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Genes within 1Mb (chr1:63430179:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -163232 sc-eQTL 3.06e-03 -0.23 0.0769 0.652 B L1
ENSG00000088035 ALG6 62604 sc-eQTL 3.77e-01 0.072 0.0812 0.652 B L1
ENSG00000116641 DOCK7 741793 sc-eQTL 5.85e-01 -0.0445 0.0813 0.652 B L1
ENSG00000125703 ATG4C 646047 sc-eQTL 8.32e-01 0.012 0.0565 0.652 B L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.38e-19 -0.736 0.0744 0.652 B L1
ENSG00000162607 USP1 993882 sc-eQTL 3.94e-01 -0.0666 0.078 0.652 B L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 1.72e-05 -0.388 0.0882 0.652 B L1
ENSG00000079739 PGM1 -163232 sc-eQTL 3.10e-01 -0.0685 0.0673 0.652 CD4T L1
ENSG00000088035 ALG6 62604 sc-eQTL 9.15e-03 0.193 0.0733 0.652 CD4T L1
ENSG00000116641 DOCK7 741793 sc-eQTL 8.97e-01 0.00975 0.0754 0.652 CD4T L1
ENSG00000125703 ATG4C 646047 sc-eQTL 9.51e-01 0.00375 0.0609 0.652 CD4T L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.79e-15 -0.633 0.0746 0.652 CD4T L1
ENSG00000162607 USP1 993882 sc-eQTL 1.40e-01 -0.0871 0.0588 0.652 CD4T L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 1.29e-03 -0.247 0.0757 0.652 CD4T L1
ENSG00000079739 PGM1 -163232 sc-eQTL 1.31e-01 -0.112 0.0736 0.652 CD8T L1
ENSG00000088035 ALG6 62604 sc-eQTL 9.22e-01 0.00798 0.0816 0.652 CD8T L1
ENSG00000116641 DOCK7 741793 sc-eQTL 5.59e-01 -0.0483 0.0826 0.652 CD8T L1
ENSG00000125703 ATG4C 646047 sc-eQTL 4.16e-01 0.0639 0.0784 0.652 CD8T L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.10e-14 -0.624 0.0766 0.652 CD8T L1
ENSG00000162607 USP1 993882 sc-eQTL 8.87e-01 -0.00973 0.0684 0.652 CD8T L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 6.12e-03 -0.238 0.086 0.652 CD8T L1
ENSG00000079739 PGM1 -163232 sc-eQTL 4.55e-01 0.0612 0.0818 0.658 DC L1
ENSG00000088035 ALG6 62604 sc-eQTL 4.91e-02 0.166 0.0837 0.658 DC L1
ENSG00000116641 DOCK7 741793 sc-eQTL 9.77e-01 -0.00255 0.0866 0.658 DC L1
ENSG00000125703 ATG4C 646047 sc-eQTL 1.61e-01 -0.0948 0.0675 0.658 DC L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.89e-03 -0.271 0.0928 0.658 DC L1
ENSG00000162607 USP1 993882 sc-eQTL 6.30e-01 0.0398 0.0827 0.658 DC L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 2.65e-03 -0.245 0.0806 0.658 DC L1
ENSG00000079739 PGM1 -163232 sc-eQTL 5.34e-01 0.0504 0.0809 0.652 Mono L1
ENSG00000088035 ALG6 62604 sc-eQTL 1.71e-02 0.2 0.0834 0.652 Mono L1
ENSG00000116641 DOCK7 741793 sc-eQTL 2.91e-01 -0.0863 0.0815 0.652 Mono L1
ENSG00000125703 ATG4C 646047 sc-eQTL 5.11e-01 0.0364 0.0552 0.652 Mono L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.04e-06 -0.398 0.0829 0.652 Mono L1
ENSG00000162607 USP1 993882 sc-eQTL 6.49e-01 -0.0326 0.0717 0.652 Mono L1
ENSG00000079739 PGM1 -163232 sc-eQTL 5.51e-01 -0.0403 0.0675 0.652 NK L1
ENSG00000088035 ALG6 62604 sc-eQTL 1.57e-01 0.112 0.0788 0.652 NK L1
ENSG00000116641 DOCK7 741793 sc-eQTL 9.30e-01 -0.0057 0.0652 0.652 NK L1
