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Genes within 1Mb (chr1:63319786:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -273625 sc-eQTL 5.97e-01 -0.0415 0.0784 0.415 B L1
ENSG00000088035 ALG6 -47789 sc-eQTL 6.21e-01 0.0402 0.0812 0.415 B L1
ENSG00000116641 DOCK7 631400 sc-eQTL 9.00e-01 -0.0103 0.0813 0.415 B L1
ENSG00000125703 ATG4C 535654 sc-eQTL 1.43e-01 0.0827 0.0562 0.415 B L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 7.53e-02 0.159 0.0892 0.415 B L1
ENSG00000162607 USP1 883489 sc-eQTL 2.41e-01 -0.0915 0.0778 0.415 B L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 4.20e-02 0.187 0.0912 0.415 B L1
ENSG00000079739 PGM1 -273625 sc-eQTL 8.61e-02 -0.115 0.0665 0.415 CD4T L1
ENSG00000088035 ALG6 -47789 sc-eQTL 8.52e-01 -0.0138 0.0739 0.415 CD4T L1
ENSG00000116641 DOCK7 631400 sc-eQTL 3.93e-01 0.0639 0.0747 0.415 CD4T L1
ENSG00000125703 ATG4C 535654 sc-eQTL 6.20e-02 0.112 0.0599 0.415 CD4T L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 4.13e-02 0.174 0.0849 0.415 CD4T L1
ENSG00000162607 USP1 883489 sc-eQTL 1.15e-01 0.0923 0.0583 0.415 CD4T L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.35e-01 0.0478 0.0769 0.415 CD4T L1
ENSG00000079739 PGM1 -273625 sc-eQTL 1.24e-02 -0.183 0.0727 0.415 CD8T L1
ENSG00000088035 ALG6 -47789 sc-eQTL 5.43e-01 0.0495 0.0813 0.415 CD8T L1
ENSG00000116641 DOCK7 631400 sc-eQTL 9.22e-01 0.00804 0.0824 0.415 CD8T L1
ENSG00000125703 ATG4C 535654 sc-eQTL 4.20e-01 -0.0631 0.0782 0.415 CD8T L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 8.59e-05 0.338 0.0844 0.415 CD8T L1
ENSG00000162607 USP1 883489 sc-eQTL 1.80e-01 0.0913 0.0679 0.415 CD8T L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 6.43e-01 0.0405 0.0872 0.415 CD8T L1
ENSG00000079739 PGM1 -273625 sc-eQTL 6.18e-01 0.0422 0.0845 0.408 DC L1
ENSG00000088035 ALG6 -47789 sc-eQTL 9.24e-01 0.00838 0.0873 0.408 DC L1
ENSG00000116641 DOCK7 631400 sc-eQTL 7.47e-01 0.0289 0.0894 0.408 DC L1
ENSG00000125703 ATG4C 535654 sc-eQTL 1.84e-01 0.093 0.0697 0.408 DC L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.25e-01 0.15 0.0973 0.408 DC L1
ENSG00000162607 USP1 883489 sc-eQTL 9.91e-01 0.000918 0.0854 0.408 DC L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 8.35e-02 0.147 0.0845 0.408 DC L1
ENSG00000079739 PGM1 -273625 sc-eQTL 7.84e-01 -0.022 0.0802 0.415 Mono L1
ENSG00000088035 ALG6 -47789 sc-eQTL 4.55e-01 -0.0626 0.0836 0.415 Mono L1
ENSG00000116641 DOCK7 631400 sc-eQTL 8.49e-01 0.0154 0.081 0.415 Mono L1
ENSG00000125703 ATG4C 535654 sc-eQTL 1.37e-01 -0.0812 0.0544 0.415 Mono L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 9.06e-03 0.224 0.0851 0.415 Mono L1
ENSG00000162607 USP1 883489 sc-eQTL 9.56e-01 -0.00388 0.071 0.415 Mono L1
ENSG00000079739 PGM1 -273625 sc-eQTL 5.50e-01 -0.0416 0.0695 0.412 NK L1
ENSG00000088035 ALG6 -47789 sc-eQTL 9.75e-01 -0.00252 0.0815 0.412 NK L1
ENSG00000116641 DOCK7 631400 sc-eQTL 7.97e-01 0.0173 0.0671 0.412 NK L1
