logo

Genes within 1Mb (chr1:63339705:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -253706 sc-eQTL 4.62e-01 -0.0609 0.0827 0.618 B L1
ENSG00000088035 ALG6 -27870 sc-eQTL 3.37e-01 0.0824 0.0856 0.618 B L1
ENSG00000116641 DOCK7 651319 sc-eQTL 3.41e-01 0.0816 0.0856 0.618 B L1
ENSG00000125703 ATG4C 555573 sc-eQTL 5.07e-01 0.0396 0.0596 0.618 B L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 2.82e-06 -0.433 0.0901 0.618 B L1
ENSG00000162607 USP1 903408 sc-eQTL 7.00e-01 0.0318 0.0823 0.618 B L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 1.88e-01 -0.128 0.0968 0.618 B L1
ENSG00000079739 PGM1 -253706 sc-eQTL 8.98e-01 0.009 0.0701 0.618 CD4T L1
ENSG00000088035 ALG6 -27870 sc-eQTL 4.47e-01 0.0589 0.0773 0.618 CD4T L1
ENSG00000116641 DOCK7 651319 sc-eQTL 8.20e-01 -0.0178 0.0783 0.618 CD4T L1
ENSG00000125703 ATG4C 555573 sc-eQTL 6.60e-01 -0.0278 0.0632 0.618 CD4T L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.04e-04 -0.32 0.0871 0.618 CD4T L1
ENSG00000162607 USP1 903408 sc-eQTL 6.69e-02 -0.112 0.0609 0.618 CD4T L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 6.46e-03 -0.218 0.0792 0.618 CD4T L1
ENSG00000079739 PGM1 -253706 sc-eQTL 1.42e-01 -0.113 0.0765 0.618 CD8T L1
ENSG00000088035 ALG6 -27870 sc-eQTL 2.19e-01 -0.104 0.0844 0.618 CD8T L1
ENSG00000116641 DOCK7 651319 sc-eQTL 4.26e-01 0.0683 0.0857 0.618 CD8T L1
ENSG00000125703 ATG4C 555573 sc-eQTL 8.49e-01 -0.0155 0.0815 0.618 CD8T L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.12e-06 -0.432 0.0862 0.618 CD8T L1
ENSG00000162607 USP1 903408 sc-eQTL 4.96e-01 -0.0483 0.0709 0.618 CD8T L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.00e-01 -0.116 0.0905 0.618 CD8T L1
ENSG00000079739 PGM1 -253706 sc-eQTL 4.37e-01 -0.0667 0.0856 0.619 DC L1
ENSG00000088035 ALG6 -27870 sc-eQTL 2.48e-01 0.102 0.0882 0.619 DC L1
ENSG00000116641 DOCK7 651319 sc-eQTL 7.79e-01 -0.0254 0.0907 0.619 DC L1
ENSG00000125703 ATG4C 555573 sc-eQTL 6.15e-01 -0.0357 0.0709 0.619 DC L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 7.08e-03 -0.265 0.0974 0.619 DC L1
ENSG00000162607 USP1 903408 sc-eQTL 2.31e-01 -0.104 0.0863 0.619 DC L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 1.16e-02 -0.217 0.085 0.619 DC L1
ENSG00000079739 PGM1 -253706 sc-eQTL 1.63e-01 -0.118 0.0844 0.618 Mono L1
ENSG00000088035 ALG6 -27870 sc-eQTL 4.80e-02 0.174 0.0876 0.618 Mono L1
ENSG00000116641 DOCK7 651319 sc-eQTL 7.34e-01 -0.0291 0.0855 0.618 Mono L1
ENSG00000125703 ATG4C 555573 sc-eQTL 4.55e-01 0.0432 0.0577 0.618 Mono L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.25e-04 -0.345 0.0882 0.618 Mono L1
ENSG00000162607 USP1 903408 sc-eQTL 3.22e-01 -0.0743 0.0749 0.618 Mono L1
ENSG00000079739 PGM1 -253706 sc-eQTL 5.39e-01 0.0439 0.0713 0.618 NK L1
ENSG00000088035 ALG6 -27870 sc-eQTL 1.33e-01 0.125 0.0832 0.618 NK L1
ENSG00000116641 DOCK7 651319 sc-eQTL 6.47e-01 0.0316 0.0688 0.618 NK L1
ENSG00000125703 ATG4C 555573 sc-eQTL 8.61e-01 0.0129 0.074 0.618 NK L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 8.00e-03 -0.242 0.0904 0.618 NK L1
ENSG00000162607 USP1 903408 sc-eQTL 2.35e-01 -0.0976 0.0819 0.618 NK L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 3.10e-01 -0.101 0.0996 0.618 NK L1