ENSG00000125703 ATG4C 646047 sc-eQTL 6.75e-01 -0.0294 0.07 0.652 NK L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 4.43e-05 -0.349 0.0836 0.652 NK L1
ENSG00000162607 USP1 993882 sc-eQTL 8.90e-01 -0.0108 0.0778 0.652 NK L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 9.72e-01 -0.00333 0.0945 0.652 NK L1
ENSG00000079739 PGM1 -163232 sc-eQTL 5.43e-01 -0.0476 0.0782 0.652 Other_T L1
ENSG00000088035 ALG6 62604 sc-eQTL 5.40e-01 0.0483 0.0785 0.652 Other_T L1
ENSG00000116641 DOCK7 741793 sc-eQTL 6.73e-01 -0.0339 0.0802 0.652 Other_T L1
ENSG00000125703 ATG4C 646047 sc-eQTL 5.21e-02 0.134 0.0688 0.652 Other_T L1
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.59e-01 -0.0866 0.0613 0.652 Other_T L1
ENSG00000162607 USP1 993882 sc-eQTL 8.16e-01 -0.0124 0.0534 0.652 Other_T L1
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.40e-01 -0.0907 0.0948 0.652 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -163232 sc-eQTL 4.63e-01 -0.0775 0.105 0.666 B_Activated L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.59e-01 -0.0447 0.101 0.666 B_Activated L2
ENSG00000116641 DOCK7 741793 sc-eQTL 5.18e-01 0.0609 0.094 0.666 B_Activated L2
ENSG00000125703 ATG4C 646047 sc-eQTL 5.30e-01 0.0622 0.0989 0.666 B_Activated L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.55e-02 -0.232 0.0951 0.666 B_Activated L2
ENSG00000162607 USP1 993882 sc-eQTL 6.11e-01 0.0533 0.105 0.666 B_Activated L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 6.98e-01 0.0356 0.0915 0.666 B_Activated L2
ENSG00000079739 PGM1 -163232 sc-eQTL 8.08e-01 -0.0225 0.0921 0.652 B_Intermediate L2
ENSG00000088035 ALG6 62604 sc-eQTL 7.85e-01 0.0256 0.0935 0.652 B_Intermediate L2
ENSG00000116641 DOCK7 741793 sc-eQTL 6.32e-01 0.0428 0.0893 0.652 B_Intermediate L2
ENSG00000125703 ATG4C 646047 sc-eQTL 3.66e-01 0.0684 0.0755 0.652 B_Intermediate L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.59e-05 -0.372 0.0864 0.652 B_Intermediate L2
ENSG00000162607 USP1 993882 sc-eQTL 4.18e-01 -0.073 0.0898 0.652 B_Intermediate L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.45e-03 -0.259 0.0875 0.652 B_Intermediate L2
ENSG00000079739 PGM1 -163232 sc-eQTL 3.03e-02 -0.197 0.0902 0.649 B_Memory L2
ENSG00000088035 ALG6 62604 sc-eQTL 7.49e-01 -0.0297 0.0927 0.649 B_Memory L2
ENSG00000116641 DOCK7 741793 sc-eQTL 3.50e-02 -0.183 0.086 0.649 B_Memory L2
ENSG00000125703 ATG4C 646047 sc-eQTL 4.82e-01 0.0582 0.0825 0.649 B_Memory L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.15e-03 -0.304 0.0922 0.649 B_Memory L2
ENSG00000162607 USP1 993882 sc-eQTL 3.07e-01 -0.0975 0.0951 0.649 B_Memory L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 2.03e-02 -0.217 0.0927 0.649 B_Memory L2
ENSG00000079739 PGM1 -163232 sc-eQTL 2.70e-02 -0.205 0.0919 0.652 B_Naive1 L2
ENSG00000088035 ALG6 62604 sc-eQTL 9.02e-01 0.0115 0.0933 0.652 B_Naive1 L2
ENSG00000116641 DOCK7 741793 sc-eQTL 7.27e-01 0.0313 0.0894 0.652 B_Naive1 L2
ENSG00000125703 ATG4C 646047 sc-eQTL 4.39e-01 -0.0533 0.0688 0.652 B_Naive1 L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.48e-13 -0.635 0.0803 0.652 B_Naive1 L2
