logo

Genes within 1Mb (chr1:64643816:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -423938 sc-eQTL 6.18e-01 -0.0282 0.0564 0.44 B L1
ENSG00000213625 LEPROT -776771 sc-eQTL 3.37e-01 0.0693 0.072 0.44 B L1
ENSG00000158966 CACHD1 173687 sc-eQTL 4.21e-01 0.0425 0.0528 0.44 CD4T L1
ENSG00000162434 JAK1 -423938 sc-eQTL 3.32e-01 0.0537 0.0552 0.44 CD4T L1
ENSG00000213625 LEPROT -776771 sc-eQTL 4.38e-01 0.0672 0.0865 0.44 CD4T L1
ENSG00000116678 LEPR -776836 sc-eQTL 1.49e-01 -0.134 0.0924 0.44 CD8T L1
ENSG00000158966 CACHD1 173687 sc-eQTL 8.18e-01 -0.0105 0.0457 0.44 CD8T L1
ENSG00000162434 JAK1 -423938 sc-eQTL 4.44e-02 0.144 0.0713 0.44 CD8T L1
ENSG00000213625 LEPROT -776771 sc-eQTL 8.91e-01 0.0131 0.0954 0.44 CD8T L1
ENSG00000116678 LEPR -776836 sc-eQTL 1.66e-01 0.128 0.0923 0.448 DC L1
ENSG00000162433 AK4 -503733 sc-eQTL 3.73e-01 -0.0695 0.0778 0.448 DC L1
ENSG00000162434 JAK1 -423938 sc-eQTL 7.01e-01 -0.025 0.0648 0.448 DC L1
ENSG00000162437 RAVER2 -101279 sc-eQTL 3.86e-01 -0.072 0.0829 0.448 DC L1
ENSG00000213625 LEPROT -776771 sc-eQTL 6.47e-01 -0.0421 0.0919 0.448 DC L1
ENSG00000116678 LEPR -776836 sc-eQTL 9.13e-01 -0.00998 0.0911 0.44 Mono L1
ENSG00000162433 AK4 -503733 sc-eQTL 7.03e-01 0.0318 0.0833 0.44 Mono L1
ENSG00000162434 JAK1 -423938 sc-eQTL 2.83e-01 -0.0638 0.0593 0.44 Mono L1
ENSG00000213625 LEPROT -776771 sc-eQTL 4.85e-01 0.0411 0.0588 0.44 Mono L1
ENSG00000116678 LEPR -776836 sc-eQTL 3.21e-01 -0.0872 0.0877 0.44 NK L1
ENSG00000162434 JAK1 -423938 sc-eQTL 9.21e-01 0.00414 0.0415 0.44 NK L1
ENSG00000213625 LEPROT -776771 sc-eQTL 9.10e-01 0.0107 0.0947 0.44 NK L1
ENSG00000162434 JAK1 -423938 sc-eQTL 2.12e-02 0.138 0.0595 0.44 Other_T L1
ENSG00000162437 RAVER2 -101279 sc-eQTL 9.38e-01 -0.00685 0.0875 0.44 Other_T L1
ENSG00000213625 LEPROT -776771 sc-eQTL 1.65e-01 0.131 0.0942 0.44 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -423938 sc-eQTL 8.52e-01 0.018 0.096 0.439 B_Activated L2
ENSG00000213625 LEPROT -776771 sc-eQTL 9.55e-01 0.00572 0.1 0.439 B_Activated L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.72e-01 -0.0334 0.0787 0.44 B_Intermediate L2
ENSG00000213625 LEPROT -776771 sc-eQTL 4.88e-01 0.0641 0.0922 0.44 B_Intermediate L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.71e-01 0.0704 0.0786 0.442 B_Memory L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.93e-02 -0.172 0.0908 0.442 B_Memory L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.89e-01 -0.0292 0.0727 0.44 B_Naive1 L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.48e-01 0.0891 0.0947 0.44 B_Naive1 L2
ENSG00000162434 JAK1 -423938 sc-eQTL 5.27e-01 -0.047 0.0743 0.442 B_Naive2 L2
ENSG00000213625 LEPROT -776771 sc-eQTL 8.85e-01 -0.013 0.0896 0.442 B_Naive2 L2
ENSG00000158966 CACHD1 173687 sc-eQTL 9.54e-01 -0.00205 0.0357 0.452 CD4_CTL L2
ENSG00000162434 JAK1 -423938 sc-eQTL 1.42e-01 0.129 0.0875 0.452 CD4_CTL L2
