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Genes within 1Mb (chr1:63427723:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -165688 sc-eQTL 3.00e-02 -0.214 0.098 0.829 B L1
ENSG00000088035 ALG6 60148 sc-eQTL 4.63e-01 0.0755 0.103 0.829 B L1
ENSG00000116641 DOCK7 739337 sc-eQTL 6.42e-01 -0.0478 0.103 0.829 B L1
ENSG00000125703 ATG4C 643591 sc-eQTL 5.03e-01 -0.0479 0.0713 0.829 B L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.29e-29 -1.1 0.0845 0.829 B L1
ENSG00000162607 USP1 991426 sc-eQTL 6.06e-01 -0.0509 0.0986 0.829 B L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.28e-07 -0.564 0.11 0.829 B L1
ENSG00000079739 PGM1 -165688 sc-eQTL 4.72e-01 -0.0613 0.0851 0.829 CD4T L1
ENSG00000088035 ALG6 60148 sc-eQTL 8.02e-02 0.164 0.0934 0.829 CD4T L1
ENSG00000116641 DOCK7 739337 sc-eQTL 7.93e-01 -0.025 0.0952 0.829 CD4T L1
ENSG00000125703 ATG4C 643591 sc-eQTL 7.82e-01 -0.0213 0.0769 0.829 CD4T L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.61e-40 -1.2 0.0716 0.829 CD4T L1
ENSG00000162607 USP1 991426 sc-eQTL 8.87e-02 -0.127 0.0741 0.829 CD4T L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.11e-04 -0.331 0.0953 0.829 CD4T L1
ENSG00000079739 PGM1 -165688 sc-eQTL 2.81e-01 -0.0998 0.0923 0.829 CD8T L1
ENSG00000088035 ALG6 60148 sc-eQTL 5.20e-01 -0.0657 0.102 0.829 CD8T L1
ENSG00000116641 DOCK7 739337 sc-eQTL 1.98e-01 0.133 0.103 0.829 CD8T L1
ENSG00000125703 ATG4C 643591 sc-eQTL 1.03e-01 0.16 0.0975 0.829 CD8T L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.59e-25 -1.01 0.085 0.829 CD8T L1
ENSG00000162607 USP1 991426 sc-eQTL 5.36e-01 -0.0529 0.0854 0.829 CD8T L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 4.43e-06 -0.49 0.104 0.829 CD8T L1
ENSG00000079739 PGM1 -165688 sc-eQTL 5.43e-01 -0.0638 0.105 0.822 DC L1
ENSG00000088035 ALG6 60148 sc-eQTL 2.83e-01 0.116 0.108 0.822 DC L1
ENSG00000116641 DOCK7 739337 sc-eQTL 9.59e-01 0.00572 0.111 0.822 DC L1
ENSG00000125703 ATG4C 643591 sc-eQTL 5.99e-01 -0.0456 0.0866 0.822 DC L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.83e-05 -0.489 0.116 0.822 DC L1
ENSG00000162607 USP1 991426 sc-eQTL 5.20e-01 -0.068 0.106 0.822 DC L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.33e-02 -0.26 0.104 0.822 DC L1
ENSG00000079739 PGM1 -165688 sc-eQTL 4.64e-01 -0.0741 0.101 0.829 Mono L1
ENSG00000088035 ALG6 60148 sc-eQTL 2.80e-03 0.312 0.103 0.829 Mono L1
ENSG00000116641 DOCK7 739337 sc-eQTL 1.66e-01 -0.141 0.102 0.829 Mono L1
ENSG00000125703 ATG4C 643591 sc-eQTL 7.24e-01 0.0244 0.069 0.829 Mono L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 4.42e-17 -0.845 0.0922 0.829 Mono L1
ENSG00000162607 USP1 991426 sc-eQTL 4.24e-01 -0.0715 0.0894 0.829 Mono L1
ENSG00000079739 PGM1 -165688 sc-eQTL 6.37e-01 0.0405 0.0857 0.828 NK L1
ENSG00000088035 ALG6 60148 sc-eQTL 5.12e-01 0.0659 0.1 0.828 NK L1
ENSG00000116641 DOCK7 739337 sc-eQTL 5.62e-01 -0.048 0.0827 0.828 NK L1
ENSG00000125703 ATG4C 643591 sc-eQTL 7.32e-01 -0.0305 0.0889 0.828 NK L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.25e-10 -0.654 0.101 0.828 NK L1
