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Genes within 1Mb (chr1:63314456:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -278955 sc-eQTL 8.17e-01 0.0179 0.0774 0.579 B L1
ENSG00000088035 ALG6 -53119 sc-eQTL 1.99e-01 -0.103 0.0799 0.579 B L1
ENSG00000116641 DOCK7 626070 sc-eQTL 8.53e-01 0.0149 0.0802 0.579 B L1
ENSG00000125703 ATG4C 530324 sc-eQTL 8.57e-01 -0.0101 0.0558 0.579 B L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 4.16e-02 0.18 0.0879 0.579 B L1
ENSG00000162607 USP1 878159 sc-eQTL 4.45e-01 -0.0589 0.0769 0.579 B L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.14e-02 0.17 0.0902 0.579 B L1
ENSG00000079739 PGM1 -278955 sc-eQTL 3.81e-01 -0.0581 0.0662 0.579 CD4T L1
ENSG00000088035 ALG6 -53119 sc-eQTL 5.66e-01 -0.0421 0.0732 0.579 CD4T L1
ENSG00000116641 DOCK7 626070 sc-eQTL 4.09e-02 0.151 0.0734 0.579 CD4T L1
ENSG00000125703 ATG4C 530324 sc-eQTL 4.09e-01 0.0494 0.0598 0.579 CD4T L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.30e-02 0.21 0.0837 0.579 CD4T L1
ENSG00000162607 USP1 878159 sc-eQTL 2.13e-01 0.0723 0.0579 0.579 CD4T L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 8.48e-01 0.0147 0.0763 0.579 CD4T L1
ENSG00000079739 PGM1 -278955 sc-eQTL 9.38e-01 -0.00566 0.0725 0.579 CD8T L1
ENSG00000088035 ALG6 -53119 sc-eQTL 5.96e-01 -0.0424 0.0799 0.579 CD8T L1
ENSG00000116641 DOCK7 626070 sc-eQTL 1.60e-01 0.114 0.0806 0.579 CD8T L1
ENSG00000125703 ATG4C 530324 sc-eQTL 1.02e-01 -0.126 0.0764 0.579 CD8T L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.98e-04 0.315 0.0832 0.579 CD8T L1
ENSG00000162607 USP1 878159 sc-eQTL 7.54e-02 0.119 0.0665 0.579 CD8T L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.59e-01 0.0378 0.0857 0.579 CD8T L1
ENSG00000079739 PGM1 -278955 sc-eQTL 4.77e-01 0.0563 0.0791 0.572 DC L1
ENSG00000088035 ALG6 -53119 sc-eQTL 4.00e-01 -0.0688 0.0816 0.572 DC L1
ENSG00000116641 DOCK7 626070 sc-eQTL 1.09e-02 0.212 0.0824 0.572 DC L1
ENSG00000125703 ATG4C 530324 sc-eQTL 8.32e-02 0.113 0.0651 0.572 DC L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.52e-01 0.131 0.0912 0.572 DC L1
ENSG00000162607 USP1 878159 sc-eQTL 8.28e-01 -0.0174 0.08 0.572 DC L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 4.75e-01 0.057 0.0797 0.572 DC L1
ENSG00000079739 PGM1 -278955 sc-eQTL 5.41e-01 0.0485 0.0791 0.579 Mono L1
ENSG00000088035 ALG6 -53119 sc-eQTL 2.34e-01 -0.0982 0.0823 0.579 Mono L1
ENSG00000116641 DOCK7 626070 sc-eQTL 2.85e-01 0.0853 0.0797 0.579 Mono L1
ENSG00000125703 ATG4C 530324 sc-eQTL 6.84e-01 -0.022 0.054 0.579 Mono L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.50e-03 0.268 0.0833 0.579 Mono L1
ENSG00000162607 USP1 878159 sc-eQTL 5.77e-01 0.0391 0.07 0.579 Mono L1
ENSG00000079739 PGM1 -278955 sc-eQTL 7.58e-02 0.12 0.0673 0.577 NK L1
ENSG00000088035 ALG6 -53119 sc-eQTL 5.66e-01 -0.0456 0.0795 0.577 NK L1
ENSG00000116641 DOCK7 626070 sc-eQTL 5.49e-01 0.0393 0.0654 0.577 NK L1
