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Genes within 1Mb (chr1:63379299:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -214112 sc-eQTL 8.93e-02 0.129 0.0753 0.53 B L1
ENSG00000088035 ALG6 11724 sc-eQTL 7.18e-01 0.0284 0.0786 0.53 B L1
ENSG00000116641 DOCK7 690913 sc-eQTL 6.52e-01 -0.0354 0.0786 0.53 B L1
ENSG00000125703 ATG4C 595167 sc-eQTL 7.44e-01 -0.0179 0.0546 0.53 B L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 1.91e-08 -0.471 0.0807 0.53 B L1
ENSG00000162607 USP1 943002 sc-eQTL 2.64e-01 0.0844 0.0752 0.53 B L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 2.37e-03 -0.268 0.0871 0.53 B L1
ENSG00000079739 PGM1 -214112 sc-eQTL 1.29e-01 0.0992 0.0651 0.53 CD4T L1
ENSG00000088035 ALG6 11724 sc-eQTL 8.16e-01 0.0169 0.0723 0.53 CD4T L1
ENSG00000116641 DOCK7 690913 sc-eQTL 1.53e-01 -0.104 0.0728 0.53 CD4T L1
ENSG00000125703 ATG4C 595167 sc-eQTL 7.45e-01 0.0193 0.0591 0.53 CD4T L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.33e-12 -0.556 0.0746 0.53 CD4T L1
ENSG00000162607 USP1 943002 sc-eQTL 1.49e-01 -0.0826 0.057 0.53 CD4T L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 8.36e-03 -0.197 0.074 0.53 CD4T L1
ENSG00000079739 PGM1 -214112 sc-eQTL 6.10e-01 0.0371 0.0725 0.53 CD8T L1
ENSG00000088035 ALG6 11724 sc-eQTL 2.21e-02 -0.182 0.079 0.53 CD8T L1
ENSG00000116641 DOCK7 690913 sc-eQTL 2.15e-01 0.1 0.0807 0.53 CD8T L1
ENSG00000125703 ATG4C 595167 sc-eQTL 8.50e-01 0.0145 0.0769 0.53 CD8T L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 9.21e-10 -0.505 0.0787 0.53 CD8T L1
ENSG00000162607 USP1 943002 sc-eQTL 9.52e-01 0.00406 0.067 0.53 CD8T L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.61e-05 -0.362 0.0821 0.53 CD8T L1
ENSG00000079739 PGM1 -214112 sc-eQTL 9.86e-01 -0.00141 0.0802 0.527 DC L1
ENSG00000088035 ALG6 11724 sc-eQTL 5.29e-01 0.0521 0.0827 0.527 DC L1
ENSG00000116641 DOCK7 690913 sc-eQTL 7.45e-01 0.0276 0.0848 0.527 DC L1
ENSG00000125703 ATG4C 595167 sc-eQTL 8.38e-01 -0.0136 0.0664 0.527 DC L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.56e-01 -0.0692 0.0926 0.527 DC L1
ENSG00000162607 USP1 943002 sc-eQTL 5.76e-01 0.0453 0.0809 0.527 DC L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.46e-01 -0.117 0.0803 0.527 DC L1
ENSG00000079739 PGM1 -214112 sc-eQTL 8.00e-01 0.0199 0.0783 0.53 Mono L1
ENSG00000088035 ALG6 11724 sc-eQTL 4.32e-01 0.0642 0.0816 0.53 Mono L1
ENSG00000116641 DOCK7 690913 sc-eQTL 1.41e-01 -0.116 0.0786 0.53 Mono L1
ENSG00000125703 ATG4C 595167 sc-eQTL 5.88e-01 0.0289 0.0534 0.53 Mono L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 5.25e-06 -0.376 0.0803 0.53 Mono L1
ENSG00000162607 USP1 943002 sc-eQTL 5.84e-01 -0.038 0.0693 0.53 Mono L1
ENSG00000079739 PGM1 -214112 sc-eQTL 2.65e-01 0.0751 0.0673 0.528 NK L1
ENSG00000088035 ALG6 11724 sc-eQTL 5.82e-01 0.0436 0.079 0.528 NK L1
ENSG00000116641 DOCK7 690913 sc-eQTL 5.54e-01 0.0386 0.0651 0.528 NK L1
