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Genes within 1Mb (chr1:63293770:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -299641 sc-eQTL 6.49e-01 -0.0352 0.0772 0.333 B L1
ENSG00000088035 ALG6 -73805 sc-eQTL 1.05e-02 -0.203 0.0788 0.333 B L1
ENSG00000116641 DOCK7 605384 sc-eQTL 9.10e-01 0.00907 0.08 0.333 B L1
ENSG00000125703 ATG4C 509638 sc-eQTL 1.39e-01 -0.0821 0.0553 0.333 B L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 9.08e-01 0.0102 0.0885 0.333 B L1
ENSG00000162607 USP1 857473 sc-eQTL 1.29e-01 -0.116 0.0764 0.333 B L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 9.25e-01 0.00859 0.0907 0.333 B L1
ENSG00000079739 PGM1 -299641 sc-eQTL 7.30e-01 0.0229 0.0662 0.333 CD4T L1
ENSG00000088035 ALG6 -73805 sc-eQTL 4.56e-01 0.0545 0.073 0.333 CD4T L1
ENSG00000116641 DOCK7 605384 sc-eQTL 4.34e-01 0.0579 0.0739 0.333 CD4T L1
ENSG00000125703 ATG4C 509638 sc-eQTL 1.91e-01 0.0781 0.0595 0.333 CD4T L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 5.14e-01 0.0553 0.0847 0.333 CD4T L1
ENSG00000162607 USP1 857473 sc-eQTL 7.26e-01 0.0203 0.0579 0.333 CD4T L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 3.94e-01 0.0649 0.076 0.333 CD4T L1
ENSG00000079739 PGM1 -299641 sc-eQTL 2.80e-01 -0.0791 0.073 0.333 CD8T L1
ENSG00000088035 ALG6 -73805 sc-eQTL 4.40e-01 0.0624 0.0805 0.333 CD8T L1
ENSG00000116641 DOCK7 605384 sc-eQTL 3.14e-01 0.0822 0.0815 0.333 CD8T L1
ENSG00000125703 ATG4C 509638 sc-eQTL 2.71e-01 -0.0854 0.0774 0.333 CD8T L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 1.38e-01 0.128 0.0864 0.333 CD8T L1
ENSG00000162607 USP1 857473 sc-eQTL 7.31e-01 0.0232 0.0676 0.333 CD8T L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 5.47e-01 0.0522 0.0865 0.333 CD8T L1
ENSG00000079739 PGM1 -299641 sc-eQTL 8.21e-01 -0.0188 0.0828 0.327 DC L1
ENSG00000088035 ALG6 -73805 sc-eQTL 9.71e-01 0.00311 0.0855 0.327 DC L1
ENSG00000116641 DOCK7 605384 sc-eQTL 1.75e-01 0.119 0.0872 0.327 DC L1
ENSG00000125703 ATG4C 509638 sc-eQTL 6.33e-02 0.127 0.068 0.327 DC L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 5.25e-01 0.0609 0.0957 0.327 DC L1
ENSG00000162607 USP1 857473 sc-eQTL 2.96e-01 -0.0875 0.0834 0.327 DC L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 5.24e-01 0.0531 0.0833 0.327 DC L1
ENSG00000079739 PGM1 -299641 sc-eQTL 9.18e-01 -0.00828 0.0804 0.333 Mono L1
ENSG00000088035 ALG6 -73805 sc-eQTL 9.76e-01 -0.00249 0.0839 0.333 Mono L1
ENSG00000116641 DOCK7 605384 sc-eQTL 1.13e-01 0.128 0.0807 0.333 Mono L1
ENSG00000125703 ATG4C 509638 sc-eQTL 7.20e-01 -0.0196 0.0548 0.333 Mono L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.81e-01 0.0934 0.0864 0.333 Mono L1
ENSG00000162607 USP1 857473 sc-eQTL 4.15e-01 -0.058 0.0711 0.333 Mono L1
ENSG00000079739 PGM1 -299641 sc-eQTL 5.13e-01 0.0449 0.0685 0.33 NK L1
ENSG00000088035 ALG6 -73805 sc-eQTL 6.38e-01 -0.0379 0.0804 0.33 NK L1
ENSG00000116641 DOCK7 605384 sc-eQTL 7.44e-02 0.118 0.0658 0.33 NK L1