ENSG00000125703 ATG4C 530324 sc-eQTL 6.19e-01 -0.035 0.0703 0.577 NK L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 3.03e-03 0.257 0.0856 0.577 NK L1
ENSG00000162607 USP1 878159 sc-eQTL 7.47e-01 -0.0252 0.0781 0.577 NK L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.56e-01 0.0424 0.0949 0.577 NK L1
ENSG00000079739 PGM1 -278955 sc-eQTL 5.58e-01 -0.045 0.0768 0.579 Other_T L1
ENSG00000088035 ALG6 -53119 sc-eQTL 6.00e-04 -0.262 0.0751 0.579 Other_T L1
ENSG00000116641 DOCK7 626070 sc-eQTL 7.48e-01 -0.0254 0.0788 0.579 Other_T L1
ENSG00000125703 ATG4C 530324 sc-eQTL 4.44e-01 0.0522 0.0682 0.579 Other_T L1
ENSG00000142856 ITGB3BP -279265 sc-eQTL 7.43e-01 -0.0199 0.0605 0.579 Other_T L1
ENSG00000162607 USP1 878159 sc-eQTL 3.61e-01 -0.048 0.0524 0.579 Other_T L1
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.20e-01 -0.0464 0.0933 0.579 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -278955 sc-eQTL 9.23e-01 0.00964 0.0999 0.579 B_Activated L2
ENSG00000088035 ALG6 -53119 sc-eQTL 6.22e-01 0.0472 0.0956 0.579 B_Activated L2
ENSG00000116641 DOCK7 626070 sc-eQTL 6.80e-01 -0.0368 0.0891 0.579 B_Activated L2
ENSG00000125703 ATG4C 530324 sc-eQTL 4.59e-01 -0.0694 0.0936 0.579 B_Activated L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.04e-02 0.211 0.0901 0.579 B_Activated L2
ENSG00000162607 USP1 878159 sc-eQTL 7.85e-02 0.174 0.0984 0.579 B_Activated L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 2.74e-01 0.0949 0.0864 0.579 B_Activated L2
ENSG00000079739 PGM1 -278955 sc-eQTL 4.54e-01 -0.07 0.0933 0.582 B_Intermediate L2
ENSG00000088035 ALG6 -53119 sc-eQTL 8.17e-01 0.022 0.0949 0.582 B_Intermediate L2
ENSG00000116641 DOCK7 626070 sc-eQTL 2.61e-01 -0.102 0.0903 0.582 B_Intermediate L2
ENSG00000125703 ATG4C 530324 sc-eQTL 7.10e-01 0.0285 0.0767 0.582 B_Intermediate L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.50e-02 0.221 0.0901 0.582 B_Intermediate L2
ENSG00000162607 USP1 878159 sc-eQTL 9.13e-01 0.00999 0.0912 0.582 B_Intermediate L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.41e-01 0.0422 0.0905 0.582 B_Intermediate L2
ENSG00000079739 PGM1 -278955 sc-eQTL 2.35e-01 0.109 0.0917 0.582 B_Memory L2
ENSG00000088035 ALG6 -53119 sc-eQTL 5.10e-02 -0.182 0.0927 0.582 B_Memory L2
ENSG00000116641 DOCK7 626070 sc-eQTL 6.75e-01 0.0368 0.0877 0.582 B_Memory L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.27e-01 0.101 0.0831 0.582 B_Memory L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 3.34e-01 0.0921 0.0952 0.582 B_Memory L2
ENSG00000162607 USP1 878159 sc-eQTL 4.18e-01 -0.078 0.0961 0.582 B_Memory L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 4.52e-02 0.189 0.0938 0.582 B_Memory L2
ENSG00000079739 PGM1 -278955 sc-eQTL 2.35e-01 -0.11 0.0921 0.579 B_Naive1 L2
ENSG00000088035 ALG6 -53119 sc-eQTL 1.89e-01 -0.122 0.0924 0.579 B_Naive1 L2
ENSG00000116641 DOCK7 626070 sc-eQTL 7.81e-01 0.0247 0.0889 0.579 B_Naive1 L2
