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Genes within 1Mb (chr1:63833589:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 240178 sc-eQTL 3.87e-01 -0.159 0.184 0.052 DC L1
ENSG00000088035 ALG6 466014 sc-eQTL 6.67e-02 0.347 0.188 0.052 DC L1
ENSG00000142856 ITGB3BP 239868 sc-eQTL 4.22e-01 0.171 0.212 0.052 DC L1
ENSG00000162437 RAVER2 -911506 sc-eQTL 1.61e-01 0.252 0.179 0.052 DC L1
ENSG00000203965 EFCAB7 310217 sc-eQTL 9.90e-01 0.00236 0.185 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 240178 sc-eQTL 3.61e-01 -0.198 0.217 0.05 CD4_CTL L2
ENSG00000088035 ALG6 466014 sc-eQTL 7.26e-01 0.0805 0.229 0.05 CD4_CTL L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 6.95e-01 0.0872 0.222 0.05 CD4_CTL L2
ENSG00000158966 CACHD1 -636540 sc-eQTL 6.46e-01 -0.0371 0.0806 0.05 CD4_CTL L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 6.05e-01 0.109 0.211 0.05 CD4_CTL L2
ENSG00000079739 PGM1 240178 sc-eQTL 1.31e-01 -0.314 0.207 0.051 CD8_TCM L2
ENSG00000088035 ALG6 466014 sc-eQTL 7.52e-01 -0.0667 0.211 0.051 CD8_TCM L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 1.97e-01 0.264 0.204 0.051 CD8_TCM L2
ENSG00000158966 CACHD1 -636540 sc-eQTL 2.41e-01 -0.126 0.107 0.051 CD8_TCM L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 1.83e-01 -0.278 0.208 0.051 CD8_TCM L2
ENSG00000079739 PGM1 240178 sc-eQTL 4.14e-01 0.202 0.247 0.052 PB L2
ENSG00000088035 ALG6 466014 sc-eQTL 2.57e-01 0.294 0.258 0.052 PB L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 7.36e-01 -0.0818 0.242 0.052 PB L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 1.29e-01 0.402 0.263 0.052 PB L2
ENSG00000079739 PGM1 240178 sc-eQTL 9.26e-01 0.0177 0.19 0.05 Pro_T L2
ENSG00000088035 ALG6 466014 sc-eQTL 9.82e-01 0.0044 0.193 0.05 Pro_T L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 9.20e-01 0.0171 0.17 0.05 Pro_T L2
ENSG00000162437 RAVER2 -911506 sc-eQTL 5.23e-01 -0.113 0.177 0.05 Pro_T L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 1.15e-01 -0.311 0.197 0.05 Pro_T L2
ENSG00000079739 PGM1 240178 sc-eQTL 8.07e-01 -0.0474 0.194 0.054 cDC L2
ENSG00000088035 ALG6 466014 sc-eQTL 5.86e-03 0.538 0.193 0.054 cDC L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 8.34e-01 0.0448 0.213 0.054 cDC L2
ENSG00000162437 RAVER2 -911506 sc-eQTL 1.17e-01 0.285 0.181 0.054 cDC L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 9.82e-01 -0.00382 0.171 0.054 cDC L2
ENSG00000079739 PGM1 240178 sc-eQTL 3.43e-01 -0.209 0.219 0.061 gdT L2
ENSG00000088035 ALG6 466014 sc-eQTL 5.39e-01 0.144 0.234 0.061 gdT L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 3.65e-02 0.485 0.23 0.061 gdT L2
ENSG00000162437 RAVER2 -911506 sc-eQTL 7.97e-01 -0.0532 0.206 0.061 gdT L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 7.22e-01 -0.0818 0.229 0.061 gdT L2
ENSG00000079739 PGM1 240178 sc-eQTL 2.55e-02 0.464 0.206 0.051 intMono L2
ENSG00000088035 ALG6 466014 sc-eQTL 6.43e-01 0.0902 0.194 0.051 intMono L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 7.46e-01 0.0679 0.209 0.051 intMono L2
ENSG00000079739 PGM1 240178 sc-eQTL 2.04e-01 -0.273 0.214 0.056 pDC L2
ENSG00000088035 ALG6 466014 sc-eQTL 7.69e-01 0.0618 0.21 0.056 pDC L2
ENSG00000142856 ITGB3BP 239868 sc-eQTL 6.35e-01 0.102 0.216 0.056 pDC L2
ENSG00000162437 RAVER2 -911506 sc-eQTL 8.47e-01 -0.0379 0.196 0.056 pDC L2
ENSG00000203965 EFCAB7 310217 sc-eQTL 7.24e-01 0.0675 0.191 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000203965 EFCAB7 310217 eQTL 4.39e-02 0.0907 0.0449 0.0 0.0 0.0736

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 \N 240178 4.32e-06 5.83e-06 4.93e-07 2.68e-06 4.59e-07 8.45e-07 9.38e-06 4.11e-07 4.88e-06 1.66e-06 6.86e-06 3.04e-06 1.14e-05 3.17e-06 1.23e-06 2.48e-06 9.43e-07 3.71e-06 1.08e-06 1.09e-06 1.57e-06 4.14e-06 4.52e-06 5.72e-07 5.93e-06 1.27e-06 1.75e-06 1.84e-06 4.34e-06 2.29e-06 3.39e-06 4.33e-07 2.29e-07 1.84e-06 1.93e-06 9.09e-07 9.21e-07 4.02e-07 1.11e-06 2.31e-07 2.17e-07 1.37e-05 4.46e-07 1.8e-07 1.66e-07 5.51e-07 8.08e-07 5.95e-08 1.04e-07