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Genes within 1Mb (chr1:63403695:C:CT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -189716 sc-eQTL 2.34e-02 -0.222 0.0972 0.825 B L1
ENSG00000088035 ALG6 36120 sc-eQTL 4.00e-01 0.0859 0.102 0.825 B L1
ENSG00000116641 DOCK7 715309 sc-eQTL 7.46e-01 -0.033 0.102 0.825 B L1
ENSG00000125703 ATG4C 619563 sc-eQTL 7.09e-01 -0.0265 0.0709 0.825 B L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 8.29e-31 -1.12 0.0822 0.825 B L1
ENSG00000162607 USP1 967398 sc-eQTL 5.89e-01 -0.053 0.0979 0.825 B L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.32e-06 -0.544 0.109 0.825 B L1
ENSG00000079739 PGM1 -189716 sc-eQTL 4.19e-01 -0.0686 0.0848 0.825 CD4T L1
ENSG00000088035 ALG6 36120 sc-eQTL 8.36e-02 0.162 0.093 0.825 CD4T L1
ENSG00000116641 DOCK7 715309 sc-eQTL 5.18e-01 -0.0614 0.0948 0.825 CD4T L1
ENSG00000125703 ATG4C 619563 sc-eQTL 8.07e-01 -0.0187 0.0766 0.825 CD4T L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.04e-41 -1.2 0.0704 0.825 CD4T L1
ENSG00000162607 USP1 967398 sc-eQTL 4.92e-02 -0.146 0.0736 0.825 CD4T L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 6.57e-04 -0.328 0.0949 0.825 CD4T L1
ENSG00000079739 PGM1 -189716 sc-eQTL 2.34e-01 -0.11 0.0918 0.825 CD8T L1
ENSG00000088035 ALG6 36120 sc-eQTL 5.96e-01 -0.0539 0.101 0.825 CD8T L1
ENSG00000116641 DOCK7 715309 sc-eQTL 3.27e-01 0.101 0.103 0.825 CD8T L1
ENSG00000125703 ATG4C 619563 sc-eQTL 1.10e-01 0.156 0.0971 0.825 CD8T L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 5.06e-26 -1.02 0.0839 0.825 CD8T L1
ENSG00000162607 USP1 967398 sc-eQTL 4.88e-01 -0.059 0.085 0.825 CD8T L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 5.84e-06 -0.482 0.104 0.825 CD8T L1
ENSG00000079739 PGM1 -189716 sc-eQTL 6.42e-01 -0.0486 0.104 0.818 DC L1
ENSG00000088035 ALG6 36120 sc-eQTL 3.13e-01 0.109 0.107 0.818 DC L1
ENSG00000116641 DOCK7 715309 sc-eQTL 9.47e-01 0.00737 0.11 0.818 DC L1
ENSG00000125703 ATG4C 619563 sc-eQTL 4.94e-01 -0.059 0.0862 0.818 DC L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.20e-05 -0.516 0.115 0.818 DC L1
ENSG00000162607 USP1 967398 sc-eQTL 6.41e-01 -0.0492 0.105 0.818 DC L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.52e-02 -0.253 0.103 0.818 DC L1
ENSG00000079739 PGM1 -189716 sc-eQTL 3.80e-01 -0.0884 0.101 0.825 Mono L1
ENSG00000088035 ALG6 36120 sc-eQTL 2.40e-03 0.316 0.103 0.825 Mono L1
ENSG00000116641 DOCK7 715309 sc-eQTL 2.32e-01 -0.121 0.101 0.825 Mono L1
ENSG00000125703 ATG4C 619563 sc-eQTL 5.79e-01 0.0382 0.0686 0.825 Mono L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 2.37e-17 -0.848 0.0915 0.825 Mono L1
ENSG00000162607 USP1 967398 sc-eQTL 5.38e-01 -0.0549 0.0891 0.825 Mono L1
ENSG00000079739 PGM1 -189716 sc-eQTL 6.27e-01 0.0414 0.0852 0.824 NK L1
ENSG00000088035 ALG6 36120 sc-eQTL 3.96e-01 0.0848 0.0997 0.824 NK L1
ENSG00000116641 DOCK7 715309 sc-eQTL 4.25e-01 -0.0657 0.0822 0.824 NK L1
ENSG00000125703 ATG4C 619563 sc-eQTL 6.60e-01 -0.0389 0.0883 0.824 NK L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 9.01e-11 -0.679 0.0993 0.824 NK L1