ENSG00000125703 ATG4C 535654 sc-eQTL 9.26e-01 -0.00672 0.0721 0.412 NK L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 4.76e-05 0.358 0.0862 0.412 NK L1
ENSG00000162607 USP1 883489 sc-eQTL 6.74e-01 -0.0337 0.0801 0.412 NK L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 4.54e-01 0.073 0.0972 0.412 NK L1
ENSG00000079739 PGM1 -273625 sc-eQTL 6.15e-01 0.0394 0.0782 0.415 Other_T L1
ENSG00000088035 ALG6 -47789 sc-eQTL 6.21e-04 -0.266 0.0765 0.415 Other_T L1
ENSG00000116641 DOCK7 631400 sc-eQTL 4.89e-01 -0.0556 0.0802 0.415 Other_T L1
ENSG00000125703 ATG4C 535654 sc-eQTL 8.75e-01 -0.0109 0.0695 0.415 Other_T L1
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.87e-01 0.0812 0.0614 0.415 Other_T L1
ENSG00000162607 USP1 883489 sc-eQTL 1.05e-01 -0.0863 0.0531 0.415 Other_T L1
ENSG00000203965 EFCAB7 -203586 sc-eQTL 6.87e-01 -0.0384 0.0951 0.415 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -273625 sc-eQTL 7.21e-02 -0.187 0.104 0.411 B_Activated L2
ENSG00000088035 ALG6 -47789 sc-eQTL 9.29e-01 0.00895 0.1 0.411 B_Activated L2
ENSG00000116641 DOCK7 631400 sc-eQTL 3.86e-01 -0.0808 0.093 0.411 B_Activated L2
ENSG00000125703 ATG4C 535654 sc-eQTL 3.31e-01 -0.0953 0.0978 0.411 B_Activated L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 4.91e-01 0.0661 0.0957 0.411 B_Activated L2
ENSG00000162607 USP1 883489 sc-eQTL 4.01e-01 0.0873 0.104 0.411 B_Activated L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.17e-02 -0.153 0.09 0.411 B_Activated L2
ENSG00000079739 PGM1 -273625 sc-eQTL 9.04e-02 -0.158 0.0931 0.416 B_Intermediate L2
ENSG00000088035 ALG6 -47789 sc-eQTL 5.48e-01 -0.0572 0.0951 0.416 B_Intermediate L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.22e-01 0.0205 0.0909 0.416 B_Intermediate L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.23e-01 0.0273 0.0769 0.416 B_Intermediate L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.33e-01 0.138 0.0912 0.416 B_Intermediate L2
ENSG00000162607 USP1 883489 sc-eQTL 4.74e-01 -0.0656 0.0914 0.416 B_Intermediate L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.76e-02 0.172 0.09 0.416 B_Intermediate L2
ENSG00000079739 PGM1 -273625 sc-eQTL 5.67e-01 -0.0525 0.0914 0.416 B_Memory L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.37e-01 -0.0892 0.0928 0.416 B_Memory L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.82e-01 -0.0242 0.0872 0.416 B_Memory L2
ENSG00000125703 ATG4C 535654 sc-eQTL 3.77e-01 0.0733 0.0827 0.416 B_Memory L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 7.38e-01 -0.0318 0.0948 0.416 B_Memory L2
ENSG00000162607 USP1 883489 sc-eQTL 8.96e-01 -0.0126 0.0957 0.416 B_Memory L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.55e-01 0.0556 0.0941 0.416 B_Memory L2
ENSG00000079739 PGM1 -273625 sc-eQTL 8.76e-01 0.0143 0.092 0.415 B_Naive1 L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.82e-01 -0.0993 0.0921 0.415 B_Naive1 L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.61e-01 -0.0269 0.0885 0.415 B_Naive1 L2