ENSG00000125703 ATG4C 595167 sc-eQTL 5.22e-01 0.0448 0.0699 0.528 NK L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.14e-04 -0.317 0.0842 0.528 NK L1
ENSG00000162607 USP1 943002 sc-eQTL 7.40e-01 0.0258 0.0777 0.528 NK L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.85e-01 -0.125 0.094 0.528 NK L1
ENSG00000079739 PGM1 -214112 sc-eQTL 7.09e-01 -0.0285 0.0762 0.53 Other_T L1
ENSG00000088035 ALG6 11724 sc-eQTL 6.43e-01 -0.0355 0.0766 0.53 Other_T L1
ENSG00000116641 DOCK7 690913 sc-eQTL 2.35e-01 0.0928 0.078 0.53 Other_T L1
ENSG00000125703 ATG4C 595167 sc-eQTL 1.15e-02 0.17 0.0667 0.53 Other_T L1
ENSG00000142856 ITGB3BP -214422 sc-eQTL 1.17e-02 -0.15 0.0591 0.53 Other_T L1
ENSG00000162607 USP1 943002 sc-eQTL 7.17e-01 -0.0189 0.052 0.53 Other_T L1
ENSG00000203965 EFCAB7 -144073 sc-eQTL 2.51e-01 -0.106 0.0924 0.53 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -214112 sc-eQTL 3.61e-01 0.0921 0.101 0.531 B_Activated L2
ENSG00000088035 ALG6 11724 sc-eQTL 9.82e-02 0.159 0.0959 0.531 B_Activated L2
ENSG00000116641 DOCK7 690913 sc-eQTL 8.69e-01 0.0149 0.09 0.531 B_Activated L2
ENSG00000125703 ATG4C 595167 sc-eQTL 8.33e-01 0.0199 0.0946 0.531 B_Activated L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.72e-03 -0.265 0.0902 0.531 B_Activated L2
ENSG00000162607 USP1 943002 sc-eQTL 3.55e-01 -0.0927 0.1 0.531 B_Activated L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.80e-02 -0.206 0.0861 0.531 B_Activated L2
ENSG00000079739 PGM1 -214112 sc-eQTL 1.99e-01 0.116 0.0898 0.528 B_Intermediate L2
ENSG00000088035 ALG6 11724 sc-eQTL 1.69e-01 -0.126 0.0911 0.528 B_Intermediate L2
ENSG00000116641 DOCK7 690913 sc-eQTL 8.87e-01 0.0125 0.0874 0.528 B_Intermediate L2
ENSG00000125703 ATG4C 595167 sc-eQTL 7.89e-02 0.13 0.0735 0.528 B_Intermediate L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.76e-03 -0.247 0.0865 0.528 B_Intermediate L2
ENSG00000162607 USP1 943002 sc-eQTL 6.91e-01 0.035 0.088 0.528 B_Intermediate L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.31e-03 -0.278 0.0852 0.528 B_Intermediate L2
ENSG00000079739 PGM1 -214112 sc-eQTL 9.85e-01 -0.00163 0.0889 0.53 B_Memory L2
ENSG00000088035 ALG6 11724 sc-eQTL 6.05e-01 0.0468 0.0903 0.53 B_Memory L2
ENSG00000116641 DOCK7 690913 sc-eQTL 1.55e-01 -0.12 0.0843 0.53 B_Memory L2
ENSG00000125703 ATG4C 595167 sc-eQTL 5.01e-01 -0.0542 0.0804 0.53 B_Memory L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.80e-02 -0.202 0.0911 0.53 B_Memory L2
ENSG00000162607 USP1 943002 sc-eQTL 4.72e-01 -0.0669 0.0928 0.53 B_Memory L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 9.24e-02 -0.154 0.0909 0.53 B_Memory L2
ENSG00000079739 PGM1 -214112 sc-eQTL 9.16e-02 0.15 0.0887 0.53 B_Naive1 L2
ENSG00000088035 ALG6 11724 sc-eQTL 8.81e-01 -0.0135 0.0897 0.53 B_Naive1 L2
ENSG00000116641 DOCK7 690913 sc-eQTL 5.75e-01 0.0482 0.0858 0.53 B_Naive1 L2
ENSG00000125703 ATG4C 595167 sc-eQTL 6.44e-01 0.0306 0.0661 0.53 B_Naive1 L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 5.81e-05 -0.347 0.0845 0.53 B_Naive1 L2