ENSG00000213625 LEPROT -776771 sc-eQTL 6.77e-01 -0.0421 0.101 0.452 CD4_CTL L2
ENSG00000158966 CACHD1 173687 sc-eQTL 8.22e-01 0.0117 0.052 0.44 CD4_Naive L2
ENSG00000162434 JAK1 -423938 sc-eQTL 5.63e-01 0.0307 0.053 0.44 CD4_Naive L2
ENSG00000213625 LEPROT -776771 sc-eQTL 4.71e-01 0.0621 0.086 0.44 CD4_Naive L2
ENSG00000158966 CACHD1 173687 sc-eQTL 1.00e-01 0.122 0.0741 0.44 CD4_TCM L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.68e-02 0.127 0.0604 0.44 CD4_TCM L2
ENSG00000213625 LEPROT -776771 sc-eQTL 6.27e-01 0.043 0.0885 0.44 CD4_TCM L2
ENSG00000158966 CACHD1 173687 sc-eQTL 6.72e-01 0.0241 0.0568 0.44 CD4_TEM L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.43e-02 0.17 0.0799 0.44 CD4_TEM L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.69e-01 0.106 0.0956 0.44 CD4_TEM L2
ENSG00000116678 LEPR -776836 sc-eQTL 5.56e-01 -0.0535 0.0906 0.44 CD8_CTL L2
ENSG00000158966 CACHD1 173687 sc-eQTL 3.72e-01 0.0364 0.0407 0.44 CD8_CTL L2
ENSG00000162434 JAK1 -423938 sc-eQTL 1.84e-01 0.101 0.0758 0.44 CD8_CTL L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.68e-01 -0.0837 0.0928 0.44 CD8_CTL L2
ENSG00000116678 LEPR -776836 sc-eQTL 1.88e-01 -0.118 0.0892 0.44 CD8_Naive L2
ENSG00000158966 CACHD1 173687 sc-eQTL 4.70e-01 0.0448 0.062 0.44 CD8_Naive L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.04e-01 0.0768 0.0745 0.44 CD8_Naive L2
ENSG00000213625 LEPROT -776771 sc-eQTL 6.75e-01 0.0384 0.0914 0.44 CD8_Naive L2
ENSG00000116678 LEPR -776836 sc-eQTL 1.59e-01 -0.129 0.0914 0.438 CD8_TCM L2
ENSG00000158966 CACHD1 173687 sc-eQTL 3.63e-01 -0.0451 0.0495 0.438 CD8_TCM L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.29e-01 0.0779 0.0796 0.438 CD8_TCM L2
ENSG00000213625 LEPROT -776771 sc-eQTL 6.93e-01 -0.0393 0.0995 0.438 CD8_TCM L2
ENSG00000116678 LEPR -776836 sc-eQTL 3.15e-01 0.0839 0.0832 0.445 CD8_TEM L2
ENSG00000158966 CACHD1 173687 sc-eQTL 8.28e-01 0.00435 0.02 0.445 CD8_TEM L2
ENSG00000162434 JAK1 -423938 sc-eQTL 4.89e-03 0.263 0.0924 0.445 CD8_TEM L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.16e-02 0.222 0.0959 0.445 CD8_TEM L2
ENSG00000162434 JAK1 -423938 sc-eQTL 5.10e-02 0.16 0.0817 0.442 MAIT L2
ENSG00000162437 RAVER2 -101279 sc-eQTL 9.35e-01 -0.00722 0.0879 0.442 MAIT L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.60e-01 0.0555 0.0949 0.442 MAIT L2
ENSG00000116678 LEPR -776836 sc-eQTL 8.77e-01 -0.0136 0.0877 0.442 NK_CD56bright L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.81e-01 0.0247 0.0601 0.442 NK_CD56bright L2
ENSG00000213625 LEPROT -776771 sc-eQTL 8.21e-01 0.0224 0.0987 0.442 NK_CD56bright L2
ENSG00000116678 LEPR -776836 sc-eQTL 3.80e-01 -0.0812 0.0923 0.44 NK_CD56dim L2
ENSG00000162434 JAK1 -423938 sc-eQTL 9.54e-01 -0.00276 0.0483 0.44 NK_CD56dim L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.39e-01 -0.0601 0.0976 0.44 NK_CD56dim L2