ENSG00000079739 PGM1 -253706 sc-eQTL 3.08e-01 0.0827 0.081 0.618 Other_T L1
ENSG00000088035 ALG6 -27870 sc-eQTL 8.04e-01 0.0203 0.0816 0.618 Other_T L1
ENSG00000116641 DOCK7 651319 sc-eQTL 5.06e-03 0.232 0.0817 0.618 Other_T L1
ENSG00000125703 ATG4C 555573 sc-eQTL 8.92e-01 -0.00982 0.0721 0.618 Other_T L1
ENSG00000142856 ITGB3BP -254016 sc-eQTL 7.50e-01 -0.0204 0.0639 0.618 Other_T L1
ENSG00000162607 USP1 903408 sc-eQTL 9.32e-01 0.0047 0.0554 0.618 Other_T L1
ENSG00000203965 EFCAB7 -183667 sc-eQTL 1.30e-01 0.149 0.0981 0.618 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -253706 sc-eQTL 8.51e-01 -0.0201 0.107 0.633 B_Activated L2
ENSG00000088035 ALG6 -27870 sc-eQTL 2.36e-01 0.121 0.102 0.633 B_Activated L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.49e-01 0.0305 0.0952 0.633 B_Activated L2
ENSG00000125703 ATG4C 555573 sc-eQTL 5.60e-01 0.0584 0.1 0.633 B_Activated L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.17e-02 -0.209 0.0965 0.633 B_Activated L2
ENSG00000162607 USP1 903408 sc-eQTL 8.28e-01 0.0231 0.106 0.633 B_Activated L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 5.97e-01 -0.049 0.0925 0.633 B_Activated L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.06e-01 0.0116 0.0983 0.616 B_Intermediate L2
ENSG00000088035 ALG6 -27870 sc-eQTL 9.49e-01 -0.00641 0.0999 0.616 B_Intermediate L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.47e-01 0.0308 0.0954 0.616 B_Intermediate L2
ENSG00000125703 ATG4C 555573 sc-eQTL 4.78e-01 -0.0574 0.0807 0.616 B_Intermediate L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.45e-03 -0.303 0.0939 0.616 B_Intermediate L2
ENSG00000162607 USP1 903408 sc-eQTL 9.07e-01 -0.0113 0.0961 0.616 B_Intermediate L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.05e-01 -0.121 0.0949 0.616 B_Intermediate L2
ENSG00000079739 PGM1 -253706 sc-eQTL 2.73e-01 -0.104 0.0949 0.616 B_Memory L2
ENSG00000088035 ALG6 -27870 sc-eQTL 8.44e-01 -0.019 0.0968 0.616 B_Memory L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.45e-01 -0.0419 0.0907 0.616 B_Memory L2
ENSG00000125703 ATG4C 555573 sc-eQTL 2.55e-01 0.0981 0.086 0.616 B_Memory L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 8.22e-02 -0.171 0.098 0.616 B_Memory L2
ENSG00000162607 USP1 903408 sc-eQTL 8.64e-01 -0.0171 0.0996 0.616 B_Memory L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 7.80e-01 0.0274 0.098 0.616 B_Memory L2
ENSG00000079739 PGM1 -253706 sc-eQTL 5.52e-01 -0.0583 0.0978 0.618 B_Naive1 L2
ENSG00000088035 ALG6 -27870 sc-eQTL 8.51e-01 -0.0184 0.0983 0.618 B_Naive1 L2
ENSG00000116641 DOCK7 651319 sc-eQTL 4.65e-01 0.0689 0.094 0.618 B_Naive1 L2
ENSG00000125703 ATG4C 555573 sc-eQTL 9.98e-01 -0.000205 0.0725 0.618 B_Naive1 L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.87e-04 -0.354 0.0931 0.618 B_Naive1 L2
ENSG00000162607 USP1 903408 sc-eQTL 6.38e-01 0.0398 0.0845 0.618 B_Naive1 L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 9.56e-02 -0.171 0.102 0.618 B_Naive1 L2
ENSG00000079739 PGM1 -253706 sc-eQTL 4.97e-01 -0.0651 0.0957 0.616 B_Naive2 L2
