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Genes within 1Mb (chr1:64620259:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -447495 sc-eQTL 3.61e-01 0.056 0.0611 0.259 B L1
ENSG00000213625 LEPROT -800328 sc-eQTL 3.13e-01 -0.0789 0.078 0.259 B L1
ENSG00000158966 CACHD1 150130 sc-eQTL 7.21e-01 -0.0206 0.0575 0.259 CD4T L1
ENSG00000162434 JAK1 -447495 sc-eQTL 4.30e-01 -0.0476 0.0602 0.259 CD4T L1
ENSG00000213625 LEPROT -800328 sc-eQTL 1.66e-01 0.13 0.0938 0.259 CD4T L1
ENSG00000116678 LEPR -800393 sc-eQTL 5.00e-01 -0.0681 0.101 0.259 CD8T L1
ENSG00000158966 CACHD1 150130 sc-eQTL 8.27e-01 0.0109 0.0496 0.259 CD8T L1
ENSG00000162434 JAK1 -447495 sc-eQTL 7.83e-01 -0.0215 0.0782 0.259 CD8T L1
ENSG00000213625 LEPROT -800328 sc-eQTL 8.27e-01 -0.0226 0.104 0.259 CD8T L1
ENSG00000116678 LEPR -800393 sc-eQTL 2.07e-01 0.126 0.0997 0.257 DC L1
ENSG00000162433 AK4 -527290 sc-eQTL 4.06e-01 -0.0699 0.084 0.257 DC L1
ENSG00000162434 JAK1 -447495 sc-eQTL 8.35e-01 0.0146 0.07 0.257 DC L1
ENSG00000162437 RAVER2 -124836 sc-eQTL 7.98e-01 0.023 0.0897 0.257 DC L1
ENSG00000213625 LEPROT -800328 sc-eQTL 7.71e-01 0.029 0.0992 0.257 DC L1
ENSG00000116678 LEPR -800393 sc-eQTL 6.26e-01 -0.0496 0.102 0.259 Mono L1
ENSG00000162433 AK4 -527290 sc-eQTL 2.23e-03 -0.281 0.0909 0.259 Mono L1
ENSG00000162434 JAK1 -447495 sc-eQTL 2.31e-01 0.0794 0.0661 0.259 Mono L1
ENSG00000213625 LEPROT -800328 sc-eQTL 3.49e-01 0.0615 0.0655 0.259 Mono L1
ENSG00000116678 LEPR -800393 sc-eQTL 5.41e-01 0.0598 0.0977 0.26 NK L1
ENSG00000162434 JAK1 -447495 sc-eQTL 2.40e-01 0.0543 0.046 0.26 NK L1
ENSG00000213625 LEPROT -800328 sc-eQTL 8.92e-01 -0.0144 0.105 0.26 NK L1
ENSG00000162434 JAK1 -447495 sc-eQTL 7.49e-01 -0.0212 0.0664 0.259 Other_T L1
ENSG00000162437 RAVER2 -124836 sc-eQTL 1.03e-01 -0.157 0.0959 0.259 Other_T L1
ENSG00000213625 LEPROT -800328 sc-eQTL 8.91e-01 -0.0143 0.104 0.259 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -447495 sc-eQTL 9.48e-01 -0.00723 0.11 0.27 B_Activated L2
ENSG00000213625 LEPROT -800328 sc-eQTL 9.59e-01 -0.00592 0.115 0.27 B_Activated L2
ENSG00000162434 JAK1 -447495 sc-eQTL 3.97e-01 0.0757 0.0892 0.258 B_Intermediate L2
ENSG00000213625 LEPROT -800328 sc-eQTL 9.91e-01 0.00116 0.105 0.258 B_Intermediate L2
ENSG00000162434 JAK1 -447495 sc-eQTL 6.67e-01 -0.0382 0.0887 0.256 B_Memory L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.59e-01 -0.0184 0.103 0.256 B_Memory L2
ENSG00000162434 JAK1 -447495 sc-eQTL 5.75e-01 0.0443 0.0789 0.259 B_Naive1 L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.01e-01 0.026 0.103 0.259 B_Naive1 L2
ENSG00000162434 JAK1 -447495 sc-eQTL 7.40e-01 0.0275 0.0829 0.258 B_Naive2 L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.11e-01 -0.024 0.0999 0.258 B_Naive2 L2