ENSG00000125703 ATG4C 535654 sc-eQTL 6.84e-01 0.0277 0.0681 0.415 B_Naive1 L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.68e-01 0.125 0.09 0.415 B_Naive1 L2
ENSG00000162607 USP1 883489 sc-eQTL 3.73e-01 -0.0708 0.0794 0.415 B_Naive1 L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 2.67e-01 0.107 0.0962 0.415 B_Naive1 L2
ENSG00000079739 PGM1 -273625 sc-eQTL 8.78e-01 0.0141 0.0916 0.416 B_Naive2 L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.90e-01 0.101 0.0952 0.416 B_Naive2 L2
ENSG00000116641 DOCK7 631400 sc-eQTL 4.45e-01 0.0702 0.0917 0.416 B_Naive2 L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.78e-02 0.194 0.0873 0.416 B_Naive2 L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 5.51e-02 0.183 0.095 0.416 B_Naive2 L2
ENSG00000162607 USP1 883489 sc-eQTL 5.01e-01 -0.0614 0.0911 0.416 B_Naive2 L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 6.22e-02 0.177 0.0946 0.416 B_Naive2 L2
ENSG00000079739 PGM1 -273625 sc-eQTL 1.18e-01 0.149 0.095 0.416 CD4_CTL L2
ENSG00000088035 ALG6 -47789 sc-eQTL 8.85e-01 -0.0146 0.101 0.416 CD4_CTL L2
ENSG00000116641 DOCK7 631400 sc-eQTL 1.86e-01 0.117 0.088 0.416 CD4_CTL L2
ENSG00000125703 ATG4C 535654 sc-eQTL 6.55e-01 -0.0409 0.0914 0.416 CD4_CTL L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 5.65e-01 0.0563 0.0977 0.416 CD4_CTL L2
ENSG00000162607 USP1 883489 sc-eQTL 1.03e-02 0.237 0.0915 0.416 CD4_CTL L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.71e-01 -0.0527 0.0928 0.416 CD4_CTL L2
ENSG00000079739 PGM1 -273625 sc-eQTL 6.00e-02 -0.141 0.0747 0.415 CD4_Naive L2
ENSG00000088035 ALG6 -47789 sc-eQTL 4.83e-01 -0.0575 0.0817 0.415 CD4_Naive L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.39e-01 0.0268 0.0804 0.415 CD4_Naive L2
ENSG00000125703 ATG4C 535654 sc-eQTL 1.70e-01 0.0974 0.0708 0.415 CD4_Naive L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.22e-01 0.134 0.0864 0.415 CD4_Naive L2
ENSG00000162607 USP1 883489 sc-eQTL 2.47e-01 0.0769 0.0662 0.415 CD4_Naive L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.90e-01 0.00103 0.0863 0.415 CD4_Naive L2
ENSG00000079739 PGM1 -273625 sc-eQTL 7.13e-02 -0.14 0.0773 0.415 CD4_TCM L2
ENSG00000088035 ALG6 -47789 sc-eQTL 4.09e-01 0.0748 0.0903 0.415 CD4_TCM L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.50e-01 -0.0152 0.0802 0.415 CD4_TCM L2
ENSG00000125703 ATG4C 535654 sc-eQTL 9.74e-03 0.2 0.0768 0.415 CD4_TCM L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.49e-02 0.223 0.0907 0.415 CD4_TCM L2
ENSG00000162607 USP1 883489 sc-eQTL 8.31e-01 0.0161 0.0754 0.415 CD4_TCM L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 1.33e-01 0.134 0.0886 0.415 CD4_TCM L2
ENSG00000079739 PGM1 -273625 sc-eQTL 3.39e-01 -0.0886 0.0925 0.415 CD4_TEM L2
ENSG00000088035 ALG6 -47789 sc-eQTL 5.79e-01 -0.0518 0.0931 0.415 CD4_TEM L2
ENSG00000116641 DOCK7 631400 sc-eQTL 6.05e-01 -0.047 0.0907 0.415 CD4_TEM L2