ENSG00000125703 ATG4C 509638 sc-eQTL 7.19e-01 -0.0256 0.0711 0.33 NK L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.04e-02 0.16 0.0878 0.33 NK L1
ENSG00000162607 USP1 857473 sc-eQTL 5.01e-01 -0.0532 0.079 0.33 NK L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 4.89e-01 -0.0665 0.0959 0.33 NK L1
ENSG00000079739 PGM1 -299641 sc-eQTL 6.98e-01 -0.0298 0.0768 0.333 Other_T L1
ENSG00000088035 ALG6 -73805 sc-eQTL 6.25e-02 -0.143 0.0766 0.333 Other_T L1
ENSG00000116641 DOCK7 605384 sc-eQTL 8.43e-01 -0.0157 0.0788 0.333 Other_T L1
ENSG00000125703 ATG4C 509638 sc-eQTL 6.42e-01 -0.0318 0.0682 0.333 Other_T L1
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.03e-01 -0.0151 0.0605 0.333 Other_T L1
ENSG00000162607 USP1 857473 sc-eQTL 3.45e-01 -0.0495 0.0523 0.333 Other_T L1
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.07e-01 -0.0481 0.0933 0.333 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -299641 sc-eQTL 7.84e-01 -0.0283 0.103 0.349 B_Activated L2
ENSG00000088035 ALG6 -73805 sc-eQTL 9.77e-01 -0.0028 0.0987 0.349 B_Activated L2
ENSG00000116641 DOCK7 605384 sc-eQTL 3.94e-01 0.0783 0.0917 0.349 B_Activated L2
ENSG00000125703 ATG4C 509638 sc-eQTL 2.81e-01 -0.104 0.0963 0.349 B_Activated L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.58e-01 0.107 0.094 0.349 B_Activated L2
ENSG00000162607 USP1 857473 sc-eQTL 4.52e-02 0.204 0.101 0.349 B_Activated L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.85e-01 -0.0363 0.0893 0.349 B_Activated L2
ENSG00000079739 PGM1 -299641 sc-eQTL 4.24e-01 -0.0744 0.0929 0.335 B_Intermediate L2
ENSG00000088035 ALG6 -73805 sc-eQTL 5.67e-01 -0.0541 0.0945 0.335 B_Intermediate L2
ENSG00000116641 DOCK7 605384 sc-eQTL 5.92e-01 -0.0484 0.0902 0.335 B_Intermediate L2
ENSG00000125703 ATG4C 509638 sc-eQTL 5.94e-01 -0.0408 0.0764 0.335 B_Intermediate L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.63e-01 0.0157 0.0911 0.335 B_Intermediate L2
ENSG00000162607 USP1 857473 sc-eQTL 1.33e-01 -0.136 0.0904 0.335 B_Intermediate L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.11e-01 0.046 0.0901 0.335 B_Intermediate L2
ENSG00000079739 PGM1 -299641 sc-eQTL 7.38e-01 -0.0302 0.0902 0.336 B_Memory L2
ENSG00000088035 ALG6 -73805 sc-eQTL 1.75e-03 -0.284 0.0896 0.336 B_Memory L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.22e-01 -0.00843 0.0861 0.336 B_Memory L2
ENSG00000125703 ATG4C 509638 sc-eQTL 3.71e-01 0.0732 0.0816 0.336 B_Memory L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 6.87e-02 -0.17 0.0929 0.336 B_Memory L2
ENSG00000162607 USP1 857473 sc-eQTL 3.77e-01 -0.0834 0.0943 0.336 B_Memory L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 9.19e-01 0.00952 0.0929 0.336 B_Memory L2
ENSG00000079739 PGM1 -299641 sc-eQTL 4.68e-01 -0.0667 0.0918 0.333 B_Naive1 L2