ENSG00000162607 USP1 943002 sc-eQTL 8.20e-01 0.0176 0.0772 0.53 B_Naive1 L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.06e-01 -0.151 0.0931 0.53 B_Naive1 L2
ENSG00000079739 PGM1 -214112 sc-eQTL 4.40e-01 0.0683 0.0882 0.53 B_Naive2 L2
ENSG00000088035 ALG6 11724 sc-eQTL 3.34e-01 0.0891 0.0919 0.53 B_Naive2 L2
ENSG00000116641 DOCK7 690913 sc-eQTL 8.14e-01 -0.0209 0.0886 0.53 B_Naive2 L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.55e-01 -0.121 0.0849 0.53 B_Naive2 L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.43e-07 -0.454 0.087 0.53 B_Naive2 L2
ENSG00000162607 USP1 943002 sc-eQTL 1.68e-01 0.121 0.0876 0.53 B_Naive2 L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 2.90e-01 0.0974 0.0918 0.53 B_Naive2 L2
ENSG00000079739 PGM1 -214112 sc-eQTL 9.37e-01 -0.00699 0.089 0.525 CD4_CTL L2
ENSG00000088035 ALG6 11724 sc-eQTL 8.15e-01 -0.022 0.0941 0.525 CD4_CTL L2
ENSG00000116641 DOCK7 690913 sc-eQTL 2.71e-01 0.0906 0.082 0.525 CD4_CTL L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.77e-01 0.115 0.0847 0.525 CD4_CTL L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 7.59e-01 -0.028 0.091 0.525 CD4_CTL L2
ENSG00000162607 USP1 943002 sc-eQTL 7.29e-01 -0.0301 0.0866 0.525 CD4_CTL L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 8.76e-01 0.0136 0.0865 0.525 CD4_CTL L2
ENSG00000079739 PGM1 -214112 sc-eQTL 2.41e-01 0.0854 0.0727 0.53 CD4_Naive L2
ENSG00000088035 ALG6 11724 sc-eQTL 9.35e-01 0.00651 0.0792 0.53 CD4_Naive L2
ENSG00000116641 DOCK7 690913 sc-eQTL 1.55e-01 -0.111 0.0775 0.53 CD4_Naive L2
ENSG00000125703 ATG4C 595167 sc-eQTL 8.31e-01 0.0147 0.0688 0.53 CD4_Naive L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.74e-12 -0.55 0.0751 0.53 CD4_Naive L2
ENSG00000162607 USP1 943002 sc-eQTL 4.97e-01 -0.0436 0.0642 0.53 CD4_Naive L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 6.61e-02 -0.153 0.0828 0.53 CD4_Naive L2
ENSG00000079739 PGM1 -214112 sc-eQTL 9.00e-01 0.00969 0.0767 0.53 CD4_TCM L2
ENSG00000088035 ALG6 11724 sc-eQTL 9.28e-01 0.00807 0.0891 0.53 CD4_TCM L2
ENSG00000116641 DOCK7 690913 sc-eQTL 7.10e-02 -0.142 0.0783 0.53 CD4_TCM L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.54e-01 -0.109 0.0765 0.53 CD4_TCM L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 8.75e-06 -0.394 0.0864 0.53 CD4_TCM L2
ENSG00000162607 USP1 943002 sc-eQTL 1.11e-01 -0.118 0.0738 0.53 CD4_TCM L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 2.09e-03 -0.267 0.0857 0.53 CD4_TCM L2
ENSG00000079739 PGM1 -214112 sc-eQTL 1.86e-02 0.211 0.089 0.53 CD4_TEM L2
ENSG00000088035 ALG6 11724 sc-eQTL 7.63e-01 0.0274 0.0906 0.53 CD4_TEM L2
ENSG00000116641 DOCK7 690913 sc-eQTL 6.11e-01 -0.045 0.0883 0.53 CD4_TEM L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.98e-01 0.11 0.0855 0.53 CD4_TEM L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 5.46e-03 -0.244 0.0869 0.53 CD4_TEM L2
ENSG00000162607 USP1 943002 sc-eQTL 7.31e-02 -0.15 0.0833 0.53 CD4_TEM L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 4.24e-01 -0.0735 0.0916 0.53 CD4_TEM L2