ENSG00000162607 USP1 967398 sc-eQTL 8.61e-01 0.0172 0.0981 0.824 NK L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 6.01e-01 -0.0624 0.119 0.824 NK L1
ENSG00000079739 PGM1 -189716 sc-eQTL 3.82e-01 -0.0849 0.0969 0.825 Other_T L1
ENSG00000088035 ALG6 36120 sc-eQTL 5.03e-01 0.0655 0.0975 0.825 Other_T L1
ENSG00000116641 DOCK7 715309 sc-eQTL 7.30e-01 -0.0344 0.0996 0.825 Other_T L1
ENSG00000125703 ATG4C 619563 sc-eQTL 1.58e-02 0.207 0.0851 0.825 Other_T L1
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.53e-02 -0.184 0.0754 0.825 Other_T L1
ENSG00000162607 USP1 967398 sc-eQTL 5.24e-01 0.0422 0.0662 0.825 Other_T L1
ENSG00000203965 EFCAB7 -119677 sc-eQTL 5.04e-02 -0.23 0.117 0.825 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -189716 sc-eQTL 9.91e-01 -0.00156 0.134 0.842 B_Activated L2
ENSG00000088035 ALG6 36120 sc-eQTL 8.69e-01 -0.0211 0.128 0.842 B_Activated L2
ENSG00000116641 DOCK7 715309 sc-eQTL 6.96e-01 0.0465 0.119 0.842 B_Activated L2
ENSG00000125703 ATG4C 619563 sc-eQTL 4.07e-01 0.104 0.125 0.842 B_Activated L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.58e-04 -0.43 0.118 0.842 B_Activated L2
ENSG00000162607 USP1 967398 sc-eQTL 5.38e-01 0.0817 0.133 0.842 B_Activated L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 5.82e-01 -0.0638 0.116 0.842 B_Activated L2
ENSG00000079739 PGM1 -189716 sc-eQTL 8.85e-01 -0.0169 0.117 0.824 B_Intermediate L2
ENSG00000088035 ALG6 36120 sc-eQTL 7.41e-01 -0.0391 0.118 0.824 B_Intermediate L2
ENSG00000116641 DOCK7 715309 sc-eQTL 5.16e-01 -0.0735 0.113 0.824 B_Intermediate L2
ENSG00000125703 ATG4C 619563 sc-eQTL 5.78e-01 0.0533 0.0957 0.824 B_Intermediate L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 8.79e-09 -0.632 0.105 0.824 B_Intermediate L2
ENSG00000162607 USP1 967398 sc-eQTL 7.58e-01 0.0351 0.114 0.824 B_Intermediate L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 5.80e-05 -0.446 0.109 0.824 B_Intermediate L2
ENSG00000079739 PGM1 -189716 sc-eQTL 2.79e-01 -0.123 0.114 0.823 B_Memory L2
ENSG00000088035 ALG6 36120 sc-eQTL 5.57e-01 0.0681 0.116 0.823 B_Memory L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.30e-02 -0.182 0.108 0.823 B_Memory L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.83e-01 -0.0422 0.103 0.823 B_Memory L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.06e-04 -0.451 0.114 0.823 B_Memory L2
ENSG00000162607 USP1 967398 sc-eQTL 3.25e-01 -0.117 0.119 0.823 B_Memory L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 7.98e-03 -0.309 0.115 0.823 B_Memory L2
ENSG00000079739 PGM1 -189716 sc-eQTL 5.91e-02 -0.218 0.115 0.825 B_Naive1 L2
ENSG00000088035 ALG6 36120 sc-eQTL 5.06e-01 0.0775 0.116 0.825 B_Naive1 L2
ENSG00000116641 DOCK7 715309 sc-eQTL 1.94e-01 0.145 0.111 0.825 B_Naive1 L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.93e-01 -0.034 0.0859 0.825 B_Naive1 L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.76e-18 -0.916 0.0949 0.825 B_Naive1 L2
