logo

Genes within 1Mb (chr1:64557783:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 964372 sc-eQTL 6.53e-01 0.0955 0.212 0.05 CD4_CTL L2
ENSG00000142856 ITGB3BP 964062 sc-eQTL 2.91e-01 -0.229 0.216 0.05 CD4_CTL L2
ENSG00000158966 CACHD1 87654 sc-eQTL 3.02e-01 -0.0814 0.0787 0.05 CD4_CTL L2
ENSG00000162434 JAK1 -509971 sc-eQTL 4.11e-01 0.16 0.194 0.05 CD4_CTL L2
ENSG00000213625 LEPROT -862804 sc-eQTL 4.43e-01 -0.172 0.223 0.05 CD4_CTL L2
ENSG00000079739 PGM1 964372 sc-eQTL 8.03e-01 -0.0551 0.221 0.05 NK_HLA L2
ENSG00000116678 LEPR -862869 sc-eQTL 9.51e-01 -0.0114 0.184 0.05 NK_HLA L2
ENSG00000142856 ITGB3BP 964062 sc-eQTL 7.77e-01 -0.0609 0.214 0.05 NK_HLA L2
ENSG00000162434 JAK1 -509971 sc-eQTL 7.89e-01 -0.0383 0.143 0.05 NK_HLA L2
ENSG00000213625 LEPROT -862804 sc-eQTL 8.28e-01 -0.0483 0.222 0.05 NK_HLA L2
ENSG00000079739 PGM1 964372 sc-eQTL 9.43e-01 0.0138 0.193 0.05 Pro_T L2
ENSG00000142856 ITGB3BP 964062 sc-eQTL 1.73e-01 -0.235 0.172 0.05 Pro_T L2
ENSG00000162434 JAK1 -509971 sc-eQTL 6.14e-01 -0.0688 0.136 0.05 Pro_T L2
ENSG00000162437 RAVER2 -187312 sc-eQTL 5.88e-01 0.0976 0.18 0.05 Pro_T L2
ENSG00000213625 LEPROT -862804 sc-eQTL 6.91e-01 -0.0844 0.212 0.05 Pro_T L2
ENSG00000079739 PGM1 964372 sc-eQTL 1.75e-01 -0.316 0.232 0.051 pDC L2
ENSG00000116678 LEPR -862869 sc-eQTL 1.16e-01 -0.339 0.215 0.051 pDC L2
ENSG00000142856 ITGB3BP 964062 sc-eQTL 3.17e-01 -0.234 0.233 0.051 pDC L2
ENSG00000162433 AK4 -589766 sc-eQTL 1.32e-01 0.212 0.14 0.051 pDC L2
ENSG00000162434 JAK1 -509971 sc-eQTL 2.30e-01 -0.226 0.187 0.051 pDC L2
ENSG00000162437 RAVER2 -187312 sc-eQTL 8.33e-01 0.0448 0.212 0.051 pDC L2
ENSG00000213625 LEPROT -862804 sc-eQTL 5.32e-02 0.45 0.231 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142856 ITGB3BP 964062 eQTL 0.0395 -0.131 0.0636 0.0 0.0 0.0569
ENSG00000162434 JAK1 -408766 eQTL 0.0184 0.0753 0.0319 0.0 0.0 0.0569

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -408766 1.05e-06 6.78e-07 2.81e-07 4.43e-07 1.18e-07 3.28e-07 6.09e-07 2.71e-07 7.08e-07 3.05e-07 9.47e-07 5.28e-07 9.65e-07 1.57e-07 3.56e-07 4.14e-07 6.37e-07 4.44e-07 3.3e-07 3.06e-07 2.53e-07 5.76e-07 4.74e-07 3.24e-07 1.02e-06 2.37e-07 4.83e-07 3.78e-07 5.9e-07 7.79e-07 3.66e-07 3.75e-08 9.36e-08 2.06e-07 3.63e-07 2.78e-07 1.83e-07 1.42e-07 8.52e-08 8.29e-09 1.45e-07 6.8e-07 6.28e-08 1.11e-08 1.8e-07 4.23e-08 1.97e-07 8.74e-08 7.91e-08