ENSG00000088035 ALG6 -73805 sc-eQTL 7.46e-03 -0.245 0.0907 0.333 B_Naive1 L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.87e-01 -0.00144 0.0884 0.333 B_Naive1 L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.71e-01 -0.029 0.0681 0.333 B_Naive1 L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.15e-01 0.112 0.09 0.333 B_Naive1 L2
ENSG00000162607 USP1 857473 sc-eQTL 3.67e-01 -0.0717 0.0793 0.333 B_Naive1 L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 7.28e-01 0.0335 0.0964 0.333 B_Naive1 L2
ENSG00000079739 PGM1 -299641 sc-eQTL 8.06e-01 -0.0222 0.0903 0.335 B_Naive2 L2
ENSG00000088035 ALG6 -73805 sc-eQTL 1.87e-01 0.124 0.0938 0.335 B_Naive2 L2
ENSG00000116641 DOCK7 605384 sc-eQTL 5.49e-01 0.0543 0.0905 0.335 B_Naive2 L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.84e-01 0.0017 0.0872 0.335 B_Naive2 L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 3.53e-01 -0.0878 0.0943 0.335 B_Naive2 L2
ENSG00000162607 USP1 857473 sc-eQTL 7.98e-01 -0.023 0.09 0.335 B_Naive2 L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 3.86e-01 -0.0816 0.0939 0.335 B_Naive2 L2
ENSG00000079739 PGM1 -299641 sc-eQTL 3.07e-02 0.196 0.0902 0.341 CD4_CTL L2
ENSG00000088035 ALG6 -73805 sc-eQTL 7.67e-02 -0.17 0.0958 0.341 CD4_CTL L2
ENSG00000116641 DOCK7 605384 sc-eQTL 2.19e-01 0.104 0.0841 0.341 CD4_CTL L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.36e-01 0.0413 0.0873 0.341 CD4_CTL L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 6.29e-01 0.0452 0.0933 0.341 CD4_CTL L2
ENSG00000162607 USP1 857473 sc-eQTL 1.23e-01 0.137 0.0883 0.341 CD4_CTL L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 2.76e-01 0.0966 0.0885 0.341 CD4_CTL L2
ENSG00000079739 PGM1 -299641 sc-eQTL 9.39e-01 0.00567 0.0747 0.333 CD4_Naive L2
ENSG00000088035 ALG6 -73805 sc-eQTL 3.66e-01 0.0733 0.0809 0.333 CD4_Naive L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.21e-01 -0.00791 0.0797 0.333 CD4_Naive L2
ENSG00000125703 ATG4C 509638 sc-eQTL 7.07e-01 0.0265 0.0704 0.333 CD4_Naive L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.70e-01 0.0252 0.0861 0.333 CD4_Naive L2
ENSG00000162607 USP1 857473 sc-eQTL 8.57e-01 0.0118 0.0658 0.333 CD4_Naive L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 4.87e-01 0.0595 0.0854 0.333 CD4_Naive L2
ENSG00000079739 PGM1 -299641 sc-eQTL 4.41e-01 -0.0595 0.077 0.333 CD4_TCM L2
ENSG00000088035 ALG6 -73805 sc-eQTL 8.84e-01 -0.0131 0.0895 0.333 CD4_TCM L2
ENSG00000116641 DOCK7 605384 sc-eQTL 6.05e-01 0.0411 0.0793 0.333 CD4_TCM L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.68e-02 0.141 0.0766 0.333 CD4_TCM L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.61e-01 0.102 0.0908 0.333 CD4_TCM L2
ENSG00000162607 USP1 857473 sc-eQTL 3.46e-01 -0.0704 0.0745 0.333 CD4_TCM L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 4.65e-01 0.0645 0.088 0.333 CD4_TCM L2
ENSG00000079739 PGM1 -299641 sc-eQTL 9.87e-01 -0.00153 0.0913 0.333 CD4_TEM L2
ENSG00000088035 ALG6 -73805 sc-eQTL 7.15e-01 -0.0336 0.0917 0.333 CD4_TEM L2