ENSG00000162607 USP1 967398 sc-eQTL 1.82e-01 -0.134 0.0998 0.825 B_Naive1 L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 3.65e-05 -0.493 0.117 0.825 B_Naive1 L2
ENSG00000079739 PGM1 -189716 sc-eQTL 9.62e-03 -0.296 0.113 0.824 B_Naive2 L2
ENSG00000088035 ALG6 36120 sc-eQTL 4.27e-01 0.0955 0.12 0.824 B_Naive2 L2
ENSG00000116641 DOCK7 715309 sc-eQTL 8.47e-01 0.0224 0.116 0.824 B_Naive2 L2
ENSG00000125703 ATG4C 619563 sc-eQTL 7.52e-01 0.0351 0.111 0.824 B_Naive2 L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 5.88e-18 -0.956 0.101 0.824 B_Naive2 L2
ENSG00000162607 USP1 967398 sc-eQTL 5.17e-01 0.0744 0.115 0.824 B_Naive2 L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 4.16e-01 0.0976 0.12 0.824 B_Naive2 L2
ENSG00000079739 PGM1 -189716 sc-eQTL 4.34e-01 -0.0927 0.118 0.825 CD4_CTL L2
ENSG00000088035 ALG6 36120 sc-eQTL 9.16e-02 -0.21 0.124 0.825 CD4_CTL L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.29e-01 0.00975 0.109 0.825 CD4_CTL L2
ENSG00000125703 ATG4C 619563 sc-eQTL 2.93e-01 0.119 0.113 0.825 CD4_CTL L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.96e-01 -0.156 0.12 0.825 CD4_CTL L2
ENSG00000162607 USP1 967398 sc-eQTL 3.91e-02 -0.236 0.114 0.825 CD4_CTL L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 9.24e-01 -0.011 0.115 0.825 CD4_CTL L2
ENSG00000079739 PGM1 -189716 sc-eQTL 6.87e-01 -0.0383 0.0949 0.825 CD4_Naive L2
ENSG00000088035 ALG6 36120 sc-eQTL 1.58e-02 0.247 0.102 0.825 CD4_Naive L2
ENSG00000116641 DOCK7 715309 sc-eQTL 4.15e-01 -0.0826 0.101 0.825 CD4_Naive L2
ENSG00000125703 ATG4C 619563 sc-eQTL 7.06e-01 -0.0338 0.0895 0.825 CD4_Naive L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 6.05e-32 -1.1 0.0788 0.825 CD4_Naive L2
ENSG00000162607 USP1 967398 sc-eQTL 8.29e-02 -0.145 0.083 0.825 CD4_Naive L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.09e-02 -0.275 0.107 0.825 CD4_Naive L2
ENSG00000079739 PGM1 -189716 sc-eQTL 6.28e-02 -0.182 0.0974 0.825 CD4_TCM L2
ENSG00000088035 ALG6 36120 sc-eQTL 4.25e-01 -0.091 0.114 0.825 CD4_TCM L2
ENSG00000116641 DOCK7 715309 sc-eQTL 6.79e-01 -0.0418 0.101 0.825 CD4_TCM L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.88e-02 -0.178 0.0976 0.825 CD4_TCM L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.63e-20 -0.969 0.0948 0.825 CD4_TCM L2
ENSG00000162607 USP1 967398 sc-eQTL 6.87e-01 -0.0383 0.095 0.825 CD4_TCM L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 4.92e-03 -0.313 0.11 0.825 CD4_TCM L2
ENSG00000079739 PGM1 -189716 sc-eQTL 6.06e-01 0.0593 0.115 0.825 CD4_TEM L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.56e-01 0.107 0.115 0.825 CD4_TEM L2
ENSG00000116641 DOCK7 715309 sc-eQTL 7.53e-01 0.0355 0.113 0.825 CD4_TEM L2
ENSG00000125703 ATG4C 619563 sc-eQTL 1.02e-01 0.178 0.109 0.825 CD4_TEM L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 9.06e-06 -0.49 0.108 0.825 CD4_TEM L2
ENSG00000162607 USP1 967398 sc-eQTL 1.10e-01 -0.171 0.106 0.825 CD4_TEM L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 3.63e-01 -0.107 0.117 0.825 CD4_TEM L2