ENSG00000125703 ATG4C 535654 sc-eQTL 5.86e-01 0.048 0.0881 0.415 CD4_TEM L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.66e-01 0.126 0.0906 0.415 CD4_TEM L2
ENSG00000162607 USP1 883489 sc-eQTL 1.76e-01 0.116 0.0859 0.415 CD4_TEM L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.26e-01 -0.0599 0.0942 0.415 CD4_TEM L2
ENSG00000079739 PGM1 -273625 sc-eQTL 1.51e-02 -0.204 0.0834 0.415 CD8_CTL L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.43e-01 0.0852 0.0898 0.415 CD8_CTL L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.04e-01 0.0324 0.0853 0.415 CD8_CTL L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.04e-01 -0.115 0.0905 0.415 CD8_CTL L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.07e-01 0.119 0.0941 0.415 CD8_CTL L2
ENSG00000162607 USP1 883489 sc-eQTL 5.83e-01 0.0465 0.0846 0.415 CD8_CTL L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 6.90e-01 0.0386 0.0967 0.415 CD8_CTL L2
ENSG00000079739 PGM1 -273625 sc-eQTL 5.64e-02 -0.163 0.0851 0.415 CD8_Naive L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.23e-01 0.0878 0.0886 0.415 CD8_Naive L2
ENSG00000116641 DOCK7 631400 sc-eQTL 2.85e-01 0.0982 0.0916 0.415 CD8_Naive L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.07e-01 0.0332 0.0881 0.415 CD8_Naive L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 8.76e-04 0.293 0.0869 0.415 CD8_Naive L2
ENSG00000162607 USP1 883489 sc-eQTL 1.13e-01 0.119 0.075 0.415 CD8_Naive L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 1.54e-01 0.12 0.0837 0.415 CD8_Naive L2
ENSG00000079739 PGM1 -273625 sc-eQTL 2.19e-01 0.115 0.093 0.412 CD8_TCM L2
ENSG00000088035 ALG6 -47789 sc-eQTL 9.50e-01 -0.00588 0.0945 0.412 CD8_TCM L2
ENSG00000116641 DOCK7 631400 sc-eQTL 4.84e-01 -0.0646 0.0921 0.412 CD8_TCM L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.95e-01 -0.0246 0.0943 0.412 CD8_TCM L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.14e-03 0.278 0.0895 0.412 CD8_TCM L2
ENSG00000162607 USP1 883489 sc-eQTL 8.36e-02 -0.152 0.0876 0.412 CD8_TCM L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.78e-01 0.00256 0.0935 0.412 CD8_TCM L2
ENSG00000079739 PGM1 -273625 sc-eQTL 5.23e-01 -0.0613 0.0956 0.425 CD8_TEM L2
ENSG00000088035 ALG6 -47789 sc-eQTL 5.98e-01 0.0507 0.096 0.425 CD8_TEM L2
ENSG00000116641 DOCK7 631400 sc-eQTL 5.10e-01 -0.0614 0.093 0.425 CD8_TEM L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.89e-01 -0.024 0.0895 0.425 CD8_TEM L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 6.81e-01 -0.0398 0.0969 0.425 CD8_TEM L2
ENSG00000162607 USP1 883489 sc-eQTL 5.90e-01 0.0498 0.0924 0.425 CD8_TEM L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 3.07e-01 -0.096 0.0937 0.425 CD8_TEM L2
ENSG00000079739 PGM1 -273625 sc-eQTL 3.17e-01 -0.0922 0.0919 0.413 MAIT L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.36e-02 -0.205 0.09 0.413 MAIT L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.74e-01 -0.0139 0.0873 0.413 MAIT L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.43e-01 -0.0302 0.0921 0.413 MAIT L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.07e-01 0.149 0.0917 0.413 MAIT L2