ENSG00000162607 USP1 993882 sc-eQTL 6.17e-01 -0.0402 0.0803 0.652 B_Naive1 L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 4.51e-06 -0.437 0.0928 0.652 B_Naive1 L2
ENSG00000079739 PGM1 -163232 sc-eQTL 7.75e-02 -0.16 0.09 0.65 B_Naive2 L2
ENSG00000088035 ALG6 62604 sc-eQTL 7.86e-01 0.0257 0.0945 0.65 B_Naive2 L2
ENSG00000116641 DOCK7 741793 sc-eQTL 9.80e-01 0.00231 0.0909 0.65 B_Naive2 L2
ENSG00000125703 ATG4C 646047 sc-eQTL 4.59e-01 0.0648 0.0874 0.65 B_Naive2 L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 4.70e-12 -0.621 0.0846 0.65 B_Naive2 L2
ENSG00000162607 USP1 993882 sc-eQTL 9.08e-01 0.0104 0.0903 0.65 B_Naive2 L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 9.72e-02 0.156 0.0938 0.65 B_Naive2 L2
ENSG00000079739 PGM1 -163232 sc-eQTL 8.02e-01 0.0229 0.0913 0.652 CD4_CTL L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.35e-01 -0.0459 0.0965 0.652 CD4_CTL L2
ENSG00000116641 DOCK7 741793 sc-eQTL 9.75e-01 0.00264 0.0844 0.652 CD4_CTL L2
ENSG00000125703 ATG4C 646047 sc-eQTL 5.87e-01 -0.0475 0.0873 0.652 CD4_CTL L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.24e-01 -0.113 0.0931 0.652 CD4_CTL L2
ENSG00000162607 USP1 993882 sc-eQTL 4.01e-01 -0.0747 0.0887 0.652 CD4_CTL L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 7.18e-01 -0.0321 0.0887 0.652 CD4_CTL L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.03e-01 -0.00928 0.0759 0.652 CD4_Naive L2
ENSG00000088035 ALG6 62604 sc-eQTL 8.60e-03 0.215 0.0811 0.652 CD4_Naive L2
ENSG00000116641 DOCK7 741793 sc-eQTL 5.96e-01 0.043 0.081 0.652 CD4_Naive L2
ENSG00000125703 ATG4C 646047 sc-eQTL 6.93e-01 0.0283 0.0716 0.652 CD4_Naive L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 6.52e-13 -0.593 0.0774 0.652 CD4_Naive L2
ENSG00000162607 USP1 993882 sc-eQTL 1.19e-01 -0.104 0.0665 0.652 CD4_Naive L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 6.67e-02 -0.159 0.0862 0.652 CD4_Naive L2
ENSG00000079739 PGM1 -163232 sc-eQTL 7.01e-02 -0.141 0.0776 0.652 CD4_TCM L2
ENSG00000088035 ALG6 62604 sc-eQTL 9.43e-01 -0.00648 0.0908 0.652 CD4_TCM L2
ENSG00000116641 DOCK7 741793 sc-eQTL 6.64e-01 -0.035 0.0804 0.652 CD4_TCM L2
ENSG00000125703 ATG4C 646047 sc-eQTL 1.40e-01 -0.115 0.078 0.652 CD4_TCM L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 8.90e-08 -0.478 0.0863 0.652 CD4_TCM L2
ENSG00000162607 USP1 993882 sc-eQTL 6.24e-01 -0.0371 0.0757 0.652 CD4_TCM L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 1.56e-04 -0.333 0.0864 0.652 CD4_TCM L2
ENSG00000079739 PGM1 -163232 sc-eQTL 4.05e-01 0.0764 0.0916 0.652 CD4_TEM L2
ENSG00000088035 ALG6 62604 sc-eQTL 4.75e-01 0.0659 0.0921 0.652 CD4_TEM L2
ENSG00000116641 DOCK7 741793 sc-eQTL 3.91e-01 0.077 0.0897 0.652 CD4_TEM L2
ENSG00000125703 ATG4C 646047 sc-eQTL 5.48e-01 0.0524 0.0872 0.652 CD4_TEM L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 8.21e-04 -0.298 0.0877 0.652 CD4_TEM L2