ENSG00000079739 PGM1 -189716 sc-eQTL 7.14e-01 -0.0388 0.106 0.825 CD8_CTL L2
ENSG00000088035 ALG6 36120 sc-eQTL 5.66e-01 0.0647 0.113 0.825 CD8_CTL L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.42e-01 -0.00781 0.107 0.825 CD8_CTL L2
ENSG00000125703 ATG4C 619563 sc-eQTL 7.28e-01 0.0396 0.114 0.825 CD8_CTL L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 2.62e-09 -0.676 0.109 0.825 CD8_CTL L2
ENSG00000162607 USP1 967398 sc-eQTL 9.27e-01 -0.00968 0.106 0.825 CD8_CTL L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.05e-01 -0.196 0.12 0.825 CD8_CTL L2
ENSG00000079739 PGM1 -189716 sc-eQTL 9.60e-01 0.00535 0.107 0.825 CD8_Naive L2
ENSG00000088035 ALG6 36120 sc-eQTL 7.14e-01 -0.0405 0.11 0.825 CD8_Naive L2
ENSG00000116641 DOCK7 715309 sc-eQTL 2.03e-01 0.145 0.114 0.825 CD8_Naive L2
ENSG00000125703 ATG4C 619563 sc-eQTL 7.97e-01 0.0282 0.109 0.825 CD8_Naive L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.47e-17 -0.87 0.0932 0.825 CD8_Naive L2
ENSG00000162607 USP1 967398 sc-eQTL 1.96e-01 -0.121 0.0933 0.825 CD8_Naive L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.61e-03 -0.326 0.102 0.825 CD8_Naive L2
ENSG00000079739 PGM1 -189716 sc-eQTL 7.95e-01 -0.0303 0.116 0.831 CD8_TCM L2
ENSG00000088035 ALG6 36120 sc-eQTL 2.18e-01 -0.145 0.117 0.831 CD8_TCM L2
ENSG00000116641 DOCK7 715309 sc-eQTL 6.69e-01 0.0491 0.115 0.831 CD8_TCM L2
ENSG00000125703 ATG4C 619563 sc-eQTL 8.64e-01 -0.0201 0.117 0.831 CD8_TCM L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.57e-07 -0.578 0.106 0.831 CD8_TCM L2
ENSG00000162607 USP1 967398 sc-eQTL 8.21e-01 -0.0249 0.11 0.831 CD8_TCM L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 6.07e-01 -0.0599 0.116 0.831 CD8_TCM L2
ENSG00000079739 PGM1 -189716 sc-eQTL 3.76e-01 -0.103 0.116 0.817 CD8_TEM L2
ENSG00000088035 ALG6 36120 sc-eQTL 4.60e-01 -0.0864 0.117 0.817 CD8_TEM L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.47e-01 0.00754 0.113 0.817 CD8_TEM L2
ENSG00000125703 ATG4C 619563 sc-eQTL 1.04e-02 0.277 0.107 0.817 CD8_TEM L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.33e-02 -0.25 0.116 0.817 CD8_TEM L2
ENSG00000162607 USP1 967398 sc-eQTL 1.85e-01 0.149 0.112 0.817 CD8_TEM L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 8.94e-02 -0.194 0.113 0.817 CD8_TEM L2
ENSG00000079739 PGM1 -189716 sc-eQTL 8.41e-01 -0.0227 0.113 0.823 MAIT L2
ENSG00000088035 ALG6 36120 sc-eQTL 9.84e-01 -0.00223 0.112 0.823 MAIT L2
ENSG00000116641 DOCK7 715309 sc-eQTL 8.64e-01 0.0183 0.107 0.823 MAIT L2
ENSG00000125703 ATG4C 619563 sc-eQTL 8.41e-02 0.195 0.112 0.823 MAIT L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 4.62e-07 -0.554 0.106 0.823 MAIT L2
ENSG00000162607 USP1 967398 sc-eQTL 1.88e-01 -0.147 0.112 0.823 MAIT L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.37e-01 -0.173 0.116 0.823 MAIT L2
ENSG00000079739 PGM1 -189716 sc-eQTL 8.43e-01 0.0222 0.112 0.829 NK_CD56bright L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.09e-01 0.117 0.115 0.829 NK_CD56bright L2