ENSG00000088035 ALG6 -27870 sc-eQTL 8.67e-01 0.0167 0.0998 0.616 B_Naive2 L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.61e-01 -0.0422 0.096 0.616 B_Naive2 L2
ENSG00000125703 ATG4C 555573 sc-eQTL 9.68e-01 -0.00373 0.0924 0.616 B_Naive2 L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.48e-03 -0.315 0.0978 0.616 B_Naive2 L2
ENSG00000162607 USP1 903408 sc-eQTL 5.83e-01 0.0525 0.0953 0.616 B_Naive2 L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 3.05e-01 0.102 0.0995 0.616 B_Naive2 L2
ENSG00000079739 PGM1 -253706 sc-eQTL 7.30e-01 0.0342 0.0988 0.609 CD4_CTL L2
ENSG00000088035 ALG6 -27870 sc-eQTL 4.10e-01 -0.0861 0.104 0.609 CD4_CTL L2
ENSG00000116641 DOCK7 651319 sc-eQTL 1.93e-01 0.119 0.091 0.609 CD4_CTL L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.26e-01 -0.0331 0.0945 0.609 CD4_CTL L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.36e-01 -0.0973 0.101 0.609 CD4_CTL L2
ENSG00000162607 USP1 903408 sc-eQTL 7.14e-03 -0.257 0.0945 0.609 CD4_CTL L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 8.76e-01 0.015 0.0961 0.609 CD4_CTL L2
ENSG00000079739 PGM1 -253706 sc-eQTL 8.08e-01 0.0193 0.0792 0.618 CD4_Naive L2
ENSG00000088035 ALG6 -27870 sc-eQTL 5.12e-01 0.0565 0.0859 0.618 CD4_Naive L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.65e-01 0.0366 0.0845 0.618 CD4_Naive L2
ENSG00000125703 ATG4C 555573 sc-eQTL 6.37e-01 -0.0353 0.0747 0.618 CD4_Naive L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.14e-03 -0.267 0.0895 0.618 CD4_Naive L2
ENSG00000162607 USP1 903408 sc-eQTL 3.40e-01 -0.0665 0.0696 0.618 CD4_Naive L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 5.04e-02 -0.177 0.0899 0.618 CD4_Naive L2
ENSG00000079739 PGM1 -253706 sc-eQTL 8.63e-01 -0.014 0.0816 0.618 CD4_TCM L2
ENSG00000088035 ALG6 -27870 sc-eQTL 3.23e-01 -0.0935 0.0945 0.618 CD4_TCM L2
ENSG00000116641 DOCK7 651319 sc-eQTL 2.11e-01 -0.105 0.0836 0.618 CD4_TCM L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.39e-02 -0.146 0.0811 0.618 CD4_TCM L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 7.28e-03 -0.257 0.0947 0.618 CD4_TCM L2
ENSG00000162607 USP1 903408 sc-eQTL 4.02e-02 -0.161 0.0782 0.618 CD4_TCM L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 1.51e-03 -0.293 0.091 0.618 CD4_TCM L2
ENSG00000079739 PGM1 -253706 sc-eQTL 1.83e-01 -0.128 0.0957 0.618 CD4_TEM L2
ENSG00000088035 ALG6 -27870 sc-eQTL 8.28e-01 -0.021 0.0966 0.618 CD4_TEM L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.82e-01 -0.0261 0.0942 0.618 CD4_TEM L2
ENSG00000125703 ATG4C 555573 sc-eQTL 1.03e-01 0.149 0.0909 0.618 CD4_TEM L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 7.68e-03 -0.25 0.0929 0.618 CD4_TEM L2
ENSG00000162607 USP1 903408 sc-eQTL 8.22e-02 -0.155 0.0888 0.618 CD4_TEM L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 6.28e-01 0.0475 0.0978 0.618 CD4_TEM L2
ENSG00000079739 PGM1 -253706 sc-eQTL 1.92e-01 -0.115 0.0876 0.618 CD8_CTL L2
ENSG00000088035 ALG6 -27870 sc-eQTL 4.08e-01 -0.0774 0.0934 0.618 CD8_CTL L2
ENSG00000116641 DOCK7 651319 sc-eQTL 8.18e-01 0.0205 0.0888 0.618 CD8_CTL L2
ENSG00000125703 ATG4C 555573 sc-eQTL 4.52e-01 0.0712 0.0944 0.618 CD8_CTL L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.41e-01 -0.144 0.0977 0.618 CD8_CTL L2