ENSG00000125703 ATG4C 530324 sc-eQTL 7.97e-01 0.0176 0.0684 0.579 B_Naive1 L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 8.40e-02 0.157 0.0902 0.579 B_Naive1 L2
ENSG00000162607 USP1 878159 sc-eQTL 3.00e-01 -0.0828 0.0797 0.579 B_Naive1 L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 1.10e-01 0.155 0.0963 0.579 B_Naive1 L2
ENSG00000079739 PGM1 -278955 sc-eQTL 6.71e-01 0.0385 0.0903 0.582 B_Naive2 L2
ENSG00000088035 ALG6 -53119 sc-eQTL 7.69e-01 -0.0277 0.0942 0.582 B_Naive2 L2
ENSG00000116641 DOCK7 626070 sc-eQTL 2.12e-01 0.113 0.0902 0.582 B_Naive2 L2
ENSG00000125703 ATG4C 530324 sc-eQTL 4.55e-01 0.0651 0.0871 0.582 B_Naive2 L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 3.35e-01 0.0912 0.0943 0.582 B_Naive2 L2
ENSG00000162607 USP1 878159 sc-eQTL 7.39e-01 0.03 0.09 0.582 B_Naive2 L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 7.20e-01 -0.0337 0.094 0.582 B_Naive2 L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.93e-02 0.147 0.0887 0.58 CD4_CTL L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.67e-01 0.0853 0.0943 0.58 CD4_CTL L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.73e-01 0.0133 0.0826 0.58 CD4_CTL L2
ENSG00000125703 ATG4C 530324 sc-eQTL 3.97e-01 0.0725 0.0853 0.58 CD4_CTL L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 8.94e-01 0.0122 0.0914 0.58 CD4_CTL L2
ENSG00000162607 USP1 878159 sc-eQTL 3.24e-02 0.185 0.086 0.58 CD4_CTL L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 8.30e-01 -0.0186 0.0868 0.58 CD4_CTL L2
ENSG00000079739 PGM1 -278955 sc-eQTL 8.11e-02 -0.131 0.0748 0.579 CD4_Naive L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.62e-01 -0.0603 0.0817 0.579 CD4_Naive L2
ENSG00000116641 DOCK7 626070 sc-eQTL 1.36e-01 0.12 0.08 0.579 CD4_Naive L2
ENSG00000125703 ATG4C 530324 sc-eQTL 4.52e-01 0.0534 0.071 0.579 CD4_Naive L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 7.78e-02 0.153 0.0862 0.579 CD4_Naive L2
ENSG00000162607 USP1 878159 sc-eQTL 1.25e-01 0.102 0.066 0.579 CD4_Naive L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 4.89e-01 0.0596 0.0861 0.579 CD4_Naive L2
ENSG00000079739 PGM1 -278955 sc-eQTL 6.72e-01 -0.0329 0.0776 0.579 CD4_TCM L2
ENSG00000088035 ALG6 -53119 sc-eQTL 1.81e-01 0.12 0.0897 0.579 CD4_TCM L2
ENSG00000116641 DOCK7 626070 sc-eQTL 2.26e-01 0.0967 0.0796 0.579 CD4_TCM L2
ENSG00000125703 ATG4C 530324 sc-eQTL 3.03e-01 0.0801 0.0776 0.579 CD4_TCM L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 8.88e-03 0.238 0.0902 0.579 CD4_TCM L2
ENSG00000162607 USP1 878159 sc-eQTL 9.52e-01 -0.00451 0.0752 0.579 CD4_TCM L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 3.15e-01 0.0892 0.0885 0.579 CD4_TCM L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.17e-01 -0.0095 0.091 0.579 CD4_TEM L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.71e-01 -0.0819 0.0913 0.579 CD4_TEM L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.69e-01 -0.0147 0.0892 0.579 CD4_TEM L2