ENSG00000116641 DOCK7 715309 sc-eQTL 5.25e-01 -0.0635 0.0998 0.829 NK_CD56bright L2
ENSG00000125703 ATG4C 619563 sc-eQTL 5.08e-01 0.074 0.111 0.829 NK_CD56bright L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.12e-03 -0.34 0.114 0.829 NK_CD56bright L2
ENSG00000162607 USP1 967398 sc-eQTL 3.50e-01 -0.112 0.12 0.829 NK_CD56bright L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 3.89e-01 -0.0987 0.114 0.829 NK_CD56bright L2
ENSG00000079739 PGM1 -189716 sc-eQTL 5.54e-01 0.0525 0.0888 0.825 NK_CD56dim L2
ENSG00000088035 ALG6 36120 sc-eQTL 9.31e-01 -0.00983 0.113 0.825 NK_CD56dim L2
ENSG00000116641 DOCK7 715309 sc-eQTL 2.95e-01 -0.103 0.0978 0.825 NK_CD56dim L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.44e-02 -0.184 0.0988 0.825 NK_CD56dim L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.05e-05 -0.463 0.109 0.825 NK_CD56dim L2
ENSG00000162607 USP1 967398 sc-eQTL 2.39e-01 0.129 0.11 0.825 NK_CD56dim L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 6.91e-01 0.0487 0.122 0.825 NK_CD56dim L2
ENSG00000079739 PGM1 -189716 sc-eQTL 6.88e-02 -0.219 0.12 0.831 NK_HLA L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.67e-01 0.113 0.125 0.831 NK_HLA L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.17e-01 -0.0101 0.0959 0.831 NK_HLA L2
ENSG00000125703 ATG4C 619563 sc-eQTL 5.47e-01 0.0672 0.111 0.831 NK_HLA L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 3.33e-03 -0.341 0.115 0.831 NK_HLA L2
ENSG00000162607 USP1 967398 sc-eQTL 3.05e-01 0.126 0.122 0.831 NK_HLA L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 8.25e-01 0.0247 0.112 0.831 NK_HLA L2
ENSG00000079739 PGM1 -189716 sc-eQTL 2.94e-01 0.103 0.0975 0.825 NK_cytokine L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.30e-01 0.108 0.11 0.825 NK_cytokine L2
ENSG00000116641 DOCK7 715309 sc-eQTL 8.79e-01 0.0156 0.102 0.825 NK_cytokine L2
ENSG00000125703 ATG4C 619563 sc-eQTL 5.16e-01 0.068 0.105 0.825 NK_cytokine L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 7.26e-08 -0.565 0.101 0.825 NK_cytokine L2
ENSG00000162607 USP1 967398 sc-eQTL 8.04e-01 -0.0283 0.114 0.825 NK_cytokine L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 9.22e-01 -0.0113 0.115 0.825 NK_cytokine L2
ENSG00000079739 PGM1 -189716 sc-eQTL 8.70e-02 -0.261 0.151 0.841 PB L2
ENSG00000088035 ALG6 36120 sc-eQTL 2.82e-01 0.173 0.16 0.841 PB L2
ENSG00000116641 DOCK7 715309 sc-eQTL 8.54e-01 0.0317 0.172 0.841 PB L2
ENSG00000125703 ATG4C 619563 sc-eQTL 4.12e-01 -0.123 0.149 0.841 PB L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 2.36e-03 -0.446 0.143 0.841 PB L2
ENSG00000162607 USP1 967398 sc-eQTL 2.16e-01 0.184 0.148 0.841 PB L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.36e-01 -0.244 0.162 0.841 PB L2
ENSG00000079739 PGM1 -189716 sc-eQTL 4.75e-01 -0.0753 0.105 0.826 Pro_T L2
ENSG00000088035 ALG6 36120 sc-eQTL 5.37e-01 -0.0664 0.107 0.826 Pro_T L2