ENSG00000162607 USP1 903408 sc-eQTL 2.37e-01 -0.104 0.0877 0.618 CD8_CTL L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 6.80e-01 -0.0415 0.101 0.618 CD8_CTL L2
ENSG00000079739 PGM1 -253706 sc-eQTL 1.92e-01 -0.116 0.0886 0.618 CD8_Naive L2
ENSG00000088035 ALG6 -27870 sc-eQTL 9.77e-01 0.00265 0.0921 0.618 CD8_Naive L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.18e-01 -0.0345 0.0952 0.618 CD8_Naive L2
ENSG00000125703 ATG4C 555573 sc-eQTL 6.71e-01 -0.0389 0.0914 0.618 CD8_Naive L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 7.73e-06 -0.405 0.0883 0.618 CD8_Naive L2
ENSG00000162607 USP1 903408 sc-eQTL 8.72e-01 -0.0127 0.0783 0.618 CD8_Naive L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.04e-01 -0.111 0.087 0.618 CD8_Naive L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.52e-01 -0.00588 0.0977 0.618 CD8_TCM L2
ENSG00000088035 ALG6 -27870 sc-eQTL 9.95e-02 -0.163 0.0982 0.618 CD8_TCM L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.01e-02 0.181 0.0956 0.618 CD8_TCM L2
ENSG00000125703 ATG4C 555573 sc-eQTL 9.95e-01 -0.000593 0.0987 0.618 CD8_TCM L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.50e-01 -0.138 0.0954 0.618 CD8_TCM L2
ENSG00000162607 USP1 903408 sc-eQTL 7.42e-01 -0.0304 0.0923 0.618 CD8_TCM L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 9.41e-01 -0.00723 0.0977 0.618 CD8_TCM L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.85e-01 -0.00189 0.101 0.614 CD8_TEM L2
ENSG00000088035 ALG6 -27870 sc-eQTL 8.85e-01 -0.0147 0.101 0.614 CD8_TEM L2
ENSG00000116641 DOCK7 651319 sc-eQTL 2.65e-01 0.109 0.0976 0.614 CD8_TEM L2
ENSG00000125703 ATG4C 555573 sc-eQTL 1.35e-01 -0.14 0.0936 0.614 CD8_TEM L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.44e-01 -0.149 0.101 0.614 CD8_TEM L2
ENSG00000162607 USP1 903408 sc-eQTL 5.69e-01 0.0555 0.0971 0.614 CD8_TEM L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 7.77e-01 -0.028 0.0988 0.614 CD8_TEM L2
ENSG00000079739 PGM1 -253706 sc-eQTL 7.99e-02 0.166 0.0942 0.615 MAIT L2
ENSG00000088035 ALG6 -27870 sc-eQTL 2.02e-01 -0.12 0.0936 0.615 MAIT L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.07e-02 0.168 0.0893 0.615 MAIT L2
ENSG00000125703 ATG4C 555573 sc-eQTL 6.50e-01 0.0432 0.0949 0.615 MAIT L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.84e-01 -0.126 0.0947 0.615 MAIT L2
ENSG00000162607 USP1 903408 sc-eQTL 8.34e-01 -0.0198 0.0944 0.615 MAIT L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 9.61e-02 0.163 0.0973 0.615 MAIT L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.35e-01 0.00777 0.0957 0.624 NK_CD56bright L2
ENSG00000088035 ALG6 -27870 sc-eQTL 9.07e-01 -0.0115 0.0981 0.624 NK_CD56bright L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.40e-01 0.0399 0.085 0.624 NK_CD56bright L2
ENSG00000125703 ATG4C 555573 sc-eQTL 5.19e-01 -0.0612 0.0949 0.624 NK_CD56bright L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.05e-01 -0.16 0.0982 0.624 NK_CD56bright L2
ENSG00000162607 USP1 903408 sc-eQTL 4.46e-01 -0.0777 0.102 0.624 NK_CD56bright L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 5.34e-01 -0.0607 0.0975 0.624 NK_CD56bright L2