ENSG00000079739 PGM1 -214112 sc-eQTL 8.96e-01 -0.0108 0.0826 0.53 CD8_CTL L2
ENSG00000088035 ALG6 11724 sc-eQTL 2.24e-02 -0.2 0.0867 0.53 CD8_CTL L2
ENSG00000116641 DOCK7 690913 sc-eQTL 6.73e-01 0.0352 0.0833 0.53 CD8_CTL L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.95e-02 0.192 0.0877 0.53 CD8_CTL L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 6.95e-04 -0.309 0.0897 0.53 CD8_CTL L2
ENSG00000162607 USP1 943002 sc-eQTL 3.13e-01 0.0833 0.0824 0.53 CD8_CTL L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 8.63e-02 -0.162 0.0938 0.53 CD8_CTL L2
ENSG00000079739 PGM1 -214112 sc-eQTL 1.23e-02 0.207 0.0819 0.53 CD8_Naive L2
ENSG00000088035 ALG6 11724 sc-eQTL 3.76e-01 -0.0762 0.0858 0.53 CD8_Naive L2
ENSG00000116641 DOCK7 690913 sc-eQTL 3.84e-01 0.0775 0.0888 0.53 CD8_Naive L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.97e-01 -0.11 0.085 0.53 CD8_Naive L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.11e-08 -0.462 0.0804 0.53 CD8_Naive L2
ENSG00000162607 USP1 943002 sc-eQTL 7.45e-02 -0.13 0.0725 0.53 CD8_Naive L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 2.05e-01 -0.103 0.0812 0.53 CD8_Naive L2
ENSG00000079739 PGM1 -214112 sc-eQTL 7.46e-01 -0.0296 0.0913 0.535 CD8_TCM L2
ENSG00000088035 ALG6 11724 sc-eQTL 7.90e-01 -0.0247 0.0924 0.535 CD8_TCM L2
ENSG00000116641 DOCK7 690913 sc-eQTL 7.88e-01 -0.0242 0.0902 0.535 CD8_TCM L2
ENSG00000125703 ATG4C 595167 sc-eQTL 4.64e-01 -0.0676 0.0921 0.535 CD8_TCM L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.08e-02 -0.193 0.0886 0.535 CD8_TCM L2
ENSG00000162607 USP1 943002 sc-eQTL 1.58e-01 -0.122 0.0858 0.535 CD8_TCM L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.53e-01 -0.13 0.0909 0.535 CD8_TCM L2
ENSG00000079739 PGM1 -214112 sc-eQTL 1.05e-01 -0.148 0.0912 0.514 CD8_TEM L2
ENSG00000088035 ALG6 11724 sc-eQTL 7.22e-01 -0.0328 0.0921 0.514 CD8_TEM L2
ENSG00000116641 DOCK7 690913 sc-eQTL 9.52e-01 -0.00543 0.0893 0.514 CD8_TEM L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.62e-02 0.19 0.0848 0.514 CD8_TEM L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.47e-01 -0.0875 0.0928 0.514 CD8_TEM L2
ENSG00000162607 USP1 943002 sc-eQTL 3.14e-01 0.0893 0.0885 0.514 CD8_TEM L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 3.30e-02 -0.191 0.0891 0.514 CD8_TEM L2
ENSG00000079739 PGM1 -214112 sc-eQTL 7.78e-01 -0.025 0.0886 0.526 MAIT L2
ENSG00000088035 ALG6 11724 sc-eQTL 9.87e-01 -0.0014 0.0877 0.526 MAIT L2
ENSG00000116641 DOCK7 690913 sc-eQTL 7.43e-01 0.0275 0.084 0.526 MAIT L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.89e-02 0.193 0.0876 0.526 MAIT L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 9.76e-04 -0.289 0.0865 0.526 MAIT L2
ENSG00000162607 USP1 943002 sc-eQTL 9.19e-01 -0.00893 0.0881 0.526 MAIT L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 7.94e-01 -0.0239 0.0914 0.526 MAIT L2
ENSG00000079739 PGM1 -214112 sc-eQTL 5.79e-01 0.0491 0.0884 0.531 NK_CD56bright L2
