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Genes within 1Mb (chr1:63363049:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -230362 sc-eQTL 1.78e-01 -0.249 0.184 0.052 DC L1
ENSG00000088035 ALG6 -4526 sc-eQTL 9.22e-01 0.0188 0.191 0.052 DC L1
ENSG00000116641 DOCK7 674663 sc-eQTL 5.41e-01 -0.12 0.196 0.052 DC L1
ENSG00000125703 ATG4C 578917 sc-eQTL 2.16e-01 -0.19 0.153 0.052 DC L1
ENSG00000142856 ITGB3BP -230672 sc-eQTL 4.42e-01 -0.165 0.214 0.052 DC L1
ENSG00000162607 USP1 926752 sc-eQTL 7.75e-01 -0.0535 0.187 0.052 DC L1
ENSG00000203965 EFCAB7 -160323 sc-eQTL 9.16e-01 -0.0198 0.186 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -230362 sc-eQTL 8.19e-01 -0.0469 0.204 0.051 NK_CD56bright L2
ENSG00000088035 ALG6 -4526 sc-eQTL 7.41e-01 -0.0694 0.21 0.051 NK_CD56bright L2
ENSG00000116641 DOCK7 674663 sc-eQTL 1.69e-01 0.249 0.181 0.051 NK_CD56bright L2
ENSG00000125703 ATG4C 578917 sc-eQTL 3.51e-01 0.189 0.202 0.051 NK_CD56bright L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 9.27e-02 0.354 0.21 0.051 NK_CD56bright L2
ENSG00000162607 USP1 926752 sc-eQTL 3.09e-01 -0.221 0.217 0.051 NK_CD56bright L2
ENSG00000203965 EFCAB7 -160323 sc-eQTL 4.63e-01 -0.153 0.208 0.051 NK_CD56bright L2
ENSG00000079739 PGM1 -230362 sc-eQTL 3.02e-01 -0.222 0.214 0.053 NK_HLA L2
ENSG00000088035 ALG6 -4526 sc-eQTL 3.07e-01 0.228 0.222 0.053 NK_HLA L2
ENSG00000116641 DOCK7 674663 sc-eQTL 8.17e-01 0.0394 0.17 0.053 NK_HLA L2
ENSG00000125703 ATG4C 578917 sc-eQTL 7.51e-01 -0.063 0.198 0.053 NK_HLA L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 1.12e-01 -0.33 0.207 0.053 NK_HLA L2
ENSG00000162607 USP1 926752 sc-eQTL 4.75e-01 0.155 0.217 0.053 NK_HLA L2
ENSG00000203965 EFCAB7 -160323 sc-eQTL 2.86e-01 -0.211 0.197 0.053 NK_HLA L2
ENSG00000079739 PGM1 -230362 sc-eQTL 2.80e-01 -0.215 0.199 0.054 cDC L2
ENSG00000088035 ALG6 -4526 sc-eQTL 5.98e-01 -0.107 0.202 0.054 cDC L2
ENSG00000116641 DOCK7 674663 sc-eQTL 9.00e-01 0.025 0.199 0.054 cDC L2
ENSG00000125703 ATG4C 578917 sc-eQTL 4.10e-01 -0.142 0.172 0.054 cDC L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 3.88e-01 -0.189 0.218 0.054 cDC L2
ENSG00000162607 USP1 926752 sc-eQTL 9.27e-01 0.0179 0.195 0.054 cDC L2
ENSG00000203965 EFCAB7 -160323 sc-eQTL 9.94e-01 0.00131 0.176 0.054 cDC L2
ENSG00000079739 PGM1 -230362 sc-eQTL 7.33e-01 0.0786 0.23 0.055 gdT L2
ENSG00000088035 ALG6 -4526 sc-eQTL 2.77e-01 0.266 0.244 0.055 gdT L2