ENSG00000162607 USP1 993882 sc-eQTL 5.39e-03 -0.236 0.0838 0.652 CD4_TEM L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 1.67e-01 -0.129 0.0929 0.652 CD4_TEM L2
ENSG00000079739 PGM1 -163232 sc-eQTL 7.71e-01 0.0244 0.0836 0.652 CD8_CTL L2
ENSG00000088035 ALG6 62604 sc-eQTL 4.83e-01 0.0624 0.0888 0.652 CD8_CTL L2
ENSG00000116641 DOCK7 741793 sc-eQTL 6.67e-01 -0.0363 0.0844 0.652 CD8_CTL L2
ENSG00000125703 ATG4C 646047 sc-eQTL 2.78e-01 0.0973 0.0896 0.652 CD8_CTL L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.39e-03 -0.271 0.0915 0.652 CD8_CTL L2
ENSG00000162607 USP1 993882 sc-eQTL 6.08e-01 0.0429 0.0836 0.652 CD8_CTL L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 9.47e-01 -0.00633 0.0957 0.652 CD8_CTL L2
ENSG00000079739 PGM1 -163232 sc-eQTL 3.41e-01 -0.0812 0.085 0.652 CD8_Naive L2
ENSG00000088035 ALG6 62604 sc-eQTL 3.52e-01 0.0821 0.088 0.652 CD8_Naive L2
ENSG00000116641 DOCK7 741793 sc-eQTL 8.82e-01 0.0136 0.0911 0.652 CD8_Naive L2
ENSG00000125703 ATG4C 646047 sc-eQTL 9.29e-01 0.00785 0.0875 0.652 CD8_Naive L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.32e-10 -0.532 0.0807 0.652 CD8_Naive L2
ENSG00000162607 USP1 993882 sc-eQTL 2.41e-01 -0.0878 0.0746 0.652 CD8_Naive L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 8.60e-03 -0.218 0.0821 0.652 CD8_Naive L2
ENSG00000079739 PGM1 -163232 sc-eQTL 1.82e-01 -0.122 0.0907 0.655 CD8_TCM L2
ENSG00000088035 ALG6 62604 sc-eQTL 1.21e-01 -0.143 0.0917 0.655 CD8_TCM L2
ENSG00000116641 DOCK7 741793 sc-eQTL 8.27e-01 -0.0197 0.09 0.655 CD8_TCM L2
ENSG00000125703 ATG4C 646047 sc-eQTL 5.48e-01 -0.0554 0.092 0.655 CD8_TCM L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 9.40e-04 -0.292 0.0869 0.655 CD8_TCM L2
ENSG00000162607 USP1 993882 sc-eQTL 4.66e-01 0.0628 0.086 0.655 CD8_TCM L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 2.99e-01 -0.0947 0.0909 0.655 CD8_TCM L2
ENSG00000079739 PGM1 -163232 sc-eQTL 2.97e-01 -0.0983 0.094 0.644 CD8_TEM L2
ENSG00000088035 ALG6 62604 sc-eQTL 8.45e-01 -0.0185 0.0946 0.644 CD8_TEM L2
ENSG00000116641 DOCK7 741793 sc-eQTL 3.71e-01 -0.082 0.0916 0.644 CD8_TEM L2
ENSG00000125703 ATG4C 646047 sc-eQTL 9.99e-02 0.145 0.0876 0.644 CD8_TEM L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 8.72e-04 -0.314 0.0928 0.644 CD8_TEM L2
ENSG00000162607 USP1 993882 sc-eQTL 9.98e-01 0.000186 0.0911 0.644 CD8_TEM L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.79e-01 -0.0815 0.0924 0.644 CD8_TEM L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.09e-01 0.0103 0.0898 0.652 MAIT L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.55e-01 -0.0398 0.0889 0.652 MAIT L2
ENSG00000116641 DOCK7 741793 sc-eQTL 9.96e-01 -0.000432 0.0852 0.652 MAIT L2
ENSG00000125703 ATG4C 646047 sc-eQTL 8.90e-02 0.152 0.0892 0.652 MAIT L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 4.30e-03 -0.255 0.0883 0.652 MAIT L2
ENSG00000162607 USP1 993882 sc-eQTL 1.83e-01 -0.119 0.0889 0.652 MAIT L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.61e-01 -0.0848 0.0925 0.652 MAIT L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.50e-01 -0.00558 0.0887 0.656 NK_CD56bright L2