ENSG00000088035 ALG6 11724 sc-eQTL 1.32e-01 0.136 0.0902 0.531 NK_CD56bright L2
ENSG00000116641 DOCK7 690913 sc-eQTL 8.08e-01 0.0191 0.0786 0.531 NK_CD56bright L2
ENSG00000125703 ATG4C 595167 sc-eQTL 8.82e-01 0.013 0.0878 0.531 NK_CD56bright L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.42e-01 -0.0704 0.0913 0.531 NK_CD56bright L2
ENSG00000162607 USP1 943002 sc-eQTL 7.89e-01 0.0253 0.0943 0.531 NK_CD56bright L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.30e-01 -0.136 0.0897 0.531 NK_CD56bright L2
ENSG00000079739 PGM1 -214112 sc-eQTL 4.85e-01 0.0487 0.0696 0.528 NK_CD56dim L2
ENSG00000088035 ALG6 11724 sc-eQTL 6.02e-01 -0.0461 0.0883 0.528 NK_CD56dim L2
ENSG00000116641 DOCK7 690913 sc-eQTL 6.76e-01 0.0322 0.0769 0.528 NK_CD56dim L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.46e-01 -0.0907 0.0779 0.528 NK_CD56dim L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 5.54e-02 -0.17 0.0881 0.528 NK_CD56dim L2
ENSG00000162607 USP1 943002 sc-eQTL 7.68e-01 0.0254 0.0862 0.528 NK_CD56dim L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 4.33e-01 -0.0753 0.0959 0.528 NK_CD56dim L2
ENSG00000079739 PGM1 -214112 sc-eQTL 5.64e-01 -0.0553 0.0957 0.534 NK_HLA L2
ENSG00000088035 ALG6 11724 sc-eQTL 3.72e-01 0.0886 0.0991 0.534 NK_HLA L2
ENSG00000116641 DOCK7 690913 sc-eQTL 3.83e-01 -0.0663 0.0758 0.534 NK_HLA L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.74e-01 0.0966 0.0881 0.534 NK_HLA L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.91e-02 -0.201 0.0916 0.534 NK_HLA L2
ENSG00000162607 USP1 943002 sc-eQTL 9.70e-01 0.0036 0.097 0.534 NK_HLA L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 7.21e-01 0.0316 0.0883 0.534 NK_HLA L2
ENSG00000079739 PGM1 -214112 sc-eQTL 4.17e-01 0.0625 0.0768 0.528 NK_cytokine L2
ENSG00000088035 ALG6 11724 sc-eQTL 6.74e-01 0.0366 0.0869 0.528 NK_cytokine L2
ENSG00000116641 DOCK7 690913 sc-eQTL 5.11e-01 0.053 0.0804 0.528 NK_cytokine L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.50e-01 0.118 0.082 0.528 NK_cytokine L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.57e-04 -0.295 0.0828 0.528 NK_cytokine L2
ENSG00000162607 USP1 943002 sc-eQTL 1.68e-01 0.124 0.0893 0.528 NK_cytokine L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 5.49e-01 -0.0545 0.0908 0.528 NK_cytokine L2
ENSG00000079739 PGM1 -214112 sc-eQTL 6.52e-02 -0.203 0.109 0.541 PB L2
ENSG00000088035 ALG6 11724 sc-eQTL 4.50e-01 0.0879 0.116 0.541 PB L2
ENSG00000116641 DOCK7 690913 sc-eQTL 1.32e-01 -0.186 0.123 0.541 PB L2
ENSG00000125703 ATG4C 595167 sc-eQTL 5.43e-01 0.0661 0.108 0.541 PB L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 6.74e-02 -0.197 0.107 0.541 PB L2
ENSG00000162607 USP1 943002 sc-eQTL 9.07e-01 0.0126 0.108 0.541 PB L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 4.08e-01 -0.0984 0.118 0.541 PB L2
ENSG00000079739 PGM1 -214112 sc-eQTL 9.42e-01 -0.00597 0.0822 0.528 Pro_T L2
ENSG00000088035 ALG6 11724 sc-eQTL 6.46e-01 -0.0385 0.0835 0.528 Pro_T L2