ENSG00000158966 CACHD1 150130 sc-eQTL 8.97e-01 -0.00514 0.0395 0.261 CD4_CTL L2
ENSG00000162434 JAK1 -447495 sc-eQTL 7.09e-01 -0.0364 0.0973 0.261 CD4_CTL L2
ENSG00000213625 LEPROT -800328 sc-eQTL 4.46e-01 -0.0852 0.112 0.261 CD4_CTL L2
ENSG00000158966 CACHD1 150130 sc-eQTL 6.15e-01 -0.0291 0.0577 0.259 CD4_Naive L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.40e-01 -0.0119 0.059 0.259 CD4_Naive L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.10e-01 0.097 0.0954 0.259 CD4_Naive L2
ENSG00000158966 CACHD1 150130 sc-eQTL 2.41e-01 -0.0965 0.0821 0.259 CD4_TCM L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.68e-01 0.0112 0.0674 0.259 CD4_TCM L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.22e-01 0.0967 0.0975 0.259 CD4_TCM L2
ENSG00000158966 CACHD1 150130 sc-eQTL 9.66e-01 -0.00271 0.063 0.259 CD4_TEM L2
ENSG00000162434 JAK1 -447495 sc-eQTL 2.11e-01 -0.112 0.0893 0.259 CD4_TEM L2
ENSG00000213625 LEPROT -800328 sc-eQTL 2.69e-01 0.117 0.106 0.259 CD4_TEM L2
ENSG00000116678 LEPR -800393 sc-eQTL 1.44e-01 -0.144 0.0982 0.259 CD8_CTL L2
ENSG00000158966 CACHD1 150130 sc-eQTL 9.75e-01 -0.00137 0.0444 0.259 CD8_CTL L2
ENSG00000162434 JAK1 -447495 sc-eQTL 6.55e-01 0.0371 0.0828 0.259 CD8_CTL L2
ENSG00000213625 LEPROT -800328 sc-eQTL 2.08e-01 0.128 0.101 0.259 CD8_CTL L2
ENSG00000116678 LEPR -800393 sc-eQTL 6.37e-01 0.048 0.102 0.259 CD8_Naive L2
ENSG00000158966 CACHD1 150130 sc-eQTL 7.40e-01 0.0234 0.0705 0.259 CD8_Naive L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.81e-01 -0.0127 0.0848 0.259 CD8_Naive L2
ENSG00000213625 LEPROT -800328 sc-eQTL 5.93e-01 -0.0555 0.104 0.259 CD8_Naive L2
ENSG00000116678 LEPR -800393 sc-eQTL 6.05e-01 0.0533 0.103 0.255 CD8_TCM L2
ENSG00000158966 CACHD1 150130 sc-eQTL 3.97e-01 0.0471 0.0555 0.255 CD8_TCM L2
ENSG00000162434 JAK1 -447495 sc-eQTL 9.63e-01 0.00415 0.0895 0.255 CD8_TCM L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.54e-01 0.0205 0.112 0.255 CD8_TCM L2
ENSG00000116678 LEPR -800393 sc-eQTL 5.11e-01 -0.0624 0.0948 0.249 CD8_TEM L2
ENSG00000158966 CACHD1 150130 sc-eQTL 5.17e-01 0.0147 0.0227 0.249 CD8_TEM L2
ENSG00000162434 JAK1 -447495 sc-eQTL 2.32e-01 -0.128 0.107 0.249 CD8_TEM L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.33e-01 0.0234 0.111 0.249 CD8_TEM L2
ENSG00000162434 JAK1 -447495 sc-eQTL 6.85e-02 -0.165 0.0902 0.258 MAIT L2
ENSG00000162437 RAVER2 -124836 sc-eQTL 2.15e-01 -0.12 0.0966 0.258 MAIT L2
ENSG00000213625 LEPROT -800328 sc-eQTL 7.56e-01 -0.0325 0.105 0.258 MAIT L2
ENSG00000116678 LEPR -800393 sc-eQTL 9.96e-01 -0.00051 0.0969 0.262 NK_CD56bright L2
ENSG00000162434 JAK1 -447495 sc-eQTL 7.68e-01 -0.0196 0.0664 0.262 NK_CD56bright L2
ENSG00000213625 LEPROT -800328 sc-eQTL 1.99e-01 0.14 0.109 0.262 NK_CD56bright L2