ENSG00000088035 ALG6 62604 sc-eQTL 8.81e-02 0.155 0.0903 0.656 NK_CD56bright L2
ENSG00000116641 DOCK7 741793 sc-eQTL 9.82e-01 -0.0018 0.0788 0.656 NK_CD56bright L2
ENSG00000125703 ATG4C 646047 sc-eQTL 8.16e-01 -0.0205 0.088 0.656 NK_CD56bright L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 6.14e-02 -0.171 0.0909 0.656 NK_CD56bright L2
ENSG00000162607 USP1 993882 sc-eQTL 7.48e-01 -0.0305 0.0945 0.656 NK_CD56bright L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 7.64e-02 -0.16 0.0897 0.656 NK_CD56bright L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.00e-01 -0.00881 0.0702 0.653 NK_CD56dim L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.08e-01 0.0458 0.089 0.653 NK_CD56dim L2
ENSG00000116641 DOCK7 741793 sc-eQTL 4.10e-01 -0.0639 0.0774 0.653 NK_CD56dim L2
ENSG00000125703 ATG4C 646047 sc-eQTL 1.26e-01 -0.12 0.0783 0.653 NK_CD56dim L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.19e-02 -0.204 0.0885 0.653 NK_CD56dim L2
ENSG00000162607 USP1 993882 sc-eQTL 9.16e-01 -0.00918 0.0869 0.653 NK_CD56dim L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 6.36e-01 0.0458 0.0967 0.653 NK_CD56dim L2
ENSG00000079739 PGM1 -163232 sc-eQTL 3.38e-01 -0.0924 0.0962 0.662 NK_HLA L2
ENSG00000088035 ALG6 62604 sc-eQTL 3.08e-01 0.102 0.0998 0.662 NK_HLA L2
ENSG00000116641 DOCK7 741793 sc-eQTL 8.63e-01 0.0132 0.0765 0.662 NK_HLA L2
ENSG00000125703 ATG4C 646047 sc-eQTL 9.53e-01 0.00527 0.089 0.662 NK_HLA L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.46e-02 -0.209 0.0922 0.662 NK_HLA L2
ENSG00000162607 USP1 993882 sc-eQTL 8.84e-01 -0.0143 0.0977 0.662 NK_HLA L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 5.74e-01 0.0501 0.0889 0.662 NK_HLA L2
ENSG00000079739 PGM1 -163232 sc-eQTL 4.08e-01 0.0632 0.0762 0.653 NK_cytokine L2
ENSG00000088035 ALG6 62604 sc-eQTL 9.55e-01 0.00489 0.0862 0.653 NK_cytokine L2
ENSG00000116641 DOCK7 741793 sc-eQTL 7.55e-01 0.025 0.0798 0.653 NK_cytokine L2
ENSG00000125703 ATG4C 646047 sc-eQTL 4.72e-01 0.0588 0.0816 0.653 NK_cytokine L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.31e-03 -0.269 0.0825 0.653 NK_cytokine L2
ENSG00000162607 USP1 993882 sc-eQTL 8.81e-01 0.0133 0.089 0.653 NK_cytokine L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.07e-01 0.092 0.0899 0.653 NK_cytokine L2
ENSG00000079739 PGM1 -163232 sc-eQTL 1.65e-01 -0.167 0.119 0.644 PB L2
ENSG00000088035 ALG6 62604 sc-eQTL 4.91e-01 0.0871 0.126 0.644 PB L2
ENSG00000116641 DOCK7 741793 sc-eQTL 7.14e-01 0.0496 0.135 0.644 PB L2
ENSG00000125703 ATG4C 646047 sc-eQTL 8.53e-01 0.0219 0.118 0.644 PB L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 8.15e-03 -0.307 0.114 0.644 PB L2
ENSG00000162607 USP1 993882 sc-eQTL 4.05e-02 0.238 0.115 0.644 PB L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 4.93e-03 -0.357 0.125 0.644 PB L2
ENSG00000079739 PGM1 -163232 sc-eQTL 1.44e-01 -0.123 0.0837 0.65 Pro_T L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.56e-01 0.0382 0.0856 0.65 Pro_T L2