ENSG00000162607 USP1 991426 sc-eQTL 8.76e-01 0.0154 0.0988 0.828 NK L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.60e-01 -0.0529 0.12 0.828 NK L1
ENSG00000079739 PGM1 -165688 sc-eQTL 4.48e-01 -0.0742 0.0976 0.829 Other_T L1
ENSG00000088035 ALG6 60148 sc-eQTL 5.38e-01 0.0606 0.0981 0.829 Other_T L1
ENSG00000116641 DOCK7 739337 sc-eQTL 6.90e-01 -0.04 0.1 0.829 Other_T L1
ENSG00000125703 ATG4C 643591 sc-eQTL 1.29e-02 0.214 0.0855 0.829 Other_T L1
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.63e-02 -0.17 0.076 0.829 Other_T L1
ENSG00000162607 USP1 991426 sc-eQTL 4.70e-01 0.0482 0.0666 0.829 Other_T L1
ENSG00000203965 EFCAB7 -95649 sc-eQTL 4.49e-02 -0.237 0.118 0.829 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -165688 sc-eQTL 8.96e-01 0.0177 0.135 0.847 B_Activated L2
ENSG00000088035 ALG6 60148 sc-eQTL 7.93e-01 -0.034 0.129 0.847 B_Activated L2
ENSG00000116641 DOCK7 739337 sc-eQTL 8.36e-01 0.0249 0.12 0.847 B_Activated L2
ENSG00000125703 ATG4C 643591 sc-eQTL 5.06e-01 0.0841 0.126 0.847 B_Activated L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.36e-04 -0.436 0.119 0.847 B_Activated L2
ENSG00000162607 USP1 991426 sc-eQTL 6.02e-01 0.0699 0.134 0.847 B_Activated L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 4.25e-01 -0.0934 0.117 0.847 B_Activated L2
ENSG00000079739 PGM1 -165688 sc-eQTL 9.86e-01 -0.002 0.117 0.828 B_Intermediate L2
ENSG00000088035 ALG6 60148 sc-eQTL 9.26e-01 -0.011 0.119 0.828 B_Intermediate L2
ENSG00000116641 DOCK7 739337 sc-eQTL 5.72e-01 -0.0643 0.114 0.828 B_Intermediate L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.48e-01 0.0185 0.0963 0.828 B_Intermediate L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.76e-08 -0.623 0.106 0.828 B_Intermediate L2
ENSG00000162607 USP1 991426 sc-eQTL 7.89e-01 0.0307 0.114 0.828 B_Intermediate L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 3.07e-05 -0.464 0.109 0.828 B_Intermediate L2
ENSG00000079739 PGM1 -165688 sc-eQTL 2.89e-01 -0.121 0.114 0.828 B_Memory L2
ENSG00000088035 ALG6 60148 sc-eQTL 8.35e-01 0.0243 0.116 0.828 B_Memory L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.48e-02 -0.194 0.108 0.828 B_Memory L2
ENSG00000125703 ATG4C 643591 sc-eQTL 7.19e-01 -0.0373 0.104 0.828 B_Memory L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.90e-04 -0.424 0.115 0.828 B_Memory L2
ENSG00000162607 USP1 991426 sc-eQTL 4.38e-01 -0.0928 0.12 0.828 B_Memory L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 3.37e-03 -0.342 0.115 0.828 B_Memory L2
ENSG00000079739 PGM1 -165688 sc-eQTL 5.91e-02 -0.22 0.116 0.829 B_Naive1 L2
ENSG00000088035 ALG6 60148 sc-eQTL 5.22e-01 0.075 0.117 0.829 B_Naive1 L2
ENSG00000116641 DOCK7 739337 sc-eQTL 1.96e-01 0.145 0.112 0.829 B_Naive1 L2
ENSG00000125703 ATG4C 643591 sc-eQTL 6.13e-01 -0.0438 0.0865 0.829 B_Naive1 L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 5.23e-18 -0.912 0.0961 0.829 B_Naive1 L2