ENSG00000116678 LEPR -800393 sc-eQTL 8.85e-01 0.0149 0.103 0.261 NK_CD56dim L2
ENSG00000162434 JAK1 -447495 sc-eQTL 2.66e-01 0.0599 0.0537 0.261 NK_CD56dim L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.42e-01 -0.104 0.109 0.261 NK_CD56dim L2
ENSG00000116678 LEPR -800393 sc-eQTL 5.84e-01 -0.0488 0.0891 0.272 NK_HLA L2
ENSG00000162434 JAK1 -447495 sc-eQTL 1.17e-01 0.109 0.069 0.272 NK_HLA L2
ENSG00000213625 LEPROT -800328 sc-eQTL 5.89e-01 0.0582 0.108 0.272 NK_HLA L2
ENSG00000116678 LEPR -800393 sc-eQTL 3.77e-01 0.0878 0.0991 0.261 NK_cytokine L2
ENSG00000162434 JAK1 -447495 sc-eQTL 5.33e-01 0.036 0.0577 0.261 NK_cytokine L2
ENSG00000213625 LEPROT -800328 sc-eQTL 6.13e-01 0.0532 0.105 0.261 NK_cytokine L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.11e-01 0.0215 0.0896 0.278 PB L2
ENSG00000213625 LEPROT -800328 sc-eQTL 8.02e-01 -0.0315 0.126 0.278 PB L2
ENSG00000162434 JAK1 -447495 sc-eQTL 5.01e-01 -0.0456 0.0676 0.257 Pro_T L2
ENSG00000162437 RAVER2 -124836 sc-eQTL 3.11e-01 -0.0905 0.0891 0.257 Pro_T L2
ENSG00000213625 LEPROT -800328 sc-eQTL 7.63e-01 -0.0319 0.105 0.257 Pro_T L2
ENSG00000158966 CACHD1 150130 sc-eQTL 1.78e-01 -0.107 0.079 0.259 Treg L2
ENSG00000162434 JAK1 -447495 sc-eQTL 9.32e-01 -0.00721 0.0846 0.259 Treg L2
ENSG00000213625 LEPROT -800328 sc-eQTL 4.73e-01 0.0787 0.11 0.259 Treg L2
ENSG00000116678 LEPR -800393 sc-eQTL 4.31e-02 0.209 0.102 0.249 cDC L2
ENSG00000162433 AK4 -527290 sc-eQTL 9.10e-01 -0.0103 0.0916 0.249 cDC L2
ENSG00000162434 JAK1 -447495 sc-eQTL 3.50e-01 -0.0798 0.0853 0.249 cDC L2
ENSG00000162437 RAVER2 -124836 sc-eQTL 6.62e-01 -0.0411 0.0939 0.249 cDC L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.28e-01 0.102 0.104 0.249 cDC L2
ENSG00000116678 LEPR -800393 sc-eQTL 7.79e-01 -0.0287 0.102 0.259 cMono_IL1B L2
ENSG00000162433 AK4 -527290 sc-eQTL 9.25e-02 -0.158 0.0932 0.259 cMono_IL1B L2
ENSG00000162434 JAK1 -447495 sc-eQTL 2.58e-01 0.0965 0.0851 0.259 cMono_IL1B L2
ENSG00000213625 LEPROT -800328 sc-eQTL 9.45e-01 0.00474 0.069 0.259 cMono_IL1B L2
ENSG00000116678 LEPR -800393 sc-eQTL 7.00e-01 -0.0385 0.0998 0.259 cMono_S100A L2
ENSG00000162433 AK4 -527290 sc-eQTL 5.96e-03 -0.258 0.093 0.259 cMono_S100A L2
ENSG00000162434 JAK1 -447495 sc-eQTL 3.89e-01 0.0753 0.0872 0.259 cMono_S100A L2
ENSG00000213625 LEPROT -800328 sc-eQTL 2.83e-01 0.0877 0.0815 0.259 cMono_S100A L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.06e-01 0.0303 0.123 0.239 gdT L2
ENSG00000162437 RAVER2 -124836 sc-eQTL 5.75e-01 0.0607 0.108 0.239 gdT L2
ENSG00000213625 LEPROT -800328 sc-eQTL 7.18e-01 0.0468 0.13 0.239 gdT L2
ENSG00000116678 LEPR -800393 sc-eQTL 9.48e-01 -0.00639 0.0978 0.26 intMono L2