ENSG00000162607 USP1 883489 sc-eQTL 4.29e-01 -0.0724 0.0914 0.413 MAIT L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.00e-01 -0.0119 0.095 0.413 MAIT L2
ENSG00000079739 PGM1 -273625 sc-eQTL 2.44e-01 -0.106 0.0909 0.418 NK_CD56bright L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.96e-01 -0.0977 0.0933 0.418 NK_CD56bright L2
ENSG00000116641 DOCK7 631400 sc-eQTL 3.77e-01 0.0717 0.0809 0.418 NK_CD56bright L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.65e-01 -0.101 0.0903 0.418 NK_CD56bright L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.46e-01 0.137 0.0938 0.418 NK_CD56bright L2
ENSG00000162607 USP1 883489 sc-eQTL 2.36e-01 0.115 0.0969 0.418 NK_CD56bright L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 2.67e-01 0.103 0.0927 0.418 NK_CD56bright L2
ENSG00000079739 PGM1 -273625 sc-eQTL 3.55e-01 -0.0667 0.072 0.414 NK_CD56dim L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.81e-01 -0.0987 0.0913 0.414 NK_CD56dim L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.27e-01 0.0279 0.0796 0.414 NK_CD56dim L2
ENSG00000125703 ATG4C 535654 sc-eQTL 8.79e-01 0.0123 0.0809 0.414 NK_CD56dim L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 6.90e-05 0.36 0.0886 0.414 NK_CD56dim L2
ENSG00000162607 USP1 883489 sc-eQTL 1.73e-01 -0.122 0.0889 0.414 NK_CD56dim L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 3.86e-02 0.205 0.0985 0.414 NK_CD56dim L2
ENSG00000079739 PGM1 -273625 sc-eQTL 5.02e-01 -0.0657 0.0978 0.418 NK_HLA L2
ENSG00000088035 ALG6 -47789 sc-eQTL 9.98e-01 0.000279 0.102 0.418 NK_HLA L2
ENSG00000116641 DOCK7 631400 sc-eQTL 1.57e-01 -0.11 0.0773 0.418 NK_HLA L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.59e-01 -0.102 0.09 0.418 NK_HLA L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 9.12e-01 -0.0105 0.0948 0.418 NK_HLA L2
ENSG00000162607 USP1 883489 sc-eQTL 5.30e-01 -0.0623 0.0991 0.418 NK_HLA L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 1.02e-01 -0.147 0.0897 0.418 NK_HLA L2
ENSG00000079739 PGM1 -273625 sc-eQTL 9.73e-01 -0.00268 0.079 0.414 NK_cytokine L2
ENSG00000088035 ALG6 -47789 sc-eQTL 1.92e-01 0.116 0.089 0.414 NK_cytokine L2
ENSG00000116641 DOCK7 631400 sc-eQTL 9.60e-01 0.00415 0.0828 0.414 NK_cytokine L2
ENSG00000125703 ATG4C 535654 sc-eQTL 6.29e-01 0.041 0.0846 0.414 NK_cytokine L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 5.03e-02 0.171 0.0869 0.414 NK_cytokine L2
ENSG00000162607 USP1 883489 sc-eQTL 8.65e-01 0.0157 0.0922 0.414 NK_cytokine L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.69e-01 -0.0533 0.0933 0.414 NK_cytokine L2
ENSG00000079739 PGM1 -273625 sc-eQTL 2.47e-01 -0.13 0.112 0.411 PB L2
ENSG00000088035 ALG6 -47789 sc-eQTL 9.33e-01 0.00999 0.118 0.411 PB L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.04e-01 -0.0313 0.126 0.411 PB L2
