IL1B L2
ENSG00000213625 LEPROT -770951 sc-eQTL 3.40e-01 0.0596 0.0623 0.6 cMono_IL1B L2
ENSG00000116678 LEPR -771016 sc-eQTL 5.69e-01 -0.0516 0.0905 0.6 cMono_S100A L2
ENSG00000162433 AK4 -497913 sc-eQTL 2.08e-01 -0.108 0.0856 0.6 cMono_S100A L2
ENSG00000162434 JAK1 -418118 sc-eQTL 5.39e-01 0.0487 0.0792 0.6 cMono_S100A L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.80e-01 -0.0801 0.074 0.6 cMono_S100A L2
ENSG00000162434 JAK1 -418118 sc-eQTL 2.87e-01 0.121 0.114 0.609 gdT L2
ENSG00000162437 RAVER2 -95459 sc-eQTL 3.27e-01 0.0985 0.1 0.609 gdT L2
ENSG00000213625 LEPROT -770951 sc-eQTL 9.49e-01 -0.00765 0.12 0.609 gdT L2
ENSG00000116678 LEPR -771016 sc-eQTL 2.38e-01 -0.106 0.0895 0.604 intMono L2
ENSG00000162433 AK4 -497913 sc-eQTL 1.40e-01 0.125 0.0841 0.604 intMono L2
ENSG00000162434 JAK1 -418118 sc-eQTL 3.80e-01 0.0686 0.078 0.604 intMono L2
ENSG00000213625 LEPROT -770951 sc-eQTL 7.18e-01 0.0272 0.0753 0.604 intMono L2
ENSG00000116678 LEPR -771016 sc-eQTL 9.28e-01 0.00804 0.0889 0.602 ncMono L2
ENSG00000162433 AK4 -497913 sc-eQTL 4.15e-01 0.0646 0.0792 0.602 ncMono L2
ENSG00000162434 JAK1 -418118 sc-eQTL 5.44e-01 0.039 0.0641 0.602 ncMono L2
ENSG00000213625 LEPROT -770951 sc-eQTL 6.50e-02 -0.167 0.0902 0.602 ncMono L2
ENSG00000116678 LEPR -771016 sc-eQTL 5.45e-01 -0.0582 0.0961 0.616 pDC L2
ENSG00000162433 AK4 -497913 sc-eQTL 5.74e-01 -0.0353 0.0626 0.616 pDC L2
ENSG00000162434 JAK1 -418118 sc-eQTL 6.54e-01 -0.0376 0.0837 0.616 pDC L2
ENSG00000162437 RAVER2 -95459 sc-eQTL 1.67e-01 -0.13 0.0938 0.616 pDC L2
ENSG00000213625 LEPROT -770951 sc-eQTL 2.70e-01 -0.115 0.103 0.616 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -418118 sc-eQTL 3.63e-01 -0.0642 0.0704 0.6 B_Memory LOneK1K
ENSG00000213625 LEPROT -770951 sc-eQTL 7.23e-01 -0.0321 0.0905 0.6 B_Memory LOneK1K
ENSG00000162434 JAK1 -418118 sc-eQTL 8.92e-01 0.00953 0.0698 0.6 B_Naive LOneK1K
ENSG00000213625 LEPROT -770951 sc-eQTL 3.41e-01 0.084 0.0881 0.6 B_Naive LOneK1K
ENSG00000116678 LEPR -771016 sc-eQTL 6.77e-01 0.0378 0.0906 0.6 CD14_Mono LOneK1K
ENSG00000162433 AK4 -497913 sc-eQTL 6.28e-02 -0.161 0.086 0.6 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -418118 sc-eQTL 8.31e-01 0.0155 0.0726 0.6 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -770951 sc-eQTL 8.69e-01 -0.01 0.0608 0.6 CD14_Mono LOneK1K
ENSG00000116678 LEPR -771016 sc-eQTL 5.16e-01 -0.0585 0.0901 0.601 CD16_Mono LOneK1K
ENSG00000162433 AK4 -497913 sc-eQTL 1.43e-01 0.119 0.0812 0.601 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -418118 sc-eQTL 1.92e-01 0.0716 0.0547 0.601 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -770951 sc-eQTL 1.75e-01 -0.104 0.0762 0.601 CD16_Mono LOneK1K
ENSG00000116678 LEPR -771016 sc-eQTL 3.55e-01 0.0852 0.0918 0.603 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -418118 sc-eQTL 2.10e-01 0.054 0.043 0.603 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -770951 sc-eQTL 3.45e-01 -0.0901 0.0952 0.603 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000231485 AL357078.1 -418101 eQTL 0.0411 -0.0794 0.0388 0.00139 0.0 0.419

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 \N -316913 1.27e-06 1.13e-06 3.04e-07 1.28e-06 2.43e-07 6.02e-07 1.6e-06 3.75e-07 1.49e-06 4.78e-07 1.89e-06 6.02e-07 2.51e-06 2.95e-07 5.39e-07 6.89e-07 9.2e-07 5.99e-07 8.3e-07 5.73e-07 5.66e-07 1.6e-06 8.66e-07 5.54e-07 2.25e-06 3.06e-07 9.09e-07 8.53e-07 1.28e-06 1.16e-06 7.41e-07 3.85e-08 2.54e-07 6.78e-07 5.31e-07 4.75e-07 6.69e-07 3.37e-07 4.53e-07 3.1e-07 2.32e-07 1.53e-06 3.5e-07 1.99e-07 1.88e-07 1.98e-07 2.27e-07 8.35e-08 9.32e-08