ENSG00000116641 DOCK7 690913 sc-eQTL 3.78e-01 -0.074 0.0837 0.528 Pro_T L2
ENSG00000125703 ATG4C 595167 sc-eQTL 6.51e-01 -0.0332 0.0734 0.528 Pro_T L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 1.18e-01 0.115 0.0732 0.528 Pro_T L2
ENSG00000162607 USP1 943002 sc-eQTL 8.16e-01 -0.0118 0.0506 0.528 Pro_T L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 6.35e-01 0.0407 0.0855 0.528 Pro_T L2
ENSG00000079739 PGM1 -214112 sc-eQTL 3.06e-01 0.0884 0.0861 0.53 Treg L2
ENSG00000088035 ALG6 11724 sc-eQTL 1.68e-01 0.127 0.0919 0.53 Treg L2
ENSG00000116641 DOCK7 690913 sc-eQTL 4.18e-01 0.0687 0.0846 0.53 Treg L2
ENSG00000125703 ATG4C 595167 sc-eQTL 4.74e-01 0.062 0.0865 0.53 Treg L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 7.80e-01 -0.0253 0.0906 0.53 Treg L2
ENSG00000162607 USP1 943002 sc-eQTL 3.02e-01 0.0903 0.0874 0.53 Treg L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 7.64e-01 -0.026 0.0866 0.53 Treg L2
ENSG00000079739 PGM1 -214112 sc-eQTL 5.94e-01 -0.0462 0.0866 0.522 cDC L2
ENSG00000088035 ALG6 11724 sc-eQTL 3.68e-01 -0.0791 0.0876 0.522 cDC L2
ENSG00000116641 DOCK7 690913 sc-eQTL 5.96e-01 0.0457 0.0861 0.522 cDC L2
ENSG00000125703 ATG4C 595167 sc-eQTL 6.53e-01 0.0337 0.0748 0.522 cDC L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 9.25e-01 0.00894 0.0949 0.522 cDC L2
ENSG00000162607 USP1 943002 sc-eQTL 7.75e-01 -0.0242 0.0844 0.522 cDC L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 4.45e-01 -0.0583 0.0761 0.522 cDC L2
ENSG00000079739 PGM1 -214112 sc-eQTL 8.66e-01 0.0137 0.081 0.53 cMono_IL1B L2
ENSG00000088035 ALG6 11724 sc-eQTL 6.65e-01 0.0351 0.081 0.53 cMono_IL1B L2
ENSG00000116641 DOCK7 690913 sc-eQTL 2.16e-01 -0.106 0.0852 0.53 cMono_IL1B L2
ENSG00000125703 ATG4C 595167 sc-eQTL 8.26e-01 0.0132 0.0601 0.53 cMono_IL1B L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.86e-05 -0.344 0.0818 0.53 cMono_IL1B L2
ENSG00000162607 USP1 943002 sc-eQTL 9.25e-01 0.00712 0.0751 0.53 cMono_IL1B L2
ENSG00000079739 PGM1 -214112 sc-eQTL 7.05e-01 0.0343 0.0907 0.53 cMono_S100A L2
ENSG00000088035 ALG6 11724 sc-eQTL 8.06e-01 0.0226 0.0919 0.53 cMono_S100A L2
ENSG00000116641 DOCK7 690913 sc-eQTL 9.84e-01 0.00172 0.0852 0.53 cMono_S100A L2
ENSG00000125703 ATG4C 595167 sc-eQTL 3.69e-01 0.0662 0.0736 0.53 cMono_S100A L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.28e-01 -0.1 0.083 0.53 cMono_S100A L2
ENSG00000162607 USP1 943002 sc-eQTL 1.73e-01 -0.117 0.0853 0.53 cMono_S100A L2
ENSG00000079739 PGM1 -214112 sc-eQTL 8.06e-01 0.0244 0.0993 0.539 gdT L2
ENSG00000088035 ALG6 11724 sc-eQTL 4.90e-01 -0.0731 0.106 0.539 gdT L2
ENSG00000116641 DOCK7 690913 sc-eQTL 2.71e-02 0.228 0.102 0.539 gdT L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.15e-01 0.123 0.0986 0.539 gdT L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.02e-02 -0.215 0.104 0.539 gdT L2
ENSG00000162607 USP1 943002 sc-eQTL 3.76e-01 -0.0884 0.0994 0.539 gdT L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 3.33e-01 0.1 0.103 0.539 gdT L2