ENSG00000125703 ATG4C 530324 sc-eQTL 3.11e-01 0.0878 0.0864 0.579 CD4_TEM L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.50e-01 0.103 0.0891 0.579 CD4_TEM L2
ENSG00000162607 USP1 878159 sc-eQTL 1.10e-01 0.135 0.0842 0.579 CD4_TEM L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 1.43e-01 -0.136 0.0922 0.579 CD4_TEM L2
ENSG00000079739 PGM1 -278955 sc-eQTL 7.75e-01 0.0235 0.0822 0.579 CD8_CTL L2
ENSG00000088035 ALG6 -53119 sc-eQTL 6.71e-01 -0.0372 0.0874 0.579 CD8_CTL L2
ENSG00000116641 DOCK7 626070 sc-eQTL 3.27e-02 0.176 0.0821 0.579 CD8_CTL L2
ENSG00000125703 ATG4C 530324 sc-eQTL 1.58e-01 -0.125 0.0879 0.579 CD8_CTL L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.35e-01 0.109 0.0916 0.579 CD8_CTL L2
ENSG00000162607 USP1 878159 sc-eQTL 6.73e-01 0.0348 0.0822 0.579 CD8_CTL L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 7.78e-01 0.0265 0.0941 0.579 CD8_CTL L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.50e-01 -0.00522 0.0834 0.579 CD8_Naive L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.35e-01 -0.0833 0.0861 0.579 CD8_Naive L2
ENSG00000116641 DOCK7 626070 sc-eQTL 3.32e-01 0.0865 0.089 0.579 CD8_Naive L2
ENSG00000125703 ATG4C 530324 sc-eQTL 7.49e-01 -0.0274 0.0856 0.579 CD8_Naive L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.01e-04 0.332 0.0837 0.579 CD8_Naive L2
ENSG00000162607 USP1 878159 sc-eQTL 1.29e-01 0.111 0.0729 0.579 CD8_Naive L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 1.83e-01 0.109 0.0814 0.579 CD8_Naive L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.30e-01 -0.00801 0.091 0.583 CD8_TCM L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.08e-02 0.198 0.0911 0.583 CD8_TCM L2
ENSG00000116641 DOCK7 626070 sc-eQTL 1.50e-01 -0.129 0.0895 0.583 CD8_TCM L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.53e-01 -0.105 0.0917 0.583 CD8_TCM L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.41e-02 0.218 0.088 0.583 CD8_TCM L2
ENSG00000162607 USP1 878159 sc-eQTL 4.29e-01 0.0681 0.0859 0.583 CD8_TCM L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 8.48e-01 0.0175 0.0911 0.583 CD8_TCM L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.49e-01 0.00588 0.0923 0.584 CD8_TEM L2
ENSG00000088035 ALG6 -53119 sc-eQTL 9.15e-01 -0.00989 0.0927 0.584 CD8_TEM L2
ENSG00000116641 DOCK7 626070 sc-eQTL 4.71e-01 0.0648 0.0897 0.584 CD8_TEM L2
ENSG00000125703 ATG4C 530324 sc-eQTL 9.34e-01 0.00711 0.0864 0.584 CD8_TEM L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 6.79e-01 0.0387 0.0934 0.584 CD8_TEM L2
ENSG00000162607 USP1 878159 sc-eQTL 8.86e-01 0.0128 0.0892 0.584 CD8_TEM L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 3.22e-01 -0.0897 0.0904 0.584 CD8_TEM L2
ENSG00000079739 PGM1 -278955 sc-eQTL 6.28e-01 -0.0426 0.0879 0.578 MAIT L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.75e-01 -0.0772 0.0869 0.578 MAIT L2
ENSG00000116641 DOCK7 626070 sc-eQTL 7.88e-01 -0.0224 0.0834 0.578 MAIT L2