ENSG00000079739 PGM1 -253706 sc-eQTL 5.09e-02 0.144 0.0735 0.621 NK_CD56dim L2
ENSG00000088035 ALG6 -27870 sc-eQTL 2.97e-01 0.0981 0.0939 0.621 NK_CD56dim L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.54e-01 0.0368 0.0819 0.621 NK_CD56dim L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.82e-01 0.023 0.0832 0.621 NK_CD56dim L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.68e-01 -0.13 0.0943 0.621 NK_CD56dim L2
ENSG00000162607 USP1 903408 sc-eQTL 9.12e-01 -0.0102 0.0918 0.621 NK_CD56dim L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 3.41e-01 -0.0975 0.102 0.621 NK_CD56dim L2
ENSG00000079739 PGM1 -253706 sc-eQTL 2.38e-01 -0.12 0.102 0.628 NK_HLA L2
ENSG00000088035 ALG6 -27870 sc-eQTL 5.47e-01 0.0638 0.106 0.628 NK_HLA L2
ENSG00000116641 DOCK7 651319 sc-eQTL 3.30e-01 0.0789 0.0807 0.628 NK_HLA L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.90e-01 -0.0251 0.0941 0.628 NK_HLA L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 9.60e-02 -0.164 0.0981 0.628 NK_HLA L2
ENSG00000162607 USP1 903408 sc-eQTL 4.18e-01 0.0838 0.103 0.628 NK_HLA L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 9.21e-01 -0.00931 0.0941 0.628 NK_HLA L2
ENSG00000079739 PGM1 -253706 sc-eQTL 5.25e-01 0.0518 0.0813 0.621 NK_cytokine L2
ENSG00000088035 ALG6 -27870 sc-eQTL 1.41e-01 0.135 0.0915 0.621 NK_cytokine L2
ENSG00000116641 DOCK7 651319 sc-eQTL 3.54e-01 0.079 0.0851 0.621 NK_cytokine L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.05e-01 0.033 0.0872 0.621 NK_cytokine L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.81e-02 -0.187 0.0894 0.621 NK_cytokine L2
ENSG00000162607 USP1 903408 sc-eQTL 9.91e-02 -0.156 0.0943 0.621 NK_cytokine L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 8.99e-01 0.0122 0.0962 0.621 NK_cytokine L2
ENSG00000079739 PGM1 -253706 sc-eQTL 3.68e-01 -0.104 0.115 0.637 PB L2
ENSG00000088035 ALG6 -27870 sc-eQTL 4.91e-02 0.238 0.12 0.637 PB L2
ENSG00000116641 DOCK7 651319 sc-eQTL 2.10e-01 0.163 0.129 0.637 PB L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.60e-01 0.0347 0.113 0.637 PB L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 5.08e-01 -0.075 0.113 0.637 PB L2
ENSG00000162607 USP1 903408 sc-eQTL 4.38e-02 0.226 0.111 0.637 PB L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 8.82e-01 -0.0185 0.124 0.637 PB L2
ENSG00000079739 PGM1 -253706 sc-eQTL 5.90e-01 -0.0478 0.0887 0.62 Pro_T L2
ENSG00000088035 ALG6 -27870 sc-eQTL 1.72e-02 0.214 0.0891 0.62 Pro_T L2
ENSG00000116641 DOCK7 651319 sc-eQTL 6.85e-01 -0.0369 0.0906 0.62 Pro_T L2
ENSG00000125703 ATG4C 555573 sc-eQTL 2.50e-01 -0.0913 0.0791 0.62 Pro_T L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.14e-02 0.2 0.0784 0.62 Pro_T L2
ENSG00000162607 USP1 903408 sc-eQTL 8.57e-01 -0.00991 0.0547 0.62 Pro_T L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 1.59e-01 0.13 0.092 0.62 Pro_T L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.83e-01 -0.002 0.0929 0.618 Treg L2
ENSG00000088035 ALG6 -27870 sc-eQTL 3.36e-01 0.0956 0.0992 0.618 Treg L2
ENSG00000116641 DOCK7 651319 sc-eQTL 9.01e-01 0.0113 0.0912 0.618 Treg L2