ENSG00000116641 DOCK7 605384 sc-eQTL 7.88e-01 -0.0241 0.0894 0.333 CD4_TEM L2
ENSG00000125703 ATG4C 509638 sc-eQTL 8.48e-01 0.0167 0.0869 0.333 CD4_TEM L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.24e-01 0.0199 0.0897 0.333 CD4_TEM L2
ENSG00000162607 USP1 857473 sc-eQTL 6.73e-02 0.155 0.0843 0.333 CD4_TEM L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 9.79e-01 0.00243 0.0929 0.333 CD4_TEM L2
ENSG00000079739 PGM1 -299641 sc-eQTL 9.25e-01 0.0078 0.0826 0.333 CD8_CTL L2
ENSG00000088035 ALG6 -73805 sc-eQTL 4.13e-01 -0.0719 0.0877 0.333 CD8_CTL L2
ENSG00000116641 DOCK7 605384 sc-eQTL 2.70e-01 0.092 0.0831 0.333 CD8_CTL L2
ENSG00000125703 ATG4C 509638 sc-eQTL 1.33e-01 -0.133 0.0883 0.333 CD8_CTL L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 4.34e-01 0.0722 0.0921 0.333 CD8_CTL L2
ENSG00000162607 USP1 857473 sc-eQTL 4.90e-01 -0.057 0.0825 0.333 CD8_CTL L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 2.90e-01 0.0999 0.0943 0.333 CD8_CTL L2
ENSG00000079739 PGM1 -299641 sc-eQTL 6.28e-01 0.0406 0.0838 0.333 CD8_Naive L2
ENSG00000088035 ALG6 -73805 sc-eQTL 2.61e-01 0.0975 0.0865 0.333 CD8_Naive L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.00e-01 0.0113 0.0897 0.333 CD8_Naive L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.97e-01 0.0335 0.0861 0.333 CD8_Naive L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 1.18e-01 0.136 0.0867 0.333 CD8_Naive L2
ENSG00000162607 USP1 857473 sc-eQTL 4.36e-01 0.0574 0.0736 0.333 CD8_Naive L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.19e-01 0.0409 0.0822 0.333 CD8_Naive L2
ENSG00000079739 PGM1 -299641 sc-eQTL 5.90e-01 -0.0494 0.0915 0.333 CD8_TCM L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.59e-02 0.17 0.0919 0.333 CD8_TCM L2
ENSG00000116641 DOCK7 605384 sc-eQTL 8.97e-01 0.0117 0.0905 0.333 CD8_TCM L2
ENSG00000125703 ATG4C 509638 sc-eQTL 1.65e-01 0.128 0.0921 0.333 CD8_TCM L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.96e-01 0.0939 0.0897 0.333 CD8_TCM L2
ENSG00000162607 USP1 857473 sc-eQTL 7.93e-01 -0.0227 0.0865 0.333 CD8_TCM L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 4.85e-01 0.0641 0.0915 0.333 CD8_TCM L2
ENSG00000079739 PGM1 -299641 sc-eQTL 1.03e-02 -0.236 0.091 0.34 CD8_TEM L2
ENSG00000088035 ALG6 -73805 sc-eQTL 5.64e-01 -0.0536 0.0928 0.34 CD8_TEM L2
ENSG00000116641 DOCK7 605384 sc-eQTL 8.35e-01 -0.0188 0.09 0.34 CD8_TEM L2
ENSG00000125703 ATG4C 509638 sc-eQTL 8.70e-01 -0.0142 0.0865 0.34 CD8_TEM L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.13e-01 0.0222 0.0937 0.34 CD8_TEM L2
ENSG00000162607 USP1 857473 sc-eQTL 9.04e-01 0.0107 0.0894 0.34 CD8_TEM L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 3.96e-02 -0.186 0.0899 0.34 CD8_TEM L2
ENSG00000079739 PGM1 -299641 sc-eQTL 3.85e-02 -0.183 0.088 0.335 MAIT L2
ENSG00000088035 ALG6 -73805 sc-eQTL 1.84e-01 -0.117 0.0877 0.335 MAIT L2