ENSG00000125703 ATG4C 530324 sc-eQTL 6.40e-01 0.0411 0.0879 0.578 MAIT L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 7.47e-01 -0.0285 0.0881 0.578 MAIT L2
ENSG00000162607 USP1 878159 sc-eQTL 8.59e-02 -0.15 0.0868 0.578 MAIT L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 3.72e-01 -0.081 0.0905 0.578 MAIT L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.20e-01 0.00903 0.0902 0.576 NK_CD56bright L2
ENSG00000088035 ALG6 -53119 sc-eQTL 5.33e-01 -0.0577 0.0924 0.576 NK_CD56bright L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.69e-01 -0.0133 0.0801 0.576 NK_CD56bright L2
ENSG00000125703 ATG4C 530324 sc-eQTL 5.47e-01 -0.054 0.0895 0.576 NK_CD56bright L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.29e-01 0.112 0.0929 0.576 NK_CD56bright L2
ENSG00000162607 USP1 878159 sc-eQTL 9.22e-02 0.162 0.0955 0.576 NK_CD56bright L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 9.25e-01 0.00862 0.092 0.576 NK_CD56bright L2
ENSG00000079739 PGM1 -278955 sc-eQTL 2.93e-01 0.0736 0.0698 0.575 NK_CD56dim L2
ENSG00000088035 ALG6 -53119 sc-eQTL 8.09e-01 -0.0215 0.0887 0.575 NK_CD56dim L2
ENSG00000116641 DOCK7 626070 sc-eQTL 4.38e-01 0.0599 0.0771 0.575 NK_CD56dim L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.25e-01 -0.0951 0.0782 0.575 NK_CD56dim L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.71e-02 0.212 0.0881 0.575 NK_CD56dim L2
ENSG00000162607 USP1 878159 sc-eQTL 9.64e-01 -0.00395 0.0866 0.575 NK_CD56dim L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 1.79e-01 0.13 0.096 0.575 NK_CD56dim L2
ENSG00000079739 PGM1 -278955 sc-eQTL 2.88e-01 -0.0992 0.0931 0.58 NK_HLA L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.17e-01 -0.0969 0.0966 0.58 NK_HLA L2
ENSG00000116641 DOCK7 626070 sc-eQTL 7.61e-01 -0.0226 0.074 0.58 NK_HLA L2
ENSG00000125703 ATG4C 530324 sc-eQTL 3.64e-01 -0.0781 0.0859 0.58 NK_HLA L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 3.36e-01 0.0869 0.0902 0.58 NK_HLA L2
ENSG00000162607 USP1 878159 sc-eQTL 7.95e-01 0.0247 0.0946 0.58 NK_HLA L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 1.17e-01 -0.135 0.0856 0.58 NK_HLA L2
ENSG00000079739 PGM1 -278955 sc-eQTL 8.25e-01 0.0169 0.0765 0.575 NK_cytokine L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.88e-01 0.06 0.0864 0.575 NK_cytokine L2
ENSG00000116641 DOCK7 626070 sc-eQTL 3.48e-01 0.0752 0.08 0.575 NK_cytokine L2
ENSG00000125703 ATG4C 530324 sc-eQTL 4.52e-01 0.0617 0.0819 0.575 NK_cytokine L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 3.14e-02 0.182 0.084 0.575 NK_cytokine L2
ENSG00000162607 USP1 878159 sc-eQTL 4.04e-02 -0.182 0.0884 0.575 NK_cytokine L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 8.08e-01 -0.022 0.0904 0.575 NK_cytokine L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.63e-01 -0.00492 0.106 0.563 PB L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.29e-01 -0.0883 0.111 0.563 PB L2