ENSG00000125703 ATG4C 535654 sc-eQTL 9.13e-01 0.0121 0.11 0.411 PB L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.36e-02 0.247 0.107 0.411 PB L2
ENSG00000162607 USP1 883489 sc-eQTL 7.04e-01 -0.0417 0.109 0.411 PB L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.98e-01 0.00029 0.121 0.411 PB L2
ENSG00000079739 PGM1 -273625 sc-eQTL 6.33e-01 0.0409 0.0856 0.415 Pro_T L2
ENSG00000088035 ALG6 -47789 sc-eQTL 4.73e-01 -0.0625 0.087 0.415 Pro_T L2
ENSG00000116641 DOCK7 631400 sc-eQTL 1.74e-01 -0.119 0.087 0.415 Pro_T L2
ENSG00000125703 ATG4C 535654 sc-eQTL 4.97e-01 0.052 0.0764 0.415 Pro_T L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 8.34e-01 0.0161 0.0768 0.415 Pro_T L2
ENSG00000162607 USP1 883489 sc-eQTL 7.58e-01 0.0163 0.0528 0.415 Pro_T L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 9.48e-01 -0.00579 0.0892 0.415 Pro_T L2
ENSG00000079739 PGM1 -273625 sc-eQTL 6.10e-01 0.0447 0.0875 0.415 Treg L2
ENSG00000088035 ALG6 -47789 sc-eQTL 7.27e-01 0.0327 0.0936 0.415 Treg L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.04e-01 -0.0213 0.086 0.415 Treg L2
ENSG00000125703 ATG4C 535654 sc-eQTL 1.24e-01 -0.135 0.0874 0.415 Treg L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 7.07e-01 -0.0346 0.0919 0.415 Treg L2
ENSG00000162607 USP1 883489 sc-eQTL 3.23e-01 -0.0879 0.0887 0.415 Treg L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 8.43e-01 -0.0175 0.088 0.415 Treg L2
ENSG00000079739 PGM1 -273625 sc-eQTL 6.75e-01 0.0377 0.0898 0.407 cDC L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.32e-01 0.0884 0.0909 0.407 cDC L2
ENSG00000116641 DOCK7 631400 sc-eQTL 4.67e-01 -0.0651 0.0893 0.407 cDC L2
ENSG00000125703 ATG4C 535654 sc-eQTL 3.00e-01 0.0805 0.0774 0.407 cDC L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.05e-01 0.125 0.098 0.407 cDC L2
ENSG00000162607 USP1 883489 sc-eQTL 6.25e-01 0.0428 0.0875 0.407 cDC L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 4.84e-02 0.155 0.0782 0.407 cDC L2
ENSG00000079739 PGM1 -273625 sc-eQTL 1.58e-01 -0.117 0.0829 0.415 cMono_IL1B L2
ENSG00000088035 ALG6 -47789 sc-eQTL 2.26e-01 -0.101 0.0831 0.415 cMono_IL1B L2
ENSG00000116641 DOCK7 631400 sc-eQTL 8.93e-01 0.0118 0.0879 0.415 cMono_IL1B L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.18e-01 -0.0761 0.0616 0.415 cMono_IL1B L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.02e-03 0.268 0.0856 0.415 cMono_IL1B L2
ENSG00000162607 USP1 883489 sc-eQTL 2.42e-01 -0.0904 0.077 0.415 cMono_IL1B L2
ENSG00000079739 PGM1 -273625 sc-eQTL 4.11e-01 0.0759 0.0921 0.415 cMono_S100A L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.51e-01 0.0873 0.0933 0.415 cMono_S100A L2
ENSG00000116641 DOCK7 631400 sc-eQTL 4.62e-01 -0.0639 0.0866 0.415 cMono_S100A L2
ENSG00000125703 ATG4C 535654 sc-eQTL 7.15e-01 0.0274 0.075 0.415 cMono_S100A L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 3.10e-01 0.0859 0.0845 0.415 cMono_S100A L2