ENSG00000116641 DOCK7 605384 sc-eQTL 7.71e-01 -0.0246 0.0843 0.335 MAIT L2
ENSG00000125703 ATG4C 509638 sc-eQTL 5.26e-01 0.0564 0.0889 0.335 MAIT L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.71e-01 0.026 0.0891 0.335 MAIT L2
ENSG00000162607 USP1 857473 sc-eQTL 2.55e-01 -0.101 0.0881 0.335 MAIT L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.67e-01 -0.0395 0.0917 0.335 MAIT L2
ENSG00000079739 PGM1 -299641 sc-eQTL 5.04e-01 0.059 0.0881 0.338 NK_CD56bright L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.95e-01 -0.0355 0.0904 0.338 NK_CD56bright L2
ENSG00000116641 DOCK7 605384 sc-eQTL 8.71e-01 0.0127 0.0783 0.338 NK_CD56bright L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.78e-01 -0.0364 0.0875 0.338 NK_CD56bright L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 1.43e-01 0.133 0.0906 0.338 NK_CD56bright L2
ENSG00000162607 USP1 857473 sc-eQTL 3.00e-02 0.203 0.0929 0.338 NK_CD56bright L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 3.24e-01 -0.0886 0.0897 0.338 NK_CD56bright L2
ENSG00000079739 PGM1 -299641 sc-eQTL 5.76e-01 0.0402 0.0718 0.332 NK_CD56dim L2
ENSG00000088035 ALG6 -73805 sc-eQTL 2.00e-01 -0.117 0.0907 0.332 NK_CD56dim L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.81e-01 -0.00187 0.0793 0.332 NK_CD56dim L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.96e-01 -0.000398 0.0805 0.332 NK_CD56dim L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 4.13e-02 0.186 0.0907 0.332 NK_CD56dim L2
ENSG00000162607 USP1 857473 sc-eQTL 4.98e-01 -0.0602 0.0888 0.332 NK_CD56dim L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 7.09e-01 0.0369 0.0989 0.332 NK_CD56dim L2
ENSG00000079739 PGM1 -299641 sc-eQTL 8.03e-01 -0.0243 0.0977 0.333 NK_HLA L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.56e-01 0.0451 0.101 0.333 NK_HLA L2
ENSG00000116641 DOCK7 605384 sc-eQTL 3.89e-01 -0.0667 0.0773 0.333 NK_HLA L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.18e-01 -0.045 0.0901 0.333 NK_HLA L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 1.65e-01 0.131 0.0941 0.333 NK_HLA L2
ENSG00000162607 USP1 857473 sc-eQTL 7.97e-01 0.0255 0.099 0.333 NK_HLA L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 5.31e-01 -0.0565 0.09 0.333 NK_HLA L2
ENSG00000079739 PGM1 -299641 sc-eQTL 9.96e-01 0.000373 0.0778 0.332 NK_cytokine L2
ENSG00000088035 ALG6 -73805 sc-eQTL 7.64e-01 0.0264 0.0879 0.332 NK_cytokine L2
ENSG00000116641 DOCK7 605384 sc-eQTL 2.19e-02 0.186 0.0804 0.332 NK_cytokine L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.96e-01 -0.000402 0.0833 0.332 NK_cytokine L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.92e-01 0.0227 0.0863 0.332 NK_cytokine L2
ENSG00000162607 USP1 857473 sc-eQTL 7.24e-01 -0.032 0.0907 0.332 NK_cytokine L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 2.30e-01 -0.11 0.0916 0.332 NK_cytokine L2
ENSG00000079739 PGM1 -299641 sc-eQTL 7.73e-01 0.0336 0.116 0.307 PB L2