ENSG00000116641 DOCK7 626070 sc-eQTL 4.96e-01 -0.0813 0.119 0.563 PB L2
ENSG00000125703 ATG4C 530324 sc-eQTL 9.72e-01 0.0037 0.104 0.563 PB L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.56e-01 0.147 0.103 0.563 PB L2
ENSG00000162607 USP1 878159 sc-eQTL 3.67e-02 -0.215 0.101 0.563 PB L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.17e-01 -0.0572 0.114 0.563 PB L2
ENSG00000079739 PGM1 -278955 sc-eQTL 8.11e-01 0.0195 0.0812 0.58 Pro_T L2
ENSG00000088035 ALG6 -53119 sc-eQTL 1.03e-01 -0.134 0.0821 0.58 Pro_T L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.68e-01 -0.0138 0.0829 0.58 Pro_T L2
ENSG00000125703 ATG4C 530324 sc-eQTL 8.79e-01 0.0111 0.0726 0.58 Pro_T L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 6.45e-01 -0.0336 0.0728 0.58 Pro_T L2
ENSG00000162607 USP1 878159 sc-eQTL 5.40e-01 0.0307 0.05 0.58 Pro_T L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.89e-01 0.0338 0.0846 0.58 Pro_T L2
ENSG00000079739 PGM1 -278955 sc-eQTL 5.99e-03 0.235 0.0847 0.579 Treg L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.00e-01 -0.0955 0.092 0.579 Treg L2
ENSG00000116641 DOCK7 626070 sc-eQTL 5.35e-02 0.163 0.0839 0.579 Treg L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.07e-02 -0.199 0.0854 0.579 Treg L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.27e-01 0.109 0.0902 0.579 Treg L2
ENSG00000162607 USP1 878159 sc-eQTL 8.86e-01 0.0126 0.0876 0.579 Treg L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 6.36e-01 0.0411 0.0866 0.579 Treg L2
ENSG00000079739 PGM1 -278955 sc-eQTL 6.87e-01 -0.0349 0.0866 0.573 cDC L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.98e-01 0.0596 0.0878 0.573 cDC L2
ENSG00000116641 DOCK7 626070 sc-eQTL 3.36e-02 0.182 0.0852 0.573 cDC L2
ENSG00000125703 ATG4C 530324 sc-eQTL 3.20e-01 0.0745 0.0747 0.573 cDC L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 8.06e-01 0.0233 0.0949 0.573 cDC L2
ENSG00000162607 USP1 878159 sc-eQTL 6.55e-01 0.0378 0.0845 0.573 cDC L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 9.09e-01 0.00869 0.0763 0.573 cDC L2
ENSG00000079739 PGM1 -278955 sc-eQTL 4.70e-01 -0.0589 0.0813 0.579 cMono_IL1B L2
ENSG00000088035 ALG6 -53119 sc-eQTL 9.37e-02 -0.136 0.081 0.579 cMono_IL1B L2
ENSG00000116641 DOCK7 626070 sc-eQTL 5.63e-01 0.0498 0.0859 0.579 cMono_IL1B L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.83e-01 -0.0649 0.0603 0.579 cMono_IL1B L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.39e-02 0.209 0.0844 0.579 cMono_IL1B L2
ENSG00000162607 USP1 878159 sc-eQTL 7.71e-01 -0.022 0.0755 0.579 cMono_IL1B L2
ENSG00000079739 PGM1 -278955 sc-eQTL 4.12e-02 0.185 0.0899 0.579 cMono_S100A L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.56e-01 0.0687 0.0919 0.579 cMono_S100A L2
ENSG00000116641 DOCK7 626070 sc-eQTL 5.65e-01 -0.0492 0.0852 0.579 cMono_S100A L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.09e-01 0.0926 0.0736 0.579 cMono_S100A L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 6.11e-03 0.227 0.0819 0.579 cMono_S100A L2