ENSG00000116641 DOCK7 741793 sc-eQTL 7.61e-02 -0.152 0.0853 0.65 Pro_T L2
ENSG00000125703 ATG4C 646047 sc-eQTL 5.13e-02 -0.146 0.0745 0.65 Pro_T L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.41e-04 0.283 0.0728 0.65 Pro_T L2
ENSG00000162607 USP1 993882 sc-eQTL 5.74e-01 -0.0292 0.0518 0.65 Pro_T L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 4.31e-01 0.0691 0.0875 0.65 Pro_T L2
ENSG00000079739 PGM1 -163232 sc-eQTL 3.33e-01 -0.0858 0.0884 0.652 Treg L2
ENSG00000088035 ALG6 62604 sc-eQTL 3.00e-01 0.0981 0.0945 0.652 Treg L2
ENSG00000116641 DOCK7 741793 sc-eQTL 9.76e-01 -0.00263 0.0869 0.652 Treg L2
ENSG00000125703 ATG4C 646047 sc-eQTL 8.42e-02 0.153 0.0882 0.652 Treg L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.07e-01 -0.117 0.0926 0.652 Treg L2
ENSG00000162607 USP1 993882 sc-eQTL 7.33e-01 -0.0307 0.0899 0.652 Treg L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 1.45e-01 -0.129 0.0885 0.652 Treg L2
ENSG00000079739 PGM1 -163232 sc-eQTL 6.85e-01 -0.0359 0.0884 0.663 cDC L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.10e-01 0.0458 0.0897 0.663 cDC L2
ENSG00000116641 DOCK7 741793 sc-eQTL 1.00e+00 -4.44e-05 0.0881 0.663 cDC L2
ENSG00000125703 ATG4C 646047 sc-eQTL 7.50e-02 -0.136 0.0758 0.663 cDC L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.04e-04 -0.344 0.0935 0.663 cDC L2
ENSG00000162607 USP1 993882 sc-eQTL 6.03e-01 -0.0449 0.0862 0.663 cDC L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 4.62e-01 -0.0573 0.0778 0.663 cDC L2
ENSG00000079739 PGM1 -163232 sc-eQTL 4.33e-02 0.169 0.0831 0.652 cMono_IL1B L2
ENSG00000088035 ALG6 62604 sc-eQTL 2.30e-01 0.101 0.0837 0.652 cMono_IL1B L2
ENSG00000116641 DOCK7 741793 sc-eQTL 2.31e-01 -0.106 0.0882 0.652 cMono_IL1B L2
ENSG00000125703 ATG4C 646047 sc-eQTL 9.44e-01 0.0044 0.0623 0.652 cMono_IL1B L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 7.56e-07 -0.424 0.0832 0.652 cMono_IL1B L2
ENSG00000162607 USP1 993882 sc-eQTL 6.52e-01 0.0351 0.0777 0.652 cMono_IL1B L2
ENSG00000079739 PGM1 -163232 sc-eQTL 6.29e-01 -0.0449 0.0929 0.652 cMono_S100A L2
ENSG00000088035 ALG6 62604 sc-eQTL 8.98e-02 0.159 0.0936 0.652 cMono_S100A L2
ENSG00000116641 DOCK7 741793 sc-eQTL 6.20e-01 0.0433 0.0873 0.652 cMono_S100A L2
ENSG00000125703 ATG4C 646047 sc-eQTL 2.24e-01 0.0919 0.0754 0.652 cMono_S100A L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.13e-02 -0.215 0.084 0.652 cMono_S100A L2
ENSG00000162607 USP1 993882 sc-eQTL 8.63e-02 -0.15 0.0872 0.652 cMono_S100A L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.98e-01 -0.00019 0.0957 0.664 gdT L2
ENSG00000088035 ALG6 62604 sc-eQTL 9.32e-01 0.00867 0.102 0.664 gdT L2
ENSG00000116641 DOCK7 741793 sc-eQTL 8.00e-01 0.0255 0.1 0.664 gdT L2
ENSG00000125703 ATG4C 646047 sc-eQTL 3.62e-01 0.0872 0.0954 0.664 gdT L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 5.14e-01 -0.0664 0.101 0.664 gdT L2