ENSG00000116641 DOCK7 715309 sc-eQTL 7.51e-02 -0.191 0.107 0.826 Pro_T L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.32e-01 -0.0452 0.0942 0.826 Pro_T L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.02e-06 0.45 0.0892 0.826 Pro_T L2
ENSG00000162607 USP1 967398 sc-eQTL 2.68e-01 0.072 0.0648 0.826 Pro_T L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 2.79e-01 0.119 0.11 0.826 Pro_T L2
ENSG00000079739 PGM1 -189716 sc-eQTL 8.13e-01 -0.0263 0.111 0.825 Treg L2
ENSG00000088035 ALG6 36120 sc-eQTL 2.63e-01 0.133 0.118 0.825 Treg L2
ENSG00000116641 DOCK7 715309 sc-eQTL 4.55e-01 0.0814 0.109 0.825 Treg L2
ENSG00000125703 ATG4C 619563 sc-eQTL 2.74e-01 0.122 0.111 0.825 Treg L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.16e-02 -0.292 0.115 0.825 Treg L2
ENSG00000162607 USP1 967398 sc-eQTL 6.51e-01 0.0511 0.113 0.825 Treg L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 8.32e-01 0.0237 0.111 0.825 Treg L2
ENSG00000079739 PGM1 -189716 sc-eQTL 3.44e-01 -0.105 0.111 0.817 cDC L2
ENSG00000088035 ALG6 36120 sc-eQTL 5.12e-01 0.074 0.113 0.817 cDC L2
ENSG00000116641 DOCK7 715309 sc-eQTL 6.57e-01 0.0493 0.111 0.817 cDC L2
ENSG00000125703 ATG4C 619563 sc-eQTL 9.07e-01 -0.0112 0.0961 0.817 cDC L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.00e-03 -0.395 0.118 0.817 cDC L2
ENSG00000162607 USP1 967398 sc-eQTL 5.42e-01 -0.0661 0.108 0.817 cDC L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 3.76e-01 -0.0867 0.0977 0.817 cDC L2
ENSG00000079739 PGM1 -189716 sc-eQTL 7.20e-01 0.0375 0.105 0.825 cMono_IL1B L2
ENSG00000088035 ALG6 36120 sc-eQTL 9.72e-02 0.173 0.104 0.825 cMono_IL1B L2
ENSG00000116641 DOCK7 715309 sc-eQTL 5.29e-01 -0.0695 0.11 0.825 cMono_IL1B L2
ENSG00000125703 ATG4C 619563 sc-eQTL 6.36e-01 0.0368 0.0776 0.825 cMono_IL1B L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.15e-12 -0.738 0.0975 0.825 cMono_IL1B L2
ENSG00000162607 USP1 967398 sc-eQTL 9.74e-01 -0.00311 0.097 0.825 cMono_IL1B L2
ENSG00000079739 PGM1 -189716 sc-eQTL 1.10e-01 -0.187 0.116 0.825 cMono_S100A L2
ENSG00000088035 ALG6 36120 sc-eQTL 8.03e-02 0.207 0.118 0.825 cMono_S100A L2
ENSG00000116641 DOCK7 715309 sc-eQTL 8.11e-01 -0.0263 0.11 0.825 cMono_S100A L2
ENSG00000125703 ATG4C 619563 sc-eQTL 4.96e-01 0.0647 0.095 0.825 cMono_S100A L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 6.83e-05 -0.42 0.103 0.825 cMono_S100A L2
ENSG00000162607 USP1 967398 sc-eQTL 1.61e-01 -0.155 0.11 0.825 cMono_S100A L2
ENSG00000079739 PGM1 -189716 sc-eQTL 5.17e-01 -0.0841 0.129 0.83 gdT L2
ENSG00000088035 ALG6 36120 sc-eQTL 6.46e-01 -0.0636 0.138 0.83 gdT L2
ENSG00000116641 DOCK7 715309 sc-eQTL 7.04e-01 0.0517 0.135 0.83 gdT L2
ENSG00000125703 ATG4C 619563 sc-eQTL 8.00e-01 0.0329 0.129 0.83 gdT L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 2.54e-02 -0.305 0.135 0.83 gdT L2
ENSG00000162607 USP1 967398 sc-eQTL 7.45e-01 -0.0424 0.13 0.83 gdT L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 7.38e-01 -0.0454 0.135 0.83 gdT L2
ENSG00000079739 PGM1 -189716 sc-eQTL 3.82e-01 -0.103 0.118 0.824 intMono L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.40e-01 0.105 0.109 0.824 intMono L2