ENSG00000162607 USP1 878159 sc-eQTL 3.18e-02 0.183 0.0848 0.579 cMono_S100A L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.25e-01 0.00952 0.101 0.6 gdT L2
ENSG00000088035 ALG6 -53119 sc-eQTL 4.74e-03 -0.301 0.105 0.6 gdT L2
ENSG00000116641 DOCK7 626070 sc-eQTL 7.07e-01 0.0398 0.106 0.6 gdT L2
ENSG00000125703 ATG4C 530324 sc-eQTL 8.99e-02 -0.171 0.1 0.6 gdT L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.01e-01 -0.176 0.106 0.6 gdT L2
ENSG00000162607 USP1 878159 sc-eQTL 3.77e-01 0.0898 0.101 0.6 gdT L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 7.71e-01 -0.0309 0.106 0.6 gdT L2
ENSG00000079739 PGM1 -278955 sc-eQTL 8.35e-01 -0.019 0.0911 0.576 intMono L2
ENSG00000088035 ALG6 -53119 sc-eQTL 1.85e-01 -0.112 0.0845 0.576 intMono L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.96e-01 0.0114 0.0866 0.576 intMono L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.45e-01 -0.096 0.0824 0.576 intMono L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 5.96e-02 0.171 0.0903 0.576 intMono L2
ENSG00000162607 USP1 878159 sc-eQTL 3.53e-01 0.0862 0.0925 0.576 intMono L2
ENSG00000079739 PGM1 -278955 sc-eQTL 7.51e-01 0.0261 0.0821 0.572 ncMono L2
ENSG00000088035 ALG6 -53119 sc-eQTL 5.61e-01 -0.0526 0.0902 0.572 ncMono L2
ENSG00000116641 DOCK7 626070 sc-eQTL 2.65e-01 0.0989 0.0886 0.572 ncMono L2
ENSG00000125703 ATG4C 530324 sc-eQTL 8.24e-01 0.0185 0.083 0.572 ncMono L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 4.36e-01 0.0677 0.0867 0.572 ncMono L2
ENSG00000162607 USP1 878159 sc-eQTL 3.12e-01 -0.0896 0.0885 0.572 ncMono L2
ENSG00000079739 PGM1 -278955 sc-eQTL 9.59e-01 0.00514 0.1 0.596 pDC L2
ENSG00000088035 ALG6 -53119 sc-eQTL 3.59e-02 -0.203 0.096 0.596 pDC L2
ENSG00000116641 DOCK7 626070 sc-eQTL 8.39e-02 0.171 0.0985 0.596 pDC L2
ENSG00000125703 ATG4C 530324 sc-eQTL 2.87e-01 0.0951 0.0889 0.596 pDC L2
ENSG00000142856 ITGB3BP -279265 sc-eQTL 6.75e-02 0.182 0.0991 0.596 pDC L2
ENSG00000162607 USP1 878159 sc-eQTL 4.00e-01 -0.0859 0.102 0.596 pDC L2
ENSG00000203965 EFCAB7 -208916 sc-eQTL 4.27e-01 0.0704 0.0885 0.596 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -278955 sc-eQTL 5.97e-01 0.0464 0.0874 0.579 B_Memory LOneK1K
ENSG00000088035 ALG6 -53119 sc-eQTL 5.13e-01 -0.0633 0.0966 0.579 B_Memory LOneK1K
ENSG00000116641 DOCK7 626070 sc-eQTL 3.13e-01 -0.0847 0.0837 0.579 B_Memory LOneK1K
ENSG00000125703 ATG4C 530324 sc-eQTL 3.50e-01 0.0634 0.0677 0.579 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.09e-02 0.226 0.0878 0.579 B_Memory LOneK1K
ENSG00000162607 USP1 878159 sc-eQTL 8.17e-01 -0.02 0.0866 0.579 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -208916 sc-eQTL 4.14e-02 0.189 0.092 0.579 B_Memory LOneK1K
ENSG00000079739 PGM1 -278955 sc-eQTL 5.28e-01 -0.0567 0.0896 0.579 B_Naive LOneK1K
ENSG00000088035 ALG6 -53119 sc-eQTL 1.49e-01 -0.133 0.0919 0.579 B_Naive LOneK1K