ENSG00000088035 ALG6 -73805 sc-eQTL 9.50e-01 -0.00761 0.122 0.307 PB L2
ENSG00000116641 DOCK7 605384 sc-eQTL 5.53e-01 -0.0775 0.13 0.307 PB L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.93e-01 -0.000995 0.114 0.307 PB L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 4.48e-02 0.227 0.112 0.307 PB L2
ENSG00000162607 USP1 857473 sc-eQTL 7.35e-01 0.0383 0.113 0.307 PB L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 5.25e-01 -0.0795 0.125 0.307 PB L2
ENSG00000079739 PGM1 -299641 sc-eQTL 2.96e-01 0.0871 0.083 0.333 Pro_T L2
ENSG00000088035 ALG6 -73805 sc-eQTL 5.10e-01 -0.0558 0.0846 0.333 Pro_T L2
ENSG00000116641 DOCK7 605384 sc-eQTL 2.97e-01 -0.0885 0.0847 0.333 Pro_T L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.53e-01 0.00435 0.0744 0.333 Pro_T L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.94e-01 -0.0195 0.0746 0.333 Pro_T L2
ENSG00000162607 USP1 857473 sc-eQTL 1.98e-01 0.0659 0.0511 0.333 Pro_T L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 4.65e-01 0.0634 0.0866 0.333 Pro_T L2
ENSG00000079739 PGM1 -299641 sc-eQTL 4.39e-01 0.0681 0.0878 0.333 Treg L2
ENSG00000088035 ALG6 -73805 sc-eQTL 1.37e-01 0.14 0.0936 0.333 Treg L2
ENSG00000116641 DOCK7 605384 sc-eQTL 4.66e-02 0.171 0.0855 0.333 Treg L2
ENSG00000125703 ATG4C 509638 sc-eQTL 3.44e-01 -0.0835 0.088 0.333 Treg L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.78e-01 -0.0142 0.0923 0.333 Treg L2
ENSG00000162607 USP1 857473 sc-eQTL 4.35e-01 0.0697 0.0892 0.333 Treg L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 1.64e-01 0.123 0.0879 0.333 Treg L2
ENSG00000079739 PGM1 -299641 sc-eQTL 7.10e-01 0.0333 0.0896 0.344 cDC L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.12e-01 0.0462 0.0909 0.344 cDC L2
ENSG00000116641 DOCK7 605384 sc-eQTL 1.42e-01 0.131 0.0887 0.344 cDC L2
ENSG00000125703 ATG4C 509638 sc-eQTL 4.03e-02 0.158 0.0766 0.344 cDC L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.86e-01 0.0141 0.0982 0.344 cDC L2
ENSG00000162607 USP1 857473 sc-eQTL 6.25e-01 -0.0428 0.0874 0.344 cDC L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 9.33e-01 0.00665 0.0789 0.344 cDC L2
ENSG00000079739 PGM1 -299641 sc-eQTL 1.72e-01 -0.114 0.083 0.333 cMono_IL1B L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.47e-01 -0.0383 0.0835 0.333 cMono_IL1B L2
ENSG00000116641 DOCK7 605384 sc-eQTL 5.04e-02 0.172 0.0872 0.333 cMono_IL1B L2
ENSG00000125703 ATG4C 509638 sc-eQTL 9.39e-01 0.00475 0.0619 0.333 cMono_IL1B L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 2.80e-01 0.0948 0.0875 0.333 cMono_IL1B L2
ENSG00000162607 USP1 857473 sc-eQTL 6.40e-02 -0.143 0.0767 0.333 cMono_IL1B L2
ENSG00000079739 PGM1 -299641 sc-eQTL 2.37e-01 0.11 0.0927 0.333 cMono_S100A L2
ENSG00000088035 ALG6 -73805 sc-eQTL 1.74e-01 0.128 0.0939 0.333 cMono_S100A L2
ENSG00000116641 DOCK7 605384 sc-eQTL 7.57e-01 0.0271 0.0874 0.333 cMono_S100A L2