ENSG00000125703 ATG4C 555573 sc-eQTL 2.13e-01 0.116 0.0929 0.618 Treg L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.02e-02 -0.249 0.096 0.618 Treg L2
ENSG00000162607 USP1 903408 sc-eQTL 7.60e-01 -0.0288 0.0943 0.618 Treg L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 3.07e-02 -0.201 0.0923 0.618 Treg L2
ENSG00000079739 PGM1 -253706 sc-eQTL 1.33e-01 -0.141 0.0934 0.622 cDC L2
ENSG00000088035 ALG6 -27870 sc-eQTL 9.64e-01 -0.00427 0.0953 0.622 cDC L2
ENSG00000116641 DOCK7 651319 sc-eQTL 9.16e-01 0.00991 0.0936 0.622 cDC L2
ENSG00000125703 ATG4C 555573 sc-eQTL 9.65e-01 0.00355 0.0813 0.622 cDC L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 2.79e-01 -0.111 0.103 0.622 cDC L2
ENSG00000162607 USP1 903408 sc-eQTL 5.97e-01 -0.0486 0.0916 0.622 cDC L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 7.57e-02 -0.147 0.082 0.622 cDC L2
ENSG00000079739 PGM1 -253706 sc-eQTL 1.11e-01 -0.139 0.0868 0.618 cMono_IL1B L2
ENSG00000088035 ALG6 -27870 sc-eQTL 7.48e-01 0.0282 0.0874 0.618 cMono_IL1B L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.48e-01 0.0297 0.0922 0.618 cMono_IL1B L2
ENSG00000125703 ATG4C 555573 sc-eQTL 3.90e-01 0.0557 0.0647 0.618 cMono_IL1B L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 2.05e-02 -0.212 0.0907 0.618 cMono_IL1B L2
ENSG00000162607 USP1 903408 sc-eQTL 9.36e-01 -0.00648 0.081 0.618 cMono_IL1B L2
ENSG00000079739 PGM1 -253706 sc-eQTL 9.13e-01 0.0106 0.0973 0.618 cMono_S100A L2
ENSG00000088035 ALG6 -27870 sc-eQTL 1.54e-01 0.14 0.0982 0.618 cMono_S100A L2
ENSG00000116641 DOCK7 651319 sc-eQTL 5.73e-01 0.0516 0.0914 0.618 cMono_S100A L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.89e-01 0.0212 0.0792 0.618 cMono_S100A L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 2.40e-03 -0.269 0.0874 0.618 cMono_S100A L2
ENSG00000162607 USP1 903408 sc-eQTL 7.97e-01 -0.0237 0.0919 0.618 cMono_S100A L2
ENSG00000079739 PGM1 -253706 sc-eQTL 6.68e-01 0.0452 0.105 0.603 gdT L2
ENSG00000088035 ALG6 -27870 sc-eQTL 2.98e-01 -0.116 0.111 0.603 gdT L2
ENSG00000116641 DOCK7 651319 sc-eQTL 9.76e-02 0.181 0.109 0.603 gdT L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.16e-01 -0.0382 0.105 0.603 gdT L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 9.79e-01 -0.00292 0.111 0.603 gdT L2
ENSG00000162607 USP1 903408 sc-eQTL 2.53e-02 -0.234 0.104 0.603 gdT L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 7.08e-01 0.0411 0.11 0.603 gdT L2
ENSG00000079739 PGM1 -253706 sc-eQTL 4.81e-01 -0.0691 0.0978 0.622 intMono L2
ENSG00000088035 ALG6 -27870 sc-eQTL 7.94e-01 -0.0239 0.0912 0.622 intMono L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.63e-01 -0.0281 0.0931 0.622 intMono L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.62e-01 0.027 0.0889 0.622 intMono L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 5.39e-03 -0.27 0.0961 0.622 intMono L2
ENSG00000162607 USP1 903408 sc-eQTL 2.08e-01 -0.125 0.0992 0.622 intMono L2
ENSG00000079739 PGM1 -253706 sc-eQTL 3.71e-01 -0.0797 0.0889 0.62 ncMono L2
ENSG00000088035 ALG6 -27870 sc-eQTL 4.87e-03 0.273 0.0959 0.62 ncMono L2
ENSG00000116641 DOCK7 651319 sc-eQTL 2.75e-01 -0.105 0.096 0.62 ncMono L2