ENSG00000116641 DOCK7 626070 sc-eQTL 2.31e-01 0.103 0.086 0.579 B_Naive LOneK1K
ENSG00000125703 ATG4C 530324 sc-eQTL 6.44e-01 0.0305 0.0658 0.579 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.76e-01 0.126 0.0927 0.579 B_Naive LOneK1K
ENSG00000162607 USP1 878159 sc-eQTL 2.05e-01 -0.101 0.0797 0.579 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -208916 sc-eQTL 2.14e-01 0.116 0.0932 0.579 B_Naive LOneK1K
ENSG00000079739 PGM1 -278955 sc-eQTL 4.12e-01 0.0685 0.0833 0.579 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -53119 sc-eQTL 2.87e-01 -0.0859 0.0806 0.579 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 626070 sc-eQTL 9.32e-01 0.00697 0.0814 0.579 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 530324 sc-eQTL 8.68e-01 0.00939 0.0562 0.579 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -279265 sc-eQTL 2.60e-03 0.248 0.0814 0.579 CD14_Mono LOneK1K
ENSG00000162607 USP1 878159 sc-eQTL 3.62e-01 0.0647 0.0709 0.579 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -278955 sc-eQTL 9.48e-01 0.00526 0.0798 0.575 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -53119 sc-eQTL 2.89e-01 -0.0962 0.0904 0.575 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 626070 sc-eQTL 3.56e-01 0.0828 0.0895 0.575 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 530324 sc-eQTL 5.84e-01 -0.042 0.0764 0.575 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -279265 sc-eQTL 1.42e-01 0.13 0.0883 0.575 CD16_Mono LOneK1K
ENSG00000162607 USP1 878159 sc-eQTL 3.40e-01 -0.0797 0.0832 0.575 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -278955 sc-eQTL 9.65e-02 0.114 0.0684 0.575 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -53119 sc-eQTL 6.78e-01 -0.0344 0.0826 0.575 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 626070 sc-eQTL 4.20e-01 0.0597 0.0739 0.575 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 530324 sc-eQTL 5.34e-01 -0.046 0.0739 0.575 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -279265 sc-eQTL 4.49e-03 0.247 0.0859 0.575 NK_CD56dim LOneK1K
ENSG00000162607 USP1 878159 sc-eQTL 1.55e-01 -0.113 0.0792 0.575 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -208916 sc-eQTL 5.40e-01 0.0593 0.0967 0.575 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -278955 eQTL 0.000161 -0.0685 0.0181 0.0 0.0 0.403
ENSG00000142856 ITGB3BP -279265 eQTL 0.00112 0.0971 0.0297 0.0 0.0 0.403

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -278955 5.08e-06 2.63e-06 6.41e-07 1.8e-06 4.37e-07 8.89e-07 1.63e-06 3.69e-07 1.86e-06 8.25e-07 1.93e-06 1.29e-06 4.79e-06 9.52e-07 1.26e-06 1.38e-06 1.1e-06 2.26e-06 1.44e-06 1.07e-06 9.86e-07 3.18e-06 2.68e-06 1.17e-06 2.57e-06 9.6e-07 1.13e-06 8.14e-07 2.15e-06 2.23e-06 1.96e-06 4.15e-07 6.65e-07 1.44e-06 1.63e-06 8.48e-07 8.07e-07 4.24e-07 1.32e-06 3.8e-07 2.11e-07 3.22e-06 4.19e-07 1.9e-07 3.51e-07 1.21e-06 5.32e-07 6.82e-07 5.73e-07