ENSG00000162607 USP1 991426 sc-eQTL 1.83e-01 -0.134 0.101 0.829 B_Naive1 L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 5.73e-05 -0.484 0.118 0.829 B_Naive1 L2
ENSG00000079739 PGM1 -165688 sc-eQTL 6.86e-03 -0.312 0.114 0.828 B_Naive2 L2
ENSG00000088035 ALG6 60148 sc-eQTL 5.52e-01 0.0722 0.121 0.828 B_Naive2 L2
ENSG00000116641 DOCK7 739337 sc-eQTL 8.60e-01 -0.0206 0.116 0.828 B_Naive2 L2
ENSG00000125703 ATG4C 643591 sc-eQTL 7.93e-01 0.0295 0.112 0.828 B_Naive2 L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 7.85e-17 -0.936 0.103 0.828 B_Naive2 L2
ENSG00000162607 USP1 991426 sc-eQTL 5.66e-01 0.0665 0.116 0.828 B_Naive2 L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 4.12e-01 0.0992 0.121 0.828 B_Naive2 L2
ENSG00000079739 PGM1 -165688 sc-eQTL 5.59e-01 -0.0694 0.119 0.83 CD4_CTL L2
ENSG00000088035 ALG6 60148 sc-eQTL 7.27e-02 -0.225 0.125 0.83 CD4_CTL L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.62e-01 0.0481 0.11 0.83 CD4_CTL L2
ENSG00000125703 ATG4C 643591 sc-eQTL 3.76e-01 0.101 0.113 0.83 CD4_CTL L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.34e-01 -0.182 0.121 0.83 CD4_CTL L2
ENSG00000162607 USP1 991426 sc-eQTL 4.59e-02 -0.23 0.114 0.83 CD4_CTL L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 9.67e-01 -0.00474 0.115 0.83 CD4_CTL L2
ENSG00000079739 PGM1 -165688 sc-eQTL 7.39e-01 -0.0318 0.0952 0.829 CD4_Naive L2
ENSG00000088035 ALG6 60148 sc-eQTL 1.52e-02 0.25 0.102 0.829 CD4_Naive L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.33e-01 -0.0486 0.102 0.829 CD4_Naive L2
ENSG00000125703 ATG4C 643591 sc-eQTL 6.44e-01 -0.0415 0.0899 0.829 CD4_Naive L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.17e-30 -1.09 0.0804 0.829 CD4_Naive L2
ENSG00000162607 USP1 991426 sc-eQTL 1.17e-01 -0.131 0.0834 0.829 CD4_Naive L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 9.56e-03 -0.281 0.107 0.829 CD4_Naive L2
ENSG00000079739 PGM1 -165688 sc-eQTL 5.61e-02 -0.188 0.0978 0.829 CD4_TCM L2
ENSG00000088035 ALG6 60148 sc-eQTL 3.94e-01 -0.0976 0.114 0.829 CD4_TCM L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.61e-01 -0.0445 0.101 0.829 CD4_TCM L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.49e-02 -0.17 0.0981 0.829 CD4_TCM L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.28e-20 -0.978 0.0951 0.829 CD4_TCM L2
ENSG00000162607 USP1 991426 sc-eQTL 7.91e-01 -0.0253 0.0955 0.829 CD4_TCM L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 3.53e-03 -0.326 0.11 0.829 CD4_TCM L2
ENSG00000079739 PGM1 -165688 sc-eQTL 7.07e-01 0.0435 0.115 0.829 CD4_TEM L2
ENSG00000088035 ALG6 60148 sc-eQTL 3.17e-01 0.116 0.116 0.829 CD4_TEM L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.90e-01 0.0302 0.113 0.829 CD4_TEM L2
ENSG00000125703 ATG4C 643591 sc-eQTL 1.04e-01 0.178 0.109 0.829 CD4_TEM L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.83e-05 -0.476 0.109 0.829 CD4_TEM L2
ENSG00000162607 USP1 991426 sc-eQTL 1.65e-01 -0.149 0.107 0.829 CD4_TEM L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 3.80e-01 -0.103 0.117 0.829 CD4_TEM L2