ENSG00000125703 ATG4C 509638 sc-eQTL 7.68e-01 0.0223 0.0757 0.333 cMono_S100A L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 3.47e-01 0.0804 0.0852 0.333 cMono_S100A L2
ENSG00000162607 USP1 857473 sc-eQTL 2.89e-01 0.0932 0.0876 0.333 cMono_S100A L2
ENSG00000079739 PGM1 -299641 sc-eQTL 9.57e-01 -0.00523 0.0968 0.361 gdT L2
ENSG00000088035 ALG6 -73805 sc-eQTL 6.81e-02 -0.187 0.102 0.361 gdT L2
ENSG00000116641 DOCK7 605384 sc-eQTL 6.91e-01 0.0403 0.101 0.361 gdT L2
ENSG00000125703 ATG4C 509638 sc-eQTL 2.29e-02 -0.218 0.0949 0.361 gdT L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 9.95e-01 0.000623 0.103 0.361 gdT L2
ENSG00000162607 USP1 857473 sc-eQTL 6.89e-01 0.039 0.0971 0.361 gdT L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 1.50e-01 -0.145 0.1 0.361 gdT L2
ENSG00000079739 PGM1 -299641 sc-eQTL 1.90e-01 -0.125 0.0946 0.327 intMono L2
ENSG00000088035 ALG6 -73805 sc-eQTL 7.84e-01 -0.0243 0.0885 0.327 intMono L2
ENSG00000116641 DOCK7 605384 sc-eQTL 9.26e-01 0.00841 0.0904 0.327 intMono L2
ENSG00000125703 ATG4C 509638 sc-eQTL 3.62e-01 -0.0787 0.0861 0.327 intMono L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 6.75e-01 0.0399 0.095 0.327 intMono L2
ENSG00000162607 USP1 857473 sc-eQTL 2.78e-01 0.105 0.0964 0.327 intMono L2
ENSG00000079739 PGM1 -299641 sc-eQTL 4.67e-02 0.169 0.0843 0.333 ncMono L2
ENSG00000088035 ALG6 -73805 sc-eQTL 4.36e-01 -0.0729 0.0934 0.333 ncMono L2
ENSG00000116641 DOCK7 605384 sc-eQTL 8.28e-02 0.159 0.0914 0.333 ncMono L2
ENSG00000125703 ATG4C 509638 sc-eQTL 6.58e-01 -0.0382 0.086 0.333 ncMono L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 6.05e-01 -0.0466 0.0899 0.333 ncMono L2
ENSG00000162607 USP1 857473 sc-eQTL 5.55e-01 -0.0544 0.0919 0.333 ncMono L2
ENSG00000079739 PGM1 -299641 sc-eQTL 8.26e-01 0.022 0.0998 0.35 pDC L2
ENSG00000088035 ALG6 -73805 sc-eQTL 3.89e-01 -0.0837 0.097 0.35 pDC L2
ENSG00000116641 DOCK7 605384 sc-eQTL 2.23e-01 0.121 0.0988 0.35 pDC L2
ENSG00000125703 ATG4C 509638 sc-eQTL 8.99e-01 -0.0114 0.0891 0.35 pDC L2
ENSG00000142856 ITGB3BP -299951 sc-eQTL 7.43e-01 0.0328 0.0999 0.35 pDC L2
ENSG00000162607 USP1 857473 sc-eQTL 8.46e-01 -0.0199 0.102 0.35 pDC L2
ENSG00000203965 EFCAB7 -229602 sc-eQTL 5.34e-02 0.17 0.0874 0.35 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -299641 sc-eQTL 6.79e-01 -0.0357 0.0859 0.333 B_Memory LOneK1K
ENSG00000088035 ALG6 -73805 sc-eQTL 1.00e-02 -0.243 0.0935 0.333 B_Memory LOneK1K
ENSG00000116641 DOCK7 605384 sc-eQTL 6.49e-01 -0.0375 0.0824 0.333 B_Memory LOneK1K
ENSG00000125703 ATG4C 509638 sc-eQTL 7.42e-01 -0.022 0.0666 0.333 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -299951 sc-eQTL 4.13e-01 -0.0718 0.0875 0.333 B_Memory LOneK1K
ENSG00000162607 USP1 857473 sc-eQTL 2.88e-01 -0.0904 0.0848 0.333 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -229602 sc-eQTL 8.25e-01 0.0203 0.0913 0.333 B_Memory LOneK1K
ENSG00000079739 PGM1 -299641 sc-eQTL 4.67e-01 -0.0652 0.0894 0.333 B_Naive LOneK1K