ENSG00000125703 ATG4C 555573 sc-eQTL 7.81e-01 -0.025 0.0899 0.62 ncMono L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.46e-01 -0.0887 0.0939 0.62 ncMono L2
ENSG00000162607 USP1 903408 sc-eQTL 5.46e-01 -0.0581 0.0961 0.62 ncMono L2
ENSG00000079739 PGM1 -253706 sc-eQTL 2.06e-01 0.137 0.108 0.61 pDC L2
ENSG00000088035 ALG6 -27870 sc-eQTL 2.81e-01 0.114 0.105 0.61 pDC L2
ENSG00000116641 DOCK7 651319 sc-eQTL 7.22e-01 0.0385 0.108 0.61 pDC L2
ENSG00000125703 ATG4C 555573 sc-eQTL 9.93e-01 0.000798 0.0968 0.61 pDC L2
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.73e-02 -0.257 0.107 0.61 pDC L2
ENSG00000162607 USP1 903408 sc-eQTL 8.04e-01 0.0275 0.111 0.61 pDC L2
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.96e-01 -0.101 0.0958 0.61 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -253706 sc-eQTL 6.96e-01 -0.0358 0.0913 0.618 B_Memory LOneK1K
ENSG00000088035 ALG6 -27870 sc-eQTL 7.58e-01 0.0311 0.101 0.618 B_Memory LOneK1K
ENSG00000116641 DOCK7 651319 sc-eQTL 6.20e-01 0.0435 0.0876 0.618 B_Memory LOneK1K
ENSG00000125703 ATG4C 555573 sc-eQTL 8.44e-01 -0.014 0.0709 0.618 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -254016 sc-eQTL 3.24e-04 -0.33 0.0903 0.618 B_Memory LOneK1K
ENSG00000162607 USP1 903408 sc-eQTL 9.41e-01 -0.00674 0.0904 0.618 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.78e-01 -0.105 0.0968 0.618 B_Memory LOneK1K
ENSG00000079739 PGM1 -253706 sc-eQTL 1.93e-01 -0.124 0.0947 0.618 B_Naive LOneK1K
ENSG00000088035 ALG6 -27870 sc-eQTL 5.69e-01 0.0558 0.0978 0.618 B_Naive LOneK1K
ENSG00000116641 DOCK7 651319 sc-eQTL 7.47e-01 0.0295 0.0914 0.618 B_Naive LOneK1K
ENSG00000125703 ATG4C 555573 sc-eQTL 8.20e-01 0.0159 0.0697 0.618 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.35e-05 -0.42 0.0943 0.618 B_Naive LOneK1K
ENSG00000162607 USP1 903408 sc-eQTL 3.86e-01 0.0735 0.0846 0.618 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -183667 sc-eQTL 2.67e-01 -0.11 0.0988 0.618 B_Naive LOneK1K
ENSG00000079739 PGM1 -253706 sc-eQTL 3.95e-01 -0.076 0.0892 0.618 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -27870 sc-eQTL 1.59e-01 0.122 0.0861 0.618 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 651319 sc-eQTL 6.47e-01 0.04 0.0871 0.618 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 555573 sc-eQTL 5.70e-01 0.0343 0.0602 0.618 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.26e-03 -0.284 0.087 0.618 CD14_Mono LOneK1K
ENSG00000162607 USP1 903408 sc-eQTL 6.55e-01 -0.0341 0.0761 0.618 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -253706 sc-eQTL 2.94e-01 -0.0898 0.0853 0.619 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -27870 sc-eQTL 9.55e-02 0.162 0.0965 0.619 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 651319 sc-eQTL 4.84e-01 -0.0673 0.096 0.619 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 555573 sc-eQTL 8.33e-01 0.0173 0.0819 0.619 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.37e-02 -0.233 0.0938 0.619 CD16_Mono LOneK1K