ENSG00000116678 LEPR -776836 sc-eQTL 3.49e-01 -0.0781 0.0831 0.443 NK_HLA L2
ENSG00000162434 JAK1 -423938 sc-eQTL 9.32e-01 0.00554 0.0649 0.443 NK_HLA L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.00e-01 0.129 0.1 0.443 NK_HLA L2
ENSG00000116678 LEPR -776836 sc-eQTL 1.87e-01 -0.118 0.0889 0.44 NK_cytokine L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.64e-01 0.0226 0.0519 0.44 NK_cytokine L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.38e-01 -0.0905 0.0943 0.44 NK_cytokine L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.67e-01 0.0338 0.0782 0.437 PB L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.93e-02 0.206 0.108 0.437 PB L2
ENSG00000162434 JAK1 -423938 sc-eQTL 9.42e-01 -0.00447 0.0615 0.439 Pro_T L2
ENSG00000162437 RAVER2 -101279 sc-eQTL 6.87e-01 -0.0328 0.0812 0.439 Pro_T L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.56e-01 0.0564 0.0957 0.439 Pro_T L2
ENSG00000158966 CACHD1 173687 sc-eQTL 4.03e-02 0.146 0.0707 0.44 Treg L2
ENSG00000162434 JAK1 -423938 sc-eQTL 5.91e-01 0.0409 0.076 0.44 Treg L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.67e-01 0.0889 0.0984 0.44 Treg L2
ENSG00000116678 LEPR -776836 sc-eQTL 9.08e-02 0.157 0.0925 0.434 cDC L2
ENSG00000162433 AK4 -503733 sc-eQTL 3.61e-01 -0.0753 0.0821 0.434 cDC L2
ENSG00000162434 JAK1 -423938 sc-eQTL 4.68e-01 -0.0558 0.0767 0.434 cDC L2
ENSG00000162437 RAVER2 -101279 sc-eQTL 8.21e-01 -0.0192 0.0844 0.434 cDC L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.39e-01 0.0895 0.0934 0.434 cDC L2
ENSG00000116678 LEPR -776836 sc-eQTL 2.16e-01 0.113 0.0909 0.44 cMono_IL1B L2
ENSG00000162433 AK4 -503733 sc-eQTL 9.47e-01 0.00555 0.0839 0.44 cMono_IL1B L2
ENSG00000162434 JAK1 -423938 sc-eQTL 1.84e-01 -0.101 0.076 0.44 cMono_IL1B L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.73e-01 0.0676 0.0615 0.44 cMono_IL1B L2
ENSG00000116678 LEPR -776836 sc-eQTL 1.38e-01 -0.135 0.0905 0.44 cMono_S100A L2
ENSG00000162433 AK4 -503733 sc-eQTL 9.12e-01 -0.00959 0.0863 0.44 cMono_S100A L2
ENSG00000162434 JAK1 -423938 sc-eQTL 3.74e-01 0.0708 0.0795 0.44 cMono_S100A L2
ENSG00000213625 LEPROT -776771 sc-eQTL 7.64e-01 0.0224 0.0745 0.44 cMono_S100A L2
ENSG00000162434 JAK1 -423938 sc-eQTL 7.32e-01 0.0386 0.112 0.445 gdT L2
ENSG00000162437 RAVER2 -101279 sc-eQTL 4.80e-01 0.0699 0.0988 0.445 gdT L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.64e-01 0.132 0.118 0.445 gdT L2
ENSG00000116678 LEPR -776836 sc-eQTL 6.66e-01 -0.0386 0.0895 0.433 intMono L2
ENSG00000162433 AK4 -503733 sc-eQTL 7.45e-02 0.15 0.0837 0.433 intMono L2
ENSG00000162434 JAK1 -423938 sc-eQTL 6.64e-01 0.034 0.0779 0.433 intMono L2
ENSG00000213625 LEPROT -776771 sc-eQTL 5.01e-02 0.147 0.0744 0.433 intMono L2
ENSG00000116678 LEPR -776836 sc-eQTL 4.50e-01 0.0673 0.0889 0.443 ncMono L2
ENSG00000162433 AK4 -503733 sc-eQTL 4.38e-01 0.0617 0.0793 0.443 ncMono L2
ENSG00000162434 JAK1 -423938 sc-eQTL 9.47e-01 -0.0043 0.0642 0.443 ncMono L2