ENSG00000162607 USP1 993882 sc-eQTL 9.30e-01 -0.00847 0.0961 0.664 gdT L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 7.06e-01 -0.0378 0.0999 0.664 gdT L2
ENSG00000079739 PGM1 -163232 sc-eQTL 1.37e-01 0.139 0.0929 0.653 intMono L2
ENSG00000088035 ALG6 62604 sc-eQTL 7.08e-01 0.0326 0.0869 0.653 intMono L2
ENSG00000116641 DOCK7 741793 sc-eQTL 7.05e-01 0.0336 0.0888 0.653 intMono L2
ENSG00000125703 ATG4C 646047 sc-eQTL 7.35e-01 0.0288 0.0848 0.653 intMono L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 6.80e-04 -0.313 0.0908 0.653 intMono L2
ENSG00000162607 USP1 993882 sc-eQTL 7.12e-01 -0.0351 0.095 0.653 intMono L2
ENSG00000079739 PGM1 -163232 sc-eQTL 4.80e-01 -0.0596 0.0842 0.654 ncMono L2
ENSG00000088035 ALG6 62604 sc-eQTL 6.57e-01 0.0411 0.0926 0.654 ncMono L2
ENSG00000116641 DOCK7 741793 sc-eQTL 1.47e-01 -0.132 0.0907 0.654 ncMono L2
ENSG00000125703 ATG4C 646047 sc-eQTL 6.25e-01 -0.0417 0.0851 0.654 ncMono L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 6.94e-01 -0.0351 0.0891 0.654 ncMono L2
ENSG00000162607 USP1 993882 sc-eQTL 4.84e-01 -0.0638 0.0909 0.654 ncMono L2
ENSG00000079739 PGM1 -163232 sc-eQTL 9.31e-01 -0.00868 0.101 0.658 pDC L2
ENSG00000088035 ALG6 62604 sc-eQTL 1.06e-01 0.158 0.0973 0.658 pDC L2
ENSG00000116641 DOCK7 741793 sc-eQTL 6.34e-01 -0.0477 0.1 0.658 pDC L2
ENSG00000125703 ATG4C 646047 sc-eQTL 2.60e-01 0.101 0.0895 0.658 pDC L2
ENSG00000142856 ITGB3BP -163542 sc-eQTL 2.60e-01 -0.114 0.1 0.658 pDC L2
ENSG00000162607 USP1 993882 sc-eQTL 4.35e-01 0.0803 0.103 0.658 pDC L2
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.04e-02 -0.192 0.0879 0.658 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -163232 sc-eQTL 3.71e-02 -0.181 0.0862 0.652 B_Memory LOneK1K
ENSG00000088035 ALG6 62604 sc-eQTL 9.76e-01 0.00289 0.0963 0.652 B_Memory LOneK1K
ENSG00000116641 DOCK7 741793 sc-eQTL 7.21e-01 -0.0299 0.0836 0.652 B_Memory LOneK1K
ENSG00000125703 ATG4C 646047 sc-eQTL 3.30e-01 0.0658 0.0674 0.652 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -163542 sc-eQTL 5.05e-08 -0.468 0.0828 0.652 B_Memory LOneK1K
ENSG00000162607 USP1 993882 sc-eQTL 1.93e-01 -0.112 0.0859 0.652 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -93193 sc-eQTL 2.05e-04 -0.339 0.0896 0.652 B_Memory LOneK1K
ENSG00000079739 PGM1 -163232 sc-eQTL 4.82e-03 -0.253 0.0886 0.652 B_Naive LOneK1K
ENSG00000088035 ALG6 62604 sc-eQTL 6.18e-01 0.0465 0.093 0.652 B_Naive LOneK1K
ENSG00000116641 DOCK7 741793 sc-eQTL 9.14e-01 -0.00936 0.0868 0.652 B_Naive LOneK1K
ENSG00000125703 ATG4C 646047 sc-eQTL 7.87e-01 -0.0179 0.0663 0.652 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -163542 sc-eQTL 8.72e-20 -0.776 0.077 0.652 B_Naive LOneK1K
ENSG00000162607 USP1 993882 sc-eQTL 9.48e-01 0.00527 0.0805 0.652 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -93193 sc-eQTL 3.66e-03 -0.271 0.0923 0.652 B_Naive LOneK1K
ENSG00000079739 PGM1 -163232 sc-eQTL 3.33e-01 0.0828 0.0854 0.652 CD14_Mono LOneK1K