ENSG00000079739 PGM1 -214112 sc-eQTL 5.93e-01 0.0496 0.0926 0.527 intMono L2
ENSG00000088035 ALG6 11724 sc-eQTL 8.27e-01 0.0189 0.0863 0.527 intMono L2
ENSG00000116641 DOCK7 690913 sc-eQTL 7.25e-01 -0.0311 0.0881 0.527 intMono L2
ENSG00000125703 ATG4C 595167 sc-eQTL 1.50e-01 0.121 0.0837 0.527 intMono L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.87e-03 -0.265 0.0908 0.527 intMono L2
ENSG00000162607 USP1 943002 sc-eQTL 8.58e-01 -0.0169 0.0943 0.527 intMono L2
ENSG00000079739 PGM1 -214112 sc-eQTL 7.09e-01 0.0306 0.0818 0.532 ncMono L2
ENSG00000088035 ALG6 11724 sc-eQTL 2.75e-01 -0.0982 0.0897 0.532 ncMono L2
ENSG00000116641 DOCK7 690913 sc-eQTL 6.61e-01 -0.0389 0.0885 0.532 ncMono L2
ENSG00000125703 ATG4C 595167 sc-eQTL 2.60e-01 -0.0931 0.0824 0.532 ncMono L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 1.79e-02 -0.204 0.0853 0.532 ncMono L2
ENSG00000162607 USP1 943002 sc-eQTL 3.81e-01 0.0774 0.0882 0.532 ncMono L2
ENSG00000079739 PGM1 -214112 sc-eQTL 6.20e-01 -0.049 0.0984 0.514 pDC L2
ENSG00000088035 ALG6 11724 sc-eQTL 4.00e-01 0.0808 0.0957 0.514 pDC L2
ENSG00000116641 DOCK7 690913 sc-eQTL 4.63e-01 -0.0719 0.0978 0.514 pDC L2
ENSG00000125703 ATG4C 595167 sc-eQTL 9.00e-01 -0.011 0.0879 0.514 pDC L2
ENSG00000142856 ITGB3BP -214422 sc-eQTL 6.72e-01 -0.0419 0.0986 0.514 pDC L2
ENSG00000162607 USP1 943002 sc-eQTL 1.69e-01 0.138 0.1 0.514 pDC L2
ENSG00000203965 EFCAB7 -144073 sc-eQTL 7.97e-01 -0.0225 0.0873 0.514 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -214112 sc-eQTL 2.75e-01 0.0922 0.0842 0.53 B_Memory LOneK1K
ENSG00000088035 ALG6 11724 sc-eQTL 6.13e-01 -0.0472 0.0933 0.53 B_Memory LOneK1K
ENSG00000116641 DOCK7 690913 sc-eQTL 3.58e-01 -0.0744 0.0809 0.53 B_Memory LOneK1K
ENSG00000125703 ATG4C 595167 sc-eQTL 2.88e-01 0.0695 0.0653 0.53 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -214422 sc-eQTL 5.59e-04 -0.293 0.0837 0.53 B_Memory LOneK1K
ENSG00000162607 USP1 943002 sc-eQTL 9.17e-01 0.00868 0.0836 0.53 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -144073 sc-eQTL 1.58e-05 -0.379 0.0858 0.53 B_Memory LOneK1K
ENSG00000079739 PGM1 -214112 sc-eQTL 6.39e-02 0.161 0.0866 0.53 B_Naive LOneK1K
ENSG00000088035 ALG6 11724 sc-eQTL 7.20e-01 0.0323 0.0898 0.53 B_Naive LOneK1K
ENSG00000116641 DOCK7 690913 sc-eQTL 8.73e-01 0.0134 0.0839 0.53 B_Naive LOneK1K
ENSG00000125703 ATG4C 595167 sc-eQTL 5.43e-01 -0.039 0.064 0.53 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.78e-07 -0.443 0.0852 0.53 B_Naive LOneK1K
ENSG00000162607 USP1 943002 sc-eQTL 2.24e-01 0.0945 0.0775 0.53 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -144073 sc-eQTL 4.60e-01 -0.0672 0.0909 0.53 B_Naive LOneK1K
ENSG00000079739 PGM1 -214112 sc-eQTL 7.42e-01 0.0274 0.0832 0.53 CD14_Mono LOneK1K
ENSG00000088035 ALG6 11724 sc-eQTL 6.63e-01 0.0351 0.0805 0.53 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 690913 sc-eQTL 1.73e-01 -0.11 0.0808 0.53 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 595167 sc-eQTL 5.92e-01 0.0301 0.056 0.53 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -214422 sc-eQTL 3.02e-04 -0.296 0.0804 0.53 CD14_Mono LOneK1K