ENSG00000116641 DOCK7 715309 sc-eQTL 5.53e-01 -0.0665 0.112 0.824 intMono L2
ENSG00000125703 ATG4C 619563 sc-eQTL 4.62e-01 0.0787 0.107 0.824 intMono L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 7.62e-06 -0.515 0.112 0.824 intMono L2
ENSG00000162607 USP1 967398 sc-eQTL 3.58e-01 -0.11 0.12 0.824 intMono L2
ENSG00000079739 PGM1 -189716 sc-eQTL 2.71e-01 -0.116 0.105 0.826 ncMono L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.90e-01 0.0993 0.115 0.826 ncMono L2
ENSG00000116641 DOCK7 715309 sc-eQTL 3.92e-01 -0.0975 0.114 0.826 ncMono L2
ENSG00000125703 ATG4C 619563 sc-eQTL 4.74e-01 -0.0761 0.106 0.826 ncMono L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 8.11e-03 -0.292 0.109 0.826 ncMono L2
ENSG00000162607 USP1 967398 sc-eQTL 7.73e-01 -0.0328 0.114 0.826 ncMono L2
ENSG00000079739 PGM1 -189716 sc-eQTL 4.08e-01 -0.101 0.121 0.808 pDC L2
ENSG00000088035 ALG6 36120 sc-eQTL 3.10e-01 0.12 0.118 0.808 pDC L2
ENSG00000116641 DOCK7 715309 sc-eQTL 9.70e-01 -0.0046 0.121 0.808 pDC L2
ENSG00000125703 ATG4C 619563 sc-eQTL 7.09e-01 -0.0405 0.108 0.808 pDC L2
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.62e-02 -0.29 0.119 0.808 pDC L2
ENSG00000162607 USP1 967398 sc-eQTL 4.02e-01 0.104 0.124 0.808 pDC L2
ENSG00000203965 EFCAB7 -119677 sc-eQTL 1.67e-02 -0.255 0.106 0.808 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -189716 sc-eQTL 5.29e-01 -0.0688 0.109 0.825 B_Memory LOneK1K
ENSG00000088035 ALG6 36120 sc-eQTL 8.03e-01 0.0301 0.121 0.825 B_Memory LOneK1K
ENSG00000116641 DOCK7 715309 sc-eQTL 3.43e-01 -0.0995 0.105 0.825 B_Memory LOneK1K
ENSG00000125703 ATG4C 619563 sc-eQTL 9.13e-01 0.00928 0.0847 0.825 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.08e-13 -0.777 0.0977 0.825 B_Memory LOneK1K
ENSG00000162607 USP1 967398 sc-eQTL 7.60e-01 -0.0331 0.108 0.825 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -119677 sc-eQTL 6.40e-06 -0.512 0.111 0.825 B_Memory LOneK1K
ENSG00000079739 PGM1 -189716 sc-eQTL 3.73e-03 -0.325 0.111 0.825 B_Naive LOneK1K
ENSG00000088035 ALG6 36120 sc-eQTL 3.89e-01 0.1 0.116 0.825 B_Naive LOneK1K
ENSG00000116641 DOCK7 715309 sc-eQTL 5.88e-01 0.059 0.109 0.825 B_Naive LOneK1K
ENSG00000125703 ATG4C 619563 sc-eQTL 7.87e-01 -0.0224 0.083 0.825 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -190026 sc-eQTL 2.82e-27 -1.11 0.0889 0.825 B_Naive LOneK1K
ENSG00000162607 USP1 967398 sc-eQTL 5.81e-01 -0.0558 0.101 0.825 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -119677 sc-eQTL 2.50e-03 -0.353 0.115 0.825 B_Naive LOneK1K
ENSG00000079739 PGM1 -189716 sc-eQTL 6.63e-01 -0.0469 0.107 0.825 CD14_Mono LOneK1K
ENSG00000088035 ALG6 36120 sc-eQTL 2.02e-02 0.24 0.103 0.825 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 715309 sc-eQTL 3.41e-01 -0.0998 0.105 0.825 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 619563 sc-eQTL 4.28e-01 0.0574 0.0723 0.825 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.10e-13 -0.747 0.094 0.825 CD14_Mono LOneK1K