ENSG00000079739 PGM1 -165688 sc-eQTL 6.71e-01 -0.0453 0.107 0.829 CD8_CTL L2
ENSG00000088035 ALG6 60148 sc-eQTL 4.97e-01 0.077 0.113 0.829 CD8_CTL L2
ENSG00000116641 DOCK7 739337 sc-eQTL 9.24e-01 0.0103 0.108 0.829 CD8_CTL L2
ENSG00000125703 ATG4C 643591 sc-eQTL 6.72e-01 0.0485 0.114 0.829 CD8_CTL L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.34e-09 -0.665 0.11 0.829 CD8_CTL L2
ENSG00000162607 USP1 991426 sc-eQTL 9.14e-01 -0.0115 0.107 0.829 CD8_CTL L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.17e-01 -0.191 0.121 0.829 CD8_CTL L2
ENSG00000079739 PGM1 -165688 sc-eQTL 9.78e-01 0.00296 0.107 0.829 CD8_Naive L2
ENSG00000088035 ALG6 60148 sc-eQTL 5.46e-01 -0.067 0.111 0.829 CD8_Naive L2
ENSG00000116641 DOCK7 739337 sc-eQTL 2.12e-01 0.143 0.114 0.829 CD8_Naive L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.56e-01 0.02 0.11 0.829 CD8_Naive L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.16e-16 -0.853 0.0946 0.829 CD8_Naive L2
ENSG00000162607 USP1 991426 sc-eQTL 2.26e-01 -0.114 0.0938 0.829 CD8_Naive L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.47e-03 -0.33 0.102 0.829 CD8_Naive L2
ENSG00000079739 PGM1 -165688 sc-eQTL 9.30e-01 -0.0103 0.117 0.836 CD8_TCM L2
ENSG00000088035 ALG6 60148 sc-eQTL 2.22e-01 -0.144 0.118 0.836 CD8_TCM L2
ENSG00000116641 DOCK7 739337 sc-eQTL 8.20e-01 0.0263 0.115 0.836 CD8_TCM L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.22e-01 -0.0265 0.118 0.836 CD8_TCM L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.14e-07 -0.587 0.107 0.836 CD8_TCM L2
ENSG00000162607 USP1 991426 sc-eQTL 9.37e-01 -0.00875 0.11 0.836 CD8_TCM L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 5.31e-01 -0.0733 0.117 0.836 CD8_TCM L2
ENSG00000079739 PGM1 -165688 sc-eQTL 4.91e-01 -0.0807 0.117 0.822 CD8_TEM L2
ENSG00000088035 ALG6 60148 sc-eQTL 4.81e-01 -0.0828 0.117 0.822 CD8_TEM L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.71e-01 0.0332 0.114 0.822 CD8_TEM L2
ENSG00000125703 ATG4C 643591 sc-eQTL 1.46e-02 0.266 0.108 0.822 CD8_TEM L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.46e-02 -0.265 0.117 0.822 CD8_TEM L2
ENSG00000162607 USP1 991426 sc-eQTL 2.48e-01 0.131 0.113 0.822 CD8_TEM L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.40e-02 -0.212 0.114 0.822 CD8_TEM L2
ENSG00000079739 PGM1 -165688 sc-eQTL 8.60e-01 -0.0201 0.113 0.827 MAIT L2
ENSG00000088035 ALG6 60148 sc-eQTL 8.37e-01 -0.0232 0.112 0.827 MAIT L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.69e-01 0.0316 0.108 0.827 MAIT L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.26e-02 0.197 0.113 0.827 MAIT L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 1.14e-06 -0.538 0.107 0.827 MAIT L2
ENSG00000162607 USP1 991426 sc-eQTL 1.81e-01 -0.151 0.112 0.827 MAIT L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.51e-01 -0.168 0.116 0.827 MAIT L2
ENSG00000079739 PGM1 -165688 sc-eQTL 9.48e-01 0.00734 0.113 0.833 NK_CD56bright L2