ENSG00000162607 USP1 903408 sc-eQTL 1.11e-01 -0.142 0.0888 0.619 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -253706 sc-eQTL 4.39e-01 0.0559 0.0722 0.621 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -27870 sc-eQTL 7.62e-02 0.154 0.0862 0.621 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 651319 sc-eQTL 5.43e-01 0.0473 0.0777 0.621 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 555573 sc-eQTL 8.71e-01 0.0126 0.0776 0.621 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -254016 sc-eQTL 1.91e-02 -0.214 0.0908 0.621 NK_CD56dim LOneK1K
ENSG00000162607 USP1 903408 sc-eQTL 4.98e-01 -0.0566 0.0834 0.621 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -183667 sc-eQTL 3.34e-01 -0.0983 0.101 0.621 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -253706 eQTL 0.0419 0.037 0.0182 0.00179 0.0 0.35
ENSG00000088035 ALG6 -27870 eQTL 0.00088 0.0448 0.0134 0.0 0.0 0.35
ENSG00000125703 ATG4C 555573 eQTL 0.0361 0.0359 0.0171 0.0 0.0 0.35
ENSG00000142856 ITGB3BP -254016 eQTL 5.12e-12 -0.204 0.0291 0.0 0.0 0.35

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -253706 1.34e-06 1.18e-06 2.43e-07 1.14e-06 3.86e-07 6.09e-07 1.5e-06 4.54e-07 1.66e-06 6.44e-07 2.01e-06 9.29e-07 2.45e-06 2.95e-07 4.58e-07 9.7e-07 9.8e-07 1.02e-06 6.79e-07 4.74e-07 7.54e-07 1.89e-06 1.12e-06 5.94e-07 2.23e-06 7.45e-07 1.06e-06 9.25e-07 1.59e-06 1.27e-06 7.79e-07 2.63e-07 2.96e-07 5.5e-07 5.67e-07 5.24e-07 6.77e-07 3.07e-07 5.08e-07 2.23e-07 3.04e-07 1.63e-06 2.91e-07 6.46e-08 3.17e-07 2.33e-07 2.6e-07 1.43e-07 2.76e-07
ENSG00000088035 ALG6 -27870 1.26e-05 1.3e-05 2.94e-06 8.5e-06 3.03e-06 6.44e-06 1.93e-05 2.9e-06 1.39e-05 6.68e-06 1.76e-05 6.86e-06 2.49e-05 5.19e-06 4.43e-06 8.95e-06 8.11e-06 1.23e-05 4.61e-06 4.29e-06 7.68e-06 1.31e-05 1.39e-05 5.74e-06 2.4e-05 5.37e-06 7.67e-06 6.04e-06 1.61e-05 1.74e-05 8.88e-06 1.33e-06 1.89e-06 5.42e-06 6.34e-06 4.43e-06 2.37e-06 2.71e-06 3.56e-06 2.66e-06 1.7e-06 1.71e-05 2.35e-06 3.99e-07 1.98e-06 2.56e-06 2.85e-06 1.36e-06 1.3e-06
ENSG00000125703 ATG4C 555573 5.59e-07 2.56e-07 8.99e-08 2.54e-07 1.05e-07 1.44e-07 3.44e-07 8.37e-08 2.6e-07 1.65e-07 2.98e-07 2.33e-07 4.11e-07 8.85e-08 1.18e-07 1.49e-07 1.18e-07 2.93e-07 1.27e-07 8.1e-08 1.6e-07 2.45e-07 2.26e-07 7.94e-08 3.41e-07 2.07e-07 1.83e-07 1.7e-07 1.98e-07 2.59e-07 1.76e-07 6.87e-08 4.93e-08 1.21e-07 1.39e-07 5.51e-08 6.57e-08 6.56e-08 5.25e-08 7.53e-08 2.78e-08 2.41e-07 1.21e-08 1.07e-08 8.45e-08 9.31e-09 9.68e-08 2.94e-09 5.61e-08
ENSG00000142856 ITGB3BP -254016 1.34e-06 1.18e-06 2.43e-07 1.14e-06 3.95e-07 6.09e-07 1.48e-06 4.54e-07 1.66e-06 6.28e-07 1.95e-06 9.11e-07 2.45e-06 2.59e-07 4.58e-07 9.7e-07 9.8e-07 1.02e-06 6.75e-07 4.74e-07 7.54e-07 1.91e-06 1.12e-06 5.94e-07 2.23e-06 7.45e-07 1.06e-06 9.43e-07 1.59e-06 1.23e-06 7.79e-07 2.62e-07 2.96e-07 5.62e-07 5.67e-07 5.35e-07 6.77e-07 3.18e-07 5.08e-07 2.37e-07 3.04e-07 1.63e-06 2.91e-07 6.46e-08 3.17e-07 2.32e-07 2.6e-07 1.42e-07 2.75e-07
ENSG00000162607 \N 903408 2.76e-07 1.3e-07 5.35e-08 1.81e-07 1.01e-07 9.48e-08 1.61e-07 5.43e-08 1.45e-07 6.08e-08 1.55e-07 1.05e-07 1.52e-07 7.13e-08 6.18e-08 7.5e-08 4.01e-08 1.4e-07 6.07e-08 4.78e-08 1.22e-07 1.24e-07 1.45e-07 2.64e-08 1.5e-07 1.25e-07 1.13e-07 9.74e-08 1.2e-07 1e-07 9.92e-08 2.9e-08 3.96e-08 8.23e-08 5.99e-08 3.28e-08 5.37e-08 8.72e-08 6.86e-08 3.92e-08 4.69e-08 1.36e-07 5.27e-08 1.86e-08 3.84e-08 1.89e-08 1.2e-07 1.89e-09 4.99e-08