ENSG00000088035 ALG6 62604 sc-eQTL 5.08e-02 0.161 0.0821 0.652 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 741793 sc-eQTL 3.23e-01 -0.0825 0.0833 0.652 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 646047 sc-eQTL 3.63e-01 0.0525 0.0576 0.652 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.54e-06 -0.4 0.0808 0.652 CD14_Mono LOneK1K
ENSG00000162607 USP1 993882 sc-eQTL 3.88e-01 -0.063 0.0728 0.652 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -163232 sc-eQTL 6.38e-01 0.0384 0.0816 0.653 CD16_Mono LOneK1K
ENSG00000088035 ALG6 62604 sc-eQTL 3.31e-01 0.0902 0.0925 0.653 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 741793 sc-eQTL 8.71e-01 -0.0149 0.0917 0.653 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 646047 sc-eQTL 3.45e-01 -0.0739 0.078 0.653 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -163542 sc-eQTL 3.68e-02 -0.189 0.0899 0.653 CD16_Mono LOneK1K
ENSG00000162607 USP1 993882 sc-eQTL 9.21e-01 0.00842 0.0853 0.653 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -163232 sc-eQTL 6.85e-01 -0.0279 0.0686 0.653 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 62604 sc-eQTL 4.08e-01 0.0682 0.0822 0.653 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 741793 sc-eQTL 8.55e-01 -0.0135 0.0738 0.653 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 646047 sc-eQTL 7.01e-01 -0.0283 0.0736 0.653 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -163542 sc-eQTL 1.00e-04 -0.334 0.0842 0.653 NK_CD56dim LOneK1K
ENSG00000162607 USP1 993882 sc-eQTL 9.81e-01 0.00185 0.0792 0.653 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -93193 sc-eQTL 5.61e-01 0.0561 0.0963 0.653 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 62604 eQTL 2.26e-11 0.0908 0.0134 0.00184 0.00231 0.358
ENSG00000116652 DLEU2L -116903 eQTL 0.00379 -0.0777 0.0268 0.002 0.001 0.358
ENSG00000142856 ITGB3BP -163542 eQTL 1.14e-37 -0.373 0.0278 0.00148 0.0143 0.358
ENSG00000162607 USP1 993882 eQTL 0.0397 -0.0274 0.0133 0.0 0.0 0.358
ENSG00000203965 EFCAB7 -93193 eQTL 1.21e-04 -0.0953 0.0247 0.0 0.0 0.358
ENSG00000230798 FOXD3-AS1 105738 eQTL 0.021 0.0623 0.0269 0.0 0.0 0.358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 ALG6 62604 1.37e-05 1.53e-05 3.38e-06 9.42e-06 3.16e-06 6.96e-06 1.98e-05 3.67e-06 1.66e-05 7.94e-06 1.96e-05 8.35e-06 2.76e-05 5.92e-06 5.06e-06 1.01e-05 8.68e-06 1.35e-05 5.17e-06 4.81e-06 8.17e-06 1.62e-05 1.52e-05 5.15e-06 2.49e-05 5.36e-06 8.09e-06 6.87e-06 1.69e-05 1.38e-05 1.05e-05 1.41e-06 1.88e-06 5.41e-06 7.28e-06 4.27e-06 2.4e-06 2.79e-06 3.48e-06 2.6e-06 1.66e-06 1.82e-05 2.66e-06 4.29e-07 1.98e-06 2.74e-06 3.33e-06 1.5e-06 1.36e-06
ENSG00000142856 ITGB3BP -163542 5.46e-06 5.67e-06 1.24e-06 3.6e-06 1.87e-06 1.51e-06 6.63e-06 1.54e-06 4.75e-06 3.29e-06 7.38e-06 3.55e-06 9.42e-06 1.86e-06 1.03e-06 4.67e-06 3.09e-06 3.74e-06 2.25e-06 2.4e-06 3.19e-06 6.99e-06 4.76e-06 1.99e-06 8.24e-06 2.37e-06 3.6e-06 1.71e-06 5.8e-06 4.97e-06 2.72e-06 7.86e-07 7.05e-07 2.6e-06 1.99e-06 2.04e-06 1.33e-06 9.68e-07 1.42e-06 8.21e-07 8.99e-07 6.63e-06 9.75e-07 1.35e-07 6.87e-07 8.05e-07 9.16e-07 6.93e-07 4.34e-07