ENSG00000088035 ALG6 60148 sc-eQTL 3.60e-01 0.106 0.116 0.833 NK_CD56bright L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.59e-01 -0.0444 0.101 0.833 NK_CD56bright L2
ENSG00000125703 ATG4C 643591 sc-eQTL 6.34e-01 0.0536 0.112 0.833 NK_CD56bright L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.27e-03 -0.353 0.114 0.833 NK_CD56bright L2
ENSG00000162607 USP1 991426 sc-eQTL 2.79e-01 -0.13 0.12 0.833 NK_CD56bright L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 4.42e-01 -0.0887 0.115 0.833 NK_CD56bright L2
ENSG00000079739 PGM1 -165688 sc-eQTL 6.10e-01 0.0456 0.0893 0.83 NK_CD56dim L2
ENSG00000088035 ALG6 60148 sc-eQTL 9.37e-01 -0.00904 0.113 0.83 NK_CD56dim L2
ENSG00000116641 DOCK7 739337 sc-eQTL 3.71e-01 -0.0882 0.0984 0.83 NK_CD56dim L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.73e-02 -0.171 0.0995 0.83 NK_CD56dim L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.78e-05 -0.446 0.11 0.83 NK_CD56dim L2
ENSG00000162607 USP1 991426 sc-eQTL 2.14e-01 0.137 0.11 0.83 NK_CD56dim L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.02e-01 0.0643 0.123 0.83 NK_CD56dim L2
ENSG00000079739 PGM1 -165688 sc-eQTL 6.78e-02 -0.221 0.121 0.836 NK_HLA L2
ENSG00000088035 ALG6 60148 sc-eQTL 4.51e-01 0.095 0.126 0.836 NK_HLA L2
ENSG00000116641 DOCK7 739337 sc-eQTL 9.39e-01 0.00738 0.0964 0.836 NK_HLA L2
ENSG00000125703 ATG4C 643591 sc-eQTL 4.58e-01 0.0833 0.112 0.836 NK_HLA L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.96e-03 -0.336 0.115 0.836 NK_HLA L2
ENSG00000162607 USP1 991426 sc-eQTL 2.98e-01 0.128 0.123 0.836 NK_HLA L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.73e-01 0.0474 0.112 0.836 NK_HLA L2
ENSG00000079739 PGM1 -165688 sc-eQTL 2.64e-01 0.11 0.098 0.83 NK_cytokine L2
ENSG00000088035 ALG6 60148 sc-eQTL 4.53e-01 0.0833 0.111 0.83 NK_cytokine L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.76e-01 0.0293 0.103 0.83 NK_cytokine L2
ENSG00000125703 ATG4C 643591 sc-eQTL 5.49e-01 0.063 0.105 0.83 NK_cytokine L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 9.34e-07 -0.52 0.103 0.83 NK_cytokine L2
ENSG00000162607 USP1 991426 sc-eQTL 7.46e-01 -0.0372 0.115 0.83 NK_cytokine L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.95e-01 -0.0456 0.116 0.83 NK_cytokine L2
ENSG00000079739 PGM1 -165688 sc-eQTL 8.70e-02 -0.261 0.151 0.841 PB L2
ENSG00000088035 ALG6 60148 sc-eQTL 2.82e-01 0.173 0.16 0.841 PB L2
ENSG00000116641 DOCK7 739337 sc-eQTL 8.54e-01 0.0317 0.172 0.841 PB L2
ENSG00000125703 ATG4C 643591 sc-eQTL 4.12e-01 -0.123 0.149 0.841 PB L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.36e-03 -0.446 0.143 0.841 PB L2
ENSG00000162607 USP1 991426 sc-eQTL 2.16e-01 0.184 0.148 0.841 PB L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.36e-01 -0.244 0.162 0.841 PB L2
ENSG00000079739 PGM1 -165688 sc-eQTL 4.98e-01 -0.0719 0.106 0.83 Pro_T L2
ENSG00000088035 ALG6 60148 sc-eQTL 7.01e-01 -0.0415 0.108 0.83 Pro_T L2
ENSG00000116641 DOCK7 739337 sc-eQTL 1.14e-01 -0.171 0.108 0.83 Pro_T L2