ENSG00000162607 USP1 967398 sc-eQTL 3.06e-01 -0.0937 0.0913 0.825 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -189716 sc-eQTL 1.19e-01 -0.16 0.102 0.823 CD16_Mono LOneK1K
ENSG00000088035 ALG6 36120 sc-eQTL 5.35e-02 0.224 0.115 0.823 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 715309 sc-eQTL 4.58e-01 -0.0856 0.115 0.823 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 619563 sc-eQTL 8.67e-01 0.0165 0.0983 0.823 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -190026 sc-eQTL 4.82e-06 -0.51 0.109 0.823 CD16_Mono LOneK1K
ENSG00000162607 USP1 967398 sc-eQTL 6.07e-01 -0.0553 0.107 0.823 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -189716 sc-eQTL 6.73e-01 0.0366 0.0866 0.825 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 36120 sc-eQTL 5.82e-01 0.0573 0.104 0.825 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 715309 sc-eQTL 7.37e-01 -0.0313 0.0931 0.825 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 619563 sc-eQTL 5.17e-01 -0.0603 0.0929 0.825 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -190026 sc-eQTL 1.19e-09 -0.642 0.101 0.825 NK_CD56dim LOneK1K
ENSG00000162607 USP1 967398 sc-eQTL 4.76e-01 0.0714 0.0999 0.825 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -119677 sc-eQTL 7.59e-01 -0.0373 0.122 0.825 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 36120 eQTL 1.67e-10 0.106 0.0165 0.0 0.0 0.197
ENSG00000142856 ITGB3BP -190026 eQTL 2.6e-30 -0.412 0.0347 0.0189 0.0 0.197
ENSG00000230798 FOXD3-AS1 79254 eQTL 0.000465 0.116 0.0329 0.0108 0.0103 0.197

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 ALG6 36120 5.35e-05 4.14e-05 6.57e-06 1.62e-05 6.8e-06 1.85e-05 5.41e-05 5.27e-06 4.17e-05 1.76e-05 5.31e-05 2.17e-05 6.54e-05 1.84e-05 7.94e-06 2.45e-05 2.17e-05 2.95e-05 9.51e-06 8e-06 1.86e-05 4.26e-05 3.81e-05 1.04e-05 5.46e-05 9.17e-06 1.81e-05 1.61e-05 3.86e-05 2.67e-05 2.61e-05 1.71e-06 3.46e-06 8.12e-06 1.26e-05 6.44e-06 3.46e-06 3.25e-06 6e-06 3.71e-06 1.81e-06 5.06e-05 4.71e-06 3.24e-07 2.86e-06 4.96e-06 4.55e-06 1.71e-06 1.53e-06
ENSG00000142856 ITGB3BP -190026 1.39e-05 1.53e-05 4.26e-06 8.32e-06 2.75e-06 5.82e-06 2.09e-05 2.18e-06 1.18e-05 6.13e-06 1.74e-05 5.89e-06 2.52e-05 4.21e-06 4.71e-06 9.06e-06 6.74e-06 8.13e-06 3.54e-06 4.11e-06 6.51e-06 1.28e-05 1.62e-05 4.01e-06 2.06e-05 4.4e-06 7.7e-06 4.89e-06 1.64e-05 9.7e-06 7.59e-06 1.03e-06 1.29e-06 3.73e-06 5.84e-06 3.47e-06 1.81e-06 1.93e-06 2.22e-06 2.27e-06 8.81e-07 2.17e-05 2.86e-06 1.76e-07 1.76e-06 3.66e-06 1.86e-06 1.4e-06 1.5e-06
ENSG00000230798 FOXD3-AS1 79254 3.69e-05 2.8e-05 6.31e-06 1.29e-05 4.53e-06 1.28e-05 3.87e-05 3.71e-06 2.44e-05 1.13e-05 3.16e-05 1.33e-05 4.65e-05 1.06e-05 5.99e-06 1.4e-05 1.3e-05 1.66e-05 7.21e-06 5.62e-06 1.12e-05 2.64e-05 2.86e-05 7.31e-06 3.39e-05 5.9e-06 1.17e-05 8.79e-06 2.76e-05 1.85e-05 1.35e-05 1.52e-06 2.56e-06 5.74e-06 9.3e-06 4.59e-06 2.65e-06 2.72e-06 3.56e-06 3.19e-06 1.69e-06 3.92e-05 4.32e-06 2.03e-07 2.26e-06 4.38e-06 3.39e-06 1.61e-06 1.47e-06