ENSG00000116641 DOCK7 674663 sc-eQTL 9.87e-01 -0.00378 0.24 0.055 gdT L2
ENSG00000125703 ATG4C 578917 sc-eQTL 3.22e-01 0.227 0.229 0.055 gdT L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 1.52e-01 0.348 0.242 0.055 gdT L2
ENSG00000162607 USP1 926752 sc-eQTL 3.08e-01 -0.235 0.23 0.055 gdT L2
ENSG00000203965 EFCAB7 -160323 sc-eQTL 1.18e-01 -0.374 0.238 0.055 gdT L2
ENSG00000079739 PGM1 -230362 sc-eQTL 4.00e-01 0.157 0.186 0.052 ncMono L2
ENSG00000088035 ALG6 -4526 sc-eQTL 8.21e-01 -0.0464 0.205 0.052 ncMono L2
ENSG00000116641 DOCK7 674663 sc-eQTL 7.20e-01 -0.0725 0.202 0.052 ncMono L2
ENSG00000125703 ATG4C 578917 sc-eQTL 1.16e-01 -0.295 0.187 0.052 ncMono L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 6.70e-01 -0.0841 0.197 0.052 ncMono L2
ENSG00000162607 USP1 926752 sc-eQTL 8.35e-01 -0.042 0.201 0.052 ncMono L2
ENSG00000079739 PGM1 -230362 sc-eQTL 7.47e-01 0.0788 0.244 0.051 pDC L2
ENSG00000088035 ALG6 -4526 sc-eQTL 3.07e-01 -0.242 0.237 0.051 pDC L2
ENSG00000116641 DOCK7 674663 sc-eQTL 5.94e-02 -0.455 0.24 0.051 pDC L2
ENSG00000125703 ATG4C 578917 sc-eQTL 1.58e-01 -0.307 0.216 0.051 pDC L2
ENSG00000142856 ITGB3BP -230672 sc-eQTL 2.62e-01 0.274 0.243 0.051 pDC L2
ENSG00000162607 USP1 926752 sc-eQTL 9.87e-01 0.00397 0.249 0.051 pDC L2
ENSG00000203965 EFCAB7 -160323 sc-eQTL 6.81e-01 0.0888 0.216 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -230362 eQTL 0.00865 0.101 0.0384 0.0 0.0 0.0545

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -230362 3.58e-06 3.09e-06 7.29e-07 1.8e-06 7.65e-07 1.01e-06 2.52e-06 5.97e-07 3.03e-06 2.01e-06 3.13e-06 3.04e-06 6.2e-06 1.33e-06 1.2e-06 2.27e-06 1.58e-06 2.7e-06 1.47e-06 9.89e-07 2.91e-06 3.58e-06 3.32e-06 1.44e-06 4.83e-06 1.21e-06 1.8e-06 1.48e-06 3.77e-06 2.81e-06 2.02e-06 4.51e-07 6.26e-07 1.76e-06 1.76e-06 8.95e-07 8.91e-07 4.24e-07 1.32e-06 3.45e-07 5.68e-07 3.84e-06 4.9e-07 1.56e-07 3.46e-07 3.75e-07 9.64e-07 3.18e-07 3.43e-07
ENSG00000116652 \N -184033 4.64e-06 4.93e-06 1.04e-06 3.42e-06 1.62e-06 1.58e-06 6.05e-06 8.89e-07 5.05e-06 3.09e-06 5.29e-06 2.97e-06 7.67e-06 1.92e-06 1.13e-06 3.99e-06 1.81e-06 3.95e-06 1.94e-06 1.48e-06 2.85e-06 4.73e-06 4.66e-06 1.36e-06 8.19e-06 1.48e-06 2.29e-06 1.55e-06 4.47e-06 4.43e-06 2.64e-06 4.38e-07 5.05e-07 1.65e-06 1.96e-06 1.07e-06 9.67e-07 6.03e-07 8.1e-07 5.79e-07 8.74e-07 5.59e-06 8.97e-07 1.33e-07 6.11e-07 1.12e-06 1.05e-06 6.58e-07 6.2e-07