ENSG00000125703 ATG4C 643591 sc-eQTL 7.02e-01 -0.0363 0.0947 0.83 Pro_T L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 9.25e-07 0.454 0.0897 0.83 Pro_T L2
ENSG00000162607 USP1 991426 sc-eQTL 1.58e-01 0.0922 0.065 0.83 Pro_T L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 3.21e-01 0.11 0.11 0.83 Pro_T L2
ENSG00000079739 PGM1 -165688 sc-eQTL 8.32e-01 -0.0237 0.112 0.829 Treg L2
ENSG00000088035 ALG6 60148 sc-eQTL 2.95e-01 0.125 0.119 0.829 Treg L2
ENSG00000116641 DOCK7 739337 sc-eQTL 3.87e-01 0.0949 0.109 0.829 Treg L2
ENSG00000125703 ATG4C 643591 sc-eQTL 2.41e-01 0.131 0.112 0.829 Treg L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 4.39e-03 -0.331 0.115 0.829 Treg L2
ENSG00000162607 USP1 991426 sc-eQTL 7.39e-01 0.0379 0.113 0.829 Treg L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.81e-01 0.0462 0.112 0.829 Treg L2
ENSG00000079739 PGM1 -165688 sc-eQTL 2.12e-01 -0.14 0.112 0.822 cDC L2
ENSG00000088035 ALG6 60148 sc-eQTL 3.92e-01 0.0974 0.113 0.822 cDC L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.41e-01 0.052 0.111 0.822 cDC L2
ENSG00000125703 ATG4C 643591 sc-eQTL 9.38e-01 -0.00758 0.0968 0.822 cDC L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.27e-03 -0.37 0.12 0.822 cDC L2
ENSG00000162607 USP1 991426 sc-eQTL 5.84e-01 -0.0599 0.109 0.822 cDC L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 2.77e-01 -0.107 0.0983 0.822 cDC L2
ENSG00000079739 PGM1 -165688 sc-eQTL 7.11e-01 0.0389 0.105 0.829 cMono_IL1B L2
ENSG00000088035 ALG6 60148 sc-eQTL 1.02e-01 0.172 0.105 0.829 cMono_IL1B L2
ENSG00000116641 DOCK7 739337 sc-eQTL 4.20e-01 -0.0895 0.111 0.829 cMono_IL1B L2
ENSG00000125703 ATG4C 643591 sc-eQTL 7.50e-01 0.0249 0.078 0.829 cMono_IL1B L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 9.04e-12 -0.715 0.0989 0.829 cMono_IL1B L2
ENSG00000162607 USP1 991426 sc-eQTL 7.10e-01 -0.0362 0.0974 0.829 cMono_IL1B L2
ENSG00000079739 PGM1 -165688 sc-eQTL 1.74e-01 -0.159 0.117 0.829 cMono_S100A L2
ENSG00000088035 ALG6 60148 sc-eQTL 1.54e-01 0.169 0.119 0.829 cMono_S100A L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.14e-01 -0.0557 0.11 0.829 cMono_S100A L2
ENSG00000125703 ATG4C 643591 sc-eQTL 5.79e-01 0.0531 0.0955 0.829 cMono_S100A L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.89e-05 -0.422 0.104 0.829 cMono_S100A L2
ENSG00000162607 USP1 991426 sc-eQTL 1.37e-01 -0.165 0.11 0.829 cMono_S100A L2
ENSG00000079739 PGM1 -165688 sc-eQTL 5.98e-01 -0.0687 0.13 0.836 gdT L2
ENSG00000088035 ALG6 60148 sc-eQTL 7.01e-01 -0.0533 0.139 0.836 gdT L2
ENSG00000116641 DOCK7 739337 sc-eQTL 7.23e-01 0.0483 0.136 0.836 gdT L2
ENSG00000125703 ATG4C 643591 sc-eQTL 8.34e-01 0.0272 0.13 0.836 gdT L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.46e-02 -0.29 0.136 0.836 gdT L2
ENSG00000162607 USP1 991426 sc-eQTL 6.92e-01 -0.0517 0.131 0.836 gdT L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 6.95e-01 -0.0534 0.136 0.836 gdT L2
ENSG00000079739 PGM1 -165688 sc-eQTL 3.25e-01 -0.116 0.118 0.829 intMono L2