ENSG00000162607 USP1 883489 sc-eQTL 2.14e-01 0.108 0.0868 0.415 cMono_S100A L2
ENSG00000079739 PGM1 -273625 sc-eQTL 8.40e-01 0.0215 0.106 0.442 gdT L2
ENSG00000088035 ALG6 -47789 sc-eQTL 8.76e-01 -0.0178 0.113 0.442 gdT L2
ENSG00000116641 DOCK7 631400 sc-eQTL 4.75e-01 -0.0793 0.111 0.442 gdT L2
ENSG00000125703 ATG4C 535654 sc-eQTL 9.99e-01 0.000102 0.106 0.442 gdT L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.43e-01 -0.165 0.112 0.442 gdT L2
ENSG00000162607 USP1 883489 sc-eQTL 4.57e-01 -0.0794 0.106 0.442 gdT L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 7.05e-01 0.042 0.111 0.442 gdT L2
ENSG00000079739 PGM1 -273625 sc-eQTL 8.10e-01 0.023 0.0953 0.407 intMono L2
ENSG00000088035 ALG6 -47789 sc-eQTL 3.08e-01 -0.0906 0.0886 0.407 intMono L2
ENSG00000116641 DOCK7 631400 sc-eQTL 7.76e-01 0.0258 0.0907 0.407 intMono L2
ENSG00000125703 ATG4C 535654 sc-eQTL 2.12e-01 -0.108 0.0863 0.407 intMono L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 4.79e-02 0.188 0.0945 0.407 intMono L2
ENSG00000162607 USP1 883489 sc-eQTL 2.34e-01 0.115 0.0967 0.407 intMono L2
ENSG00000079739 PGM1 -273625 sc-eQTL 8.91e-01 -0.012 0.0873 0.403 ncMono L2
ENSG00000088035 ALG6 -47789 sc-eQTL 7.60e-01 -0.0293 0.0959 0.403 ncMono L2
ENSG00000116641 DOCK7 631400 sc-eQTL 3.76e-02 0.195 0.0934 0.403 ncMono L2
ENSG00000125703 ATG4C 535654 sc-eQTL 1.55e-01 -0.125 0.0878 0.403 ncMono L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 6.12e-01 -0.0468 0.0922 0.403 ncMono L2
ENSG00000162607 USP1 883489 sc-eQTL 4.19e-01 -0.0763 0.0941 0.403 ncMono L2
ENSG00000079739 PGM1 -273625 sc-eQTL 9.19e-01 0.0106 0.104 0.424 pDC L2
ENSG00000088035 ALG6 -47789 sc-eQTL 1.40e-01 -0.149 0.101 0.424 pDC L2
ENSG00000116641 DOCK7 631400 sc-eQTL 1.88e-01 0.136 0.103 0.424 pDC L2
ENSG00000125703 ATG4C 535654 sc-eQTL 5.88e-01 0.0503 0.0927 0.424 pDC L2
ENSG00000142856 ITGB3BP -273935 sc-eQTL 2.61e-01 0.117 0.104 0.424 pDC L2
ENSG00000162607 USP1 883489 sc-eQTL 4.30e-01 0.0839 0.106 0.424 pDC L2
ENSG00000203965 EFCAB7 -203586 sc-eQTL 2.88e-01 0.0981 0.0919 0.424 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -273625 sc-eQTL 5.20e-02 -0.168 0.0862 0.415 B_Memory LOneK1K
ENSG00000088035 ALG6 -47789 sc-eQTL 4.78e-01 -0.0682 0.096 0.415 B_Memory LOneK1K
ENSG00000116641 DOCK7 631400 sc-eQTL 5.16e-01 -0.0542 0.0833 0.415 B_Memory LOneK1K
ENSG00000125703 ATG4C 535654 sc-eQTL 5.91e-01 0.0363 0.0674 0.415 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -273935 sc-eQTL 3.93e-01 0.0757 0.0885 0.415 B_Memory LOneK1K
ENSG00000162607 USP1 883489 sc-eQTL 5.20e-01 -0.0554 0.0859 0.415 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -203586 sc-eQTL 1.51e-01 0.132 0.0919 0.415 B_Memory LOneK1K
ENSG00000079739 PGM1 -273625 sc-eQTL 6.98e-01 0.035 0.0901 0.415 B_Naive LOneK1K
ENSG00000088035 ALG6 -47789 sc-eQTL 8.60e-01 -0.0164 0.0928 0.415 B_Naive LOneK1K