ENSG00000088035 ALG6 -73805 sc-eQTL 9.67e-02 -0.153 0.0915 0.333 B_Naive LOneK1K
ENSG00000116641 DOCK7 605384 sc-eQTL 4.66e-01 0.0627 0.0859 0.333 B_Naive LOneK1K
ENSG00000125703 ATG4C 509638 sc-eQTL 6.80e-01 -0.0271 0.0656 0.333 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.56e-01 0.0169 0.0928 0.333 B_Naive LOneK1K
ENSG00000162607 USP1 857473 sc-eQTL 1.84e-01 -0.106 0.0794 0.333 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -229602 sc-eQTL 9.72e-01 -0.00322 0.0933 0.333 B_Naive LOneK1K
ENSG00000079739 PGM1 -299641 sc-eQTL 9.13e-01 0.00932 0.0854 0.333 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -73805 sc-eQTL 9.04e-01 0.01 0.0827 0.333 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 605384 sc-eQTL 1.48e-01 0.12 0.0828 0.333 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 509638 sc-eQTL 8.09e-01 0.0139 0.0575 0.333 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -299951 sc-eQTL 3.50e-01 0.0796 0.085 0.333 CD14_Mono LOneK1K
ENSG00000162607 USP1 857473 sc-eQTL 5.42e-01 -0.0444 0.0727 0.333 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -299641 sc-eQTL 8.89e-01 0.0116 0.0831 0.328 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -73805 sc-eQTL 4.12e-01 -0.0775 0.0942 0.328 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 605384 sc-eQTL 3.66e-01 0.0844 0.0932 0.328 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 509638 sc-eQTL 3.31e-01 -0.0773 0.0794 0.328 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -299951 sc-eQTL 8.20e-01 0.0211 0.0924 0.328 CD16_Mono LOneK1K
ENSG00000162607 USP1 857473 sc-eQTL 8.33e-01 -0.0183 0.0868 0.328 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -299641 sc-eQTL 4.97e-01 0.0475 0.0699 0.332 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -73805 sc-eQTL 6.98e-01 -0.0326 0.084 0.332 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 605384 sc-eQTL 1.09e-01 0.12 0.0748 0.332 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 509638 sc-eQTL 7.31e-01 -0.0258 0.0751 0.332 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -299951 sc-eQTL 1.58e-01 0.126 0.0886 0.332 NK_CD56dim LOneK1K
ENSG00000162607 USP1 857473 sc-eQTL 2.00e-01 -0.103 0.0805 0.332 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -229602 sc-eQTL 6.45e-01 -0.0454 0.0983 0.332 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -299641 eQTL 0.000429 -0.063 0.0178 0.0 0.0 0.39

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -299641 1.33e-06 9.88e-07 2.57e-07 7.39e-07 3.47e-07 4.81e-07 1.34e-06 4.1e-07 1.44e-06 4.7e-07 1.49e-06 6.61e-07 1.98e-06 2.55e-07 5.31e-07 9.16e-07 8.42e-07 6.58e-07 8.48e-07 6.33e-07 6.61e-07 1.45e-06 8.89e-07 5.74e-07 1.97e-06 5.15e-07 9.02e-07 7.01e-07 1.29e-06 1.24e-06 6.02e-07 2.1e-07 2.02e-07 6.86e-07 5.65e-07 4.36e-07 5.61e-07 2.31e-07 4.1e-07 2.91e-07 2.85e-07 1.59e-06 9.42e-08 3.38e-08 2.49e-07 1.23e-07 2.24e-07 2.77e-08 1.71e-07