ENSG00000088035 ALG6 60148 sc-eQTL 2.66e-01 0.122 0.11 0.829 intMono L2
ENSG00000116641 DOCK7 739337 sc-eQTL 6.95e-01 -0.0441 0.112 0.829 intMono L2
ENSG00000125703 ATG4C 643591 sc-eQTL 3.48e-01 0.101 0.107 0.829 intMono L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 8.79e-06 -0.513 0.112 0.829 intMono L2
ENSG00000162607 USP1 991426 sc-eQTL 4.35e-01 -0.0937 0.12 0.829 intMono L2
ENSG00000079739 PGM1 -165688 sc-eQTL 3.51e-01 -0.0986 0.105 0.83 ncMono L2
ENSG00000088035 ALG6 60148 sc-eQTL 3.12e-01 0.117 0.116 0.83 ncMono L2
ENSG00000116641 DOCK7 739337 sc-eQTL 3.36e-01 -0.11 0.114 0.83 ncMono L2
ENSG00000125703 ATG4C 643591 sc-eQTL 3.59e-01 -0.0978 0.107 0.83 ncMono L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 5.48e-03 -0.308 0.109 0.83 ncMono L2
ENSG00000162607 USP1 991426 sc-eQTL 8.52e-01 -0.0214 0.114 0.83 ncMono L2
ENSG00000079739 PGM1 -165688 sc-eQTL 4.77e-01 -0.0869 0.122 0.814 pDC L2
ENSG00000088035 ALG6 60148 sc-eQTL 4.41e-01 0.0917 0.119 0.814 pDC L2
ENSG00000116641 DOCK7 739337 sc-eQTL 9.05e-01 -0.0145 0.121 0.814 pDC L2
ENSG00000125703 ATG4C 643591 sc-eQTL 6.88e-01 -0.0439 0.109 0.814 pDC L2
ENSG00000142856 ITGB3BP -165998 sc-eQTL 3.02e-02 -0.264 0.12 0.814 pDC L2
ENSG00000162607 USP1 991426 sc-eQTL 6.06e-01 0.0643 0.125 0.814 pDC L2
ENSG00000203965 EFCAB7 -95649 sc-eQTL 2.22e-02 -0.246 0.106 0.814 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -165688 sc-eQTL 6.05e-01 -0.0569 0.11 0.829 B_Memory LOneK1K
ENSG00000088035 ALG6 60148 sc-eQTL 8.23e-01 0.0273 0.121 0.829 B_Memory LOneK1K
ENSG00000116641 DOCK7 739337 sc-eQTL 3.28e-01 -0.103 0.105 0.829 B_Memory LOneK1K
ENSG00000125703 ATG4C 643591 sc-eQTL 7.97e-01 -0.022 0.0852 0.829 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.22e-13 -0.76 0.099 0.829 B_Memory LOneK1K
ENSG00000162607 USP1 991426 sc-eQTL 8.40e-01 -0.0219 0.109 0.829 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -95649 sc-eQTL 1.17e-06 -0.552 0.11 0.829 B_Memory LOneK1K
ENSG00000079739 PGM1 -165688 sc-eQTL 3.25e-03 -0.332 0.112 0.829 B_Naive LOneK1K
ENSG00000088035 ALG6 60148 sc-eQTL 4.54e-01 0.0879 0.117 0.829 B_Naive LOneK1K
ENSG00000116641 DOCK7 739337 sc-eQTL 6.97e-01 0.0426 0.11 0.829 B_Naive LOneK1K
ENSG00000125703 ATG4C 643591 sc-eQTL 6.78e-01 -0.0347 0.0836 0.829 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -165998 sc-eQTL 6.62e-26 -1.1 0.0909 0.829 B_Naive LOneK1K
ENSG00000162607 USP1 991426 sc-eQTL 5.57e-01 -0.0597 0.101 0.829 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -95649 sc-eQTL 2.86e-03 -0.351 0.116 0.829 B_Naive LOneK1K
ENSG00000079739 PGM1 -165688 sc-eQTL 7.83e-01 -0.0297 0.108 0.829 CD14_Mono LOneK1K
ENSG00000088035 ALG6 60148 sc-eQTL 2.85e-02 0.228 0.103 0.829 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 739337 sc-eQTL 2.19e-01 -0.129 0.105 0.829 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 643591 sc-eQTL 5.48e-01 0.0438 0.0727 0.829 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -165998 sc-eQTL 4.98e-13 -0.733 0.0951 0.829 CD14_Mono LOneK1K