ENSG00000162607 USP1 943002 sc-eQTL 2.61e-01 -0.0797 0.0706 0.53 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -214112 sc-eQTL 6.80e-01 0.0333 0.0805 0.528 CD16_Mono LOneK1K
ENSG00000088035 ALG6 11724 sc-eQTL 8.96e-01 -0.0119 0.0914 0.528 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 690913 sc-eQTL 3.12e-01 -0.0915 0.0902 0.528 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 595167 sc-eQTL 8.90e-01 -0.0107 0.0771 0.528 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -214422 sc-eQTL 4.15e-05 -0.36 0.086 0.528 CD16_Mono LOneK1K
ENSG00000162607 USP1 943002 sc-eQTL 8.88e-01 0.0118 0.0841 0.528 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -214112 sc-eQTL 4.09e-01 0.0565 0.0683 0.528 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 11724 sc-eQTL 8.53e-01 0.0152 0.0821 0.528 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 690913 sc-eQTL 4.75e-01 0.0526 0.0735 0.528 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 595167 sc-eQTL 5.37e-01 0.0454 0.0734 0.528 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -214422 sc-eQTL 2.20e-04 -0.317 0.0842 0.528 NK_CD56dim LOneK1K
ENSG00000162607 USP1 943002 sc-eQTL 4.88e-01 0.0548 0.0789 0.528 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -144073 sc-eQTL 3.31e-01 -0.0935 0.0959 0.528 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -214112 eQTL 1.29e-13 0.13 0.0173 0.0 0.0 0.468
ENSG00000088035 ALG6 11724 eQTL 0.000301 0.0477 0.0132 0.0 0.0 0.468
ENSG00000116641 DOCK7 690931 eQTL 0.00654 -0.06 0.022 0.00248 0.0 0.468
ENSG00000116652 DLEU2L -167783 eQTL 0.0342 -0.0548 0.0258 0.0 0.0 0.468
ENSG00000185483 ROR1 -394718 pQTL 0.0251 0.0297 0.0132 0.0 0.0 0.465
ENSG00000203965 EFCAB7 -144073 eQTL 6.18e-05 -0.0957 0.0238 0.0 0.0 0.468
ENSG00000230798 FOXD3-AS1 54858 eQTL 0.0116 0.0656 0.026 0.0 0.0 0.468

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -214112 1.97e-06 2.59e-06 2.88e-07 1.7e-06 5.1e-07 8.24e-07 1.3e-06 6.11e-07 1.66e-06 7.34e-07 1.93e-06 1.47e-06 3.25e-06 8.78e-07 4.99e-07 1.04e-06 1.04e-06 1.34e-06 5.7e-07 8.15e-07 7.69e-07 1.92e-06 1.71e-06 9.6e-07 2.63e-06 1.12e-06 1.18e-06 1.12e-06 1.68e-06 1.68e-06 1.08e-06 2.78e-07 4.73e-07 8.72e-07 9.93e-07 6.72e-07 7.01e-07 4.03e-07 7.27e-07 2.58e-07 3.56e-07 2.35e-06 5.55e-07 2.15e-07 3.55e-07 3.3e-07 4.63e-07 2.25e-07 2.29e-07
ENSG00000162607 \N 943002 2.69e-07 1.25e-07 3.69e-08 1.81e-07 9.16e-08 9.9e-08 1.44e-07 5.48e-08 1.44e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.56e-08 5.99e-08 7.37e-08 4.17e-08 1.21e-07 5.36e-08 4.04e-08 1.19e-07 1.27e-07 1.39e-07 3.49e-08 1.37e-07 1.14e-07 1.07e-07 9.57e-08 1.08e-07 1.07e-07 9.64e-08 2.9e-08 3.96e-08 8.44e-08 6.34e-08 3.62e-08 5.37e-08 9.03e-08 6.55e-08 3.86e-08 3.57e-08 1.31e-07 5.27e-08 1.25e-08 4.67e-08 1.86e-08 1.22e-07 1.88e-09 5.04e-08