ENSG00000116641 DOCK7 631400 sc-eQTL 6.20e-01 0.043 0.0866 0.415 B_Naive LOneK1K
ENSG00000125703 ATG4C 535654 sc-eQTL 2.13e-01 0.0822 0.0659 0.415 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.06e-01 0.151 0.0929 0.415 B_Naive LOneK1K
ENSG00000162607 USP1 883489 sc-eQTL 2.02e-01 -0.102 0.08 0.415 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -203586 sc-eQTL 8.87e-02 0.16 0.0933 0.415 B_Naive LOneK1K
ENSG00000079739 PGM1 -273625 sc-eQTL 8.81e-01 -0.0128 0.0855 0.415 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -47789 sc-eQTL 5.85e-01 -0.0453 0.0828 0.415 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 631400 sc-eQTL 5.55e-01 -0.0492 0.0833 0.415 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 535654 sc-eQTL 4.29e-01 -0.0456 0.0576 0.415 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -273935 sc-eQTL 1.32e-02 0.21 0.0841 0.415 CD14_Mono LOneK1K
ENSG00000162607 USP1 883489 sc-eQTL 9.38e-01 0.00572 0.0729 0.415 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -273625 sc-eQTL 9.85e-01 -0.00157 0.0843 0.414 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -47789 sc-eQTL 5.98e-01 -0.0505 0.0956 0.414 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 631400 sc-eQTL 4.85e-02 0.186 0.0938 0.414 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 535654 sc-eQTL 1.89e-01 -0.106 0.0804 0.414 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -273935 sc-eQTL 4.16e-01 0.0763 0.0936 0.414 CD16_Mono LOneK1K
ENSG00000162607 USP1 883489 sc-eQTL 5.00e-01 -0.0594 0.088 0.414 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -273625 sc-eQTL 8.64e-01 -0.0122 0.0713 0.414 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -47789 sc-eQTL 9.45e-01 -0.00589 0.0856 0.414 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 631400 sc-eQTL 7.01e-01 -0.0295 0.0766 0.414 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 535654 sc-eQTL 9.35e-01 -0.00624 0.0765 0.414 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -273935 sc-eQTL 3.30e-04 0.321 0.0879 0.414 NK_CD56dim LOneK1K
ENSG00000162607 USP1 883489 sc-eQTL 1.78e-01 -0.111 0.082 0.414 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -203586 sc-eQTL 5.19e-01 0.0646 0.1 0.414 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -273625 eQTL 0.00398 -0.0513 0.0178 0.0 0.0 0.445
ENSG00000088035 ALG6 -47789 eQTL 0.0273 -0.0292 0.0132 0.0 0.0 0.445
ENSG00000142856 ITGB3BP -273935 eQTL 0.0115 0.0738 0.0292 0.0 0.0 0.445

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -273625 4.17e-06 4.68e-06 1.28e-06 3.45e-06 1.5e-06 1.61e-06 4.17e-06 8.27e-07 5.1e-06 2.84e-06 4.29e-06 3.54e-06 7.51e-06 2.07e-06 1.04e-06 3.81e-06 3.02e-06 3.49e-06 1.57e-06 2.57e-06 2.79e-06 4.27e-06 4.24e-06 1.44e-06 5.89e-06 2.01e-06 2.32e-06 2.7e-06 4.26e-06 4.04e-06 2.81e-06 1.25e-06 6.44e-07 2.34e-06 1.98e-06 1.17e-06 1.35e-06 6.96e-07 8.97e-07 9.82e-07 9.98e-07 4.34e-06 5.26e-07 1.81e-07 7.7e-07 1.06e-06 1.02e-06 6.58e-07 4.98e-07