ENSG00000162433 AK4 -527290 sc-eQTL 2.63e-01 -0.103 0.0919 0.26 intMono L2
ENSG00000162434 JAK1 -447495 sc-eQTL 2.34e-02 0.192 0.0841 0.26 intMono L2
ENSG00000213625 LEPROT -800328 sc-eQTL 4.37e-01 0.0638 0.082 0.26 intMono L2
ENSG00000116678 LEPR -800393 sc-eQTL 6.43e-01 -0.0453 0.0975 0.26 ncMono L2
ENSG00000162433 AK4 -527290 sc-eQTL 3.35e-01 -0.0839 0.0868 0.26 ncMono L2
ENSG00000162434 JAK1 -447495 sc-eQTL 8.60e-01 -0.0125 0.0704 0.26 ncMono L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.20e-01 -0.0994 0.0996 0.26 ncMono L2
ENSG00000116678 LEPR -800393 sc-eQTL 2.19e-01 -0.126 0.102 0.266 pDC L2
ENSG00000162433 AK4 -527290 sc-eQTL 2.23e-01 -0.0816 0.0666 0.266 pDC L2
ENSG00000162434 JAK1 -447495 sc-eQTL 6.03e-02 0.167 0.0884 0.266 pDC L2
ENSG00000162437 RAVER2 -124836 sc-eQTL 6.96e-01 0.0394 0.101 0.266 pDC L2
ENSG00000213625 LEPROT -800328 sc-eQTL 3.40e-01 0.106 0.111 0.266 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -447495 sc-eQTL 9.84e-01 -0.00163 0.0789 0.259 B_Memory LOneK1K
ENSG00000213625 LEPROT -800328 sc-eQTL 4.82e-01 -0.0714 0.101 0.259 B_Memory LOneK1K
ENSG00000162434 JAK1 -447495 sc-eQTL 6.39e-01 0.0357 0.076 0.259 B_Naive LOneK1K
ENSG00000213625 LEPROT -800328 sc-eQTL 8.86e-01 -0.0138 0.0962 0.259 B_Naive LOneK1K
ENSG00000116678 LEPR -800393 sc-eQTL 5.96e-01 -0.0531 0.1 0.259 CD14_Mono LOneK1K
ENSG00000162433 AK4 -527290 sc-eQTL 3.54e-03 -0.277 0.0939 0.259 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -447495 sc-eQTL 1.60e-01 0.113 0.0798 0.259 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -800328 sc-eQTL 3.36e-01 0.0647 0.067 0.259 CD14_Mono LOneK1K
ENSG00000116678 LEPR -800393 sc-eQTL 7.77e-01 -0.0283 0.1 0.261 CD16_Mono LOneK1K
ENSG00000162433 AK4 -527290 sc-eQTL 2.00e-01 -0.116 0.0902 0.261 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -447495 sc-eQTL 3.08e-01 0.0621 0.0608 0.261 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -800328 sc-eQTL 4.99e-01 -0.0574 0.0848 0.261 CD16_Mono LOneK1K
ENSG00000116678 LEPR -800393 sc-eQTL 6.33e-01 0.0481 0.101 0.261 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -447495 sc-eQTL 2.21e-01 0.0578 0.0471 0.261 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -800328 sc-eQTL 3.22e-01 -0.104 0.104 0.261 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162433 \N -527290 8.21e-07 5.7e-07 1.31e-07 4.04e-07 1.07e-07 2.12e-07 5.31e-07 1.54e-07 5.02e-07 2.43e-07 7.32e-07 3.84e-07 7.93e-07 1.23e-07 2.44e-07 2.89e-07 3.24e-07 4.11e-07 2.17e-07 1.78e-07 2.09e-07 3.95e-07 3.3e-07 1.71e-07 8.99e-07 2.56e-07 3.37e-07 3.18e-07 3.83e-07 4.9e-07 3.13e-07 5.35e-08 4.55e-08 1.54e-07 3.35e-07 1.36e-07 1.11e-07 1.11e-07 6.41e-08 2.28e-08 1.12e-07 4.95e-07 2.67e-08 5.64e-09 1.34e-07 1.44e-08 1.17e-07 1.24e-08 6.06e-08