ENSG00000213625 LEPROT -776771 sc-eQTL 3.42e-01 -0.0867 0.0909 0.443 ncMono L2
ENSG00000116678 LEPR -776836 sc-eQTL 4.25e-01 0.0778 0.0973 0.452 pDC L2
ENSG00000162433 AK4 -503733 sc-eQTL 7.34e-01 0.0216 0.0635 0.452 pDC L2
ENSG00000162434 JAK1 -423938 sc-eQTL 7.39e-01 0.0283 0.0848 0.452 pDC L2
ENSG00000162437 RAVER2 -101279 sc-eQTL 4.54e-02 -0.19 0.0944 0.452 pDC L2
ENSG00000213625 LEPROT -776771 sc-eQTL 2.51e-01 -0.121 0.105 0.452 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -423938 sc-eQTL 6.75e-01 -0.0295 0.0703 0.44 B_Memory LOneK1K
ENSG00000213625 LEPROT -776771 sc-eQTL 9.80e-01 0.00222 0.0903 0.44 B_Memory LOneK1K
ENSG00000162434 JAK1 -423938 sc-eQTL 6.91e-01 -0.0278 0.0697 0.44 B_Naive LOneK1K
ENSG00000213625 LEPROT -776771 sc-eQTL 3.88e-01 0.076 0.0879 0.44 B_Naive LOneK1K
ENSG00000116678 LEPR -776836 sc-eQTL 9.54e-01 -0.0052 0.0904 0.44 CD14_Mono LOneK1K
ENSG00000162433 AK4 -503733 sc-eQTL 9.62e-01 -0.00409 0.0865 0.44 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -423938 sc-eQTL 4.76e-01 -0.0516 0.0723 0.44 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -776771 sc-eQTL 5.84e-01 0.0332 0.0606 0.44 CD14_Mono LOneK1K
ENSG00000116678 LEPR -776836 sc-eQTL 6.15e-01 0.0452 0.0898 0.44 CD16_Mono LOneK1K
ENSG00000162433 AK4 -503733 sc-eQTL 1.11e-01 0.13 0.0809 0.44 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -423938 sc-eQTL 9.62e-01 0.00261 0.0547 0.44 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -776771 sc-eQTL 8.94e-01 0.0102 0.0763 0.44 CD16_Mono LOneK1K
ENSG00000116678 LEPR -776836 sc-eQTL 2.89e-01 -0.0957 0.09 0.44 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -423938 sc-eQTL 9.97e-01 -0.000164 0.0423 0.44 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -776771 sc-eQTL 7.90e-01 -0.0249 0.0936 0.44 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -322733 eQTL 0.014 0.0374 0.0152 0.0 0.0 0.427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -322733 1.42e-06 1.49e-06 3.35e-07 1.21e-06 3.36e-07 5.83e-07 1.49e-06 4.16e-07 1.66e-06 5.19e-07 2e-06 8.48e-07 2.5e-06 2.77e-07 5.32e-07 8.22e-07 8.85e-07 9.45e-07 7.65e-07 5.01e-07 7.11e-07 1.71e-06 8.94e-07 5.64e-07 2.23e-06 6.16e-07 9.72e-07 9.6e-07 1.47e-06 1.27e-06 8.11e-07 2.42e-07 2.5e-07 6.69e-07 5.15e-07 4.23e-07 6.19e-07 2.47e-07 3.76e-07 2.99e-07 2.58e-07 1.62e-06 1.93e-07 1.99e-07 2.62e-07 1.19e-07 2.33e-07 8.96e-08 1.36e-07
ENSG00000231485 \N -423921 1.27e-06 9.44e-07 1.46e-07 5.11e-07 1.19e-07 3.69e-07 9.74e-07 3.49e-07 1.11e-06 2.98e-07 1.33e-06 5.73e-07 1.49e-06 2.29e-07 4.01e-07 3.68e-07 7.79e-07 5.53e-07 3.95e-07 4.68e-07 2.54e-07 7.26e-07 5.82e-07 4.22e-07 1.64e-06 2.48e-07 6.23e-07 5.31e-07 6.85e-07 1.01e-06 4.71e-07 3.82e-08 1.32e-07 2.31e-07 3.52e-07 2.59e-07 2.96e-07 1.5e-07 1.12e-07 4.17e-08 1.04e-07 1.09e-06 7.6e-08 1.3e-07 1.73e-07 4.48e-08 1.49e-07 2.31e-08 5.4e-08