ENSG00000162607 USP1 991426 sc-eQTL 1.87e-01 -0.121 0.0916 0.829 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -165688 sc-eQTL 1.40e-01 -0.152 0.102 0.828 CD16_Mono LOneK1K
ENSG00000088035 ALG6 60148 sc-eQTL 3.51e-02 0.245 0.116 0.828 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 739337 sc-eQTL 4.64e-01 -0.0848 0.116 0.828 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 643591 sc-eQTL 8.73e-01 0.0158 0.0986 0.828 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -165998 sc-eQTL 2.60e-06 -0.525 0.109 0.828 CD16_Mono LOneK1K
ENSG00000162607 USP1 991426 sc-eQTL 6.77e-01 -0.0448 0.108 0.828 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -165688 sc-eQTL 6.77e-01 0.0363 0.0871 0.83 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 60148 sc-eQTL 7.07e-01 0.0394 0.105 0.83 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 739337 sc-eQTL 8.84e-01 -0.0137 0.0937 0.83 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 643591 sc-eQTL 6.18e-01 -0.0467 0.0935 0.83 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -165998 sc-eQTL 7.37e-09 -0.617 0.102 0.83 NK_CD56dim LOneK1K
ENSG00000162607 USP1 991426 sc-eQTL 4.53e-01 0.0757 0.101 0.83 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -95649 sc-eQTL 8.22e-01 -0.0276 0.122 0.83 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 60148 eQTL 2.16e-10 0.105 0.0164 0.0 0.0 0.197
ENSG00000142856 ITGB3BP -165998 eQTL 1.19e-30 -0.412 0.0346 0.0362 0.0 0.197
ENSG00000230798 FOXD3-AS1 103282 eQTL 0.000537 0.114 0.0328 0.00962 0.00907 0.197

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 ALG6 60148 7.86e-06 9.43e-06 1.44e-06 5.54e-06 2.35e-06 4.22e-06 1.07e-05 2.23e-06 9.55e-06 5.49e-06 1.2e-05 5.33e-06 1.47e-05 3.77e-06 2.94e-06 6.74e-06 4.12e-06 7.77e-06 2.93e-06 3.04e-06 6.11e-06 9.54e-06 8.25e-06 3.38e-06 1.48e-05 4.3e-06 5.83e-06 4.68e-06 1.1e-05 8.64e-06 5.42e-06 1.08e-06 1.23e-06 3.59e-06 4.3e-06 2.78e-06 1.78e-06 1.91e-06 2.06e-06 1.2e-06 1.2e-06 1.28e-05 1.42e-06 2.5e-07 9.2e-07 1.76e-06 1.8e-06 7.75e-07 5e-07
ENSG00000142856 ITGB3BP -165998 3.04e-06 3.29e-06 6.03e-07 1.96e-06 1.14e-06 7.88e-07 2.51e-06 1.01e-06 2.78e-06 1.67e-06 3.14e-06 1.91e-06 4.86e-06 1.18e-06 9.97e-07 2.37e-06 1.63e-06 2.13e-06 1.43e-06 9.17e-07 1.98e-06 3.42e-06 3.36e-06 1.86e-06 4.42e-06 1.27e-06 1.87e-06 1.43e-06 3.88e-06 2.56e-06 1.91e-06 4.91e-07 8.14e-07 1.66e-06 1.62e-06 9.23e-07 9.88e-07 4.68e-07 1.29e-06 3.8e-07 4.72e-07 4.03e-06 5.92e-07 1.8e-07 4.19e-07 3.22e-07 7.69e-07 2.07e-07 3.24e-07
ENSG00000230798 FOXD3-AS1 103282 4.86e-06 5.64e-06 6.56e-07 3.5e-06 1.82e-06 1.52e-06 7.52e-06 1.29e-06 4.67e-06 3.06e-06 6.97e-06 3.12e-06 9e-06 2.02e-06 9.59e-07 4.58e-06 1.99e-06 3.87e-06 1.65e-06 2.02e-06 2.93e-06 5.63e-06 4.69e-06 2.01e-06 9.13e-06 2.26e-06 3.22e-06 1.86e-06 5.97e-06 5.45e-06 2.62e-06 4.82e-07 7.03e-07 2.44e-06 2.03e-06 1.61e-06 1.3e-06 5.57e-07 1.4e-06 8.61e-07 1.02e-06 7.41e-06 5.08e-07 1.56e-07 7.34e-07 8.07e-07 9.9e-07 7.14e-07 5.66e-07