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Genes within 1Mb (chr1:63288065:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -305346 sc-eQTL 7.00e-01 -0.0291 0.0754 0.348 B L1
ENSG00000088035 ALG6 -79510 sc-eQTL 4.79e-03 -0.219 0.0767 0.348 B L1
ENSG00000116641 DOCK7 599679 sc-eQTL 9.83e-01 -0.00167 0.0782 0.348 B L1
ENSG00000125703 ATG4C 503933 sc-eQTL 1.85e-01 -0.072 0.0541 0.348 B L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 8.35e-01 0.018 0.0865 0.348 B L1
ENSG00000162607 USP1 851768 sc-eQTL 5.21e-01 -0.0482 0.075 0.348 B L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 8.70e-01 0.0145 0.0886 0.348 B L1
ENSG00000079739 PGM1 -305346 sc-eQTL 9.12e-01 0.00711 0.0643 0.348 CD4T L1
ENSG00000088035 ALG6 -79510 sc-eQTL 4.12e-01 0.0583 0.0709 0.348 CD4T L1
ENSG00000116641 DOCK7 599679 sc-eQTL 5.83e-01 0.0395 0.0718 0.348 CD4T L1
ENSG00000125703 ATG4C 503933 sc-eQTL 6.45e-02 0.107 0.0576 0.348 CD4T L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 6.53e-01 0.0371 0.0823 0.348 CD4T L1
ENSG00000162607 USP1 851768 sc-eQTL 5.68e-01 0.0322 0.0563 0.348 CD4T L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.79e-01 0.0651 0.0738 0.348 CD4T L1
ENSG00000079739 PGM1 -305346 sc-eQTL 2.38e-01 -0.0839 0.0709 0.348 CD8T L1
ENSG00000088035 ALG6 -79510 sc-eQTL 3.95e-01 0.0667 0.0782 0.348 CD8T L1
ENSG00000116641 DOCK7 599679 sc-eQTL 3.20e-02 0.17 0.0785 0.348 CD8T L1
ENSG00000125703 ATG4C 503933 sc-eQTL 4.18e-01 -0.0611 0.0753 0.348 CD8T L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.17e-01 0.104 0.084 0.348 CD8T L1
ENSG00000162607 USP1 851768 sc-eQTL 9.41e-01 0.00483 0.0657 0.348 CD8T L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 5.32e-01 0.0526 0.084 0.348 CD8T L1
ENSG00000079739 PGM1 -305346 sc-eQTL 9.78e-01 0.00226 0.0802 0.342 DC L1
ENSG00000088035 ALG6 -79510 sc-eQTL 5.46e-01 0.0501 0.0827 0.342 DC L1
ENSG00000116641 DOCK7 599679 sc-eQTL 2.67e-01 0.0941 0.0846 0.342 DC L1
ENSG00000125703 ATG4C 503933 sc-eQTL 8.71e-02 0.113 0.0659 0.342 DC L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 5.05e-01 0.0618 0.0927 0.342 DC L1
ENSG00000162607 USP1 851768 sc-eQTL 1.82e-01 -0.108 0.0807 0.342 DC L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.07e-01 0.0825 0.0806 0.342 DC L1
ENSG00000079739 PGM1 -305346 sc-eQTL 7.23e-01 -0.0277 0.0781 0.348 Mono L1
ENSG00000088035 ALG6 -79510 sc-eQTL 7.24e-01 -0.0288 0.0815 0.348 Mono L1
ENSG00000116641 DOCK7 599679 sc-eQTL 3.39e-01 0.0754 0.0787 0.348 Mono L1
ENSG00000125703 ATG4C 503933 sc-eQTL 9.41e-01 -0.00398 0.0533 0.348 Mono L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 3.76e-01 0.0745 0.084 0.348 Mono L1
ENSG00000162607 USP1 851768 sc-eQTL 3.40e-01 -0.066 0.069 0.348 Mono L1
ENSG00000079739 PGM1 -305346 sc-eQTL 6.45e-01 0.0308 0.0666 0.345 NK L1
ENSG00000088035 ALG6 -79510 sc-eQTL 9.41e-01 0.00579 0.0782 0.345 NK L1
ENSG00000116641 DOCK7 599679 sc-eQTL 1.18e-01 0.101 0.064 0.345 NK L1
ENSG00000125703 ATG4C 503933 sc-eQTL 7.94e-01 -0.0181 0.0691 0.345 NK L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.33e-01 0.102 0.0857 0.345 NK L1
ENSG00000162607 USP1 851768 sc-eQTL 9.70e-01 -0.00294 0.0768 0.345 NK L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 2.65e-01 -0.104 0.0931 0.345 NK L1
ENSG00000079739 PGM1 -305346 sc-eQTL 7.68e-01 -0.0222 0.0753 0.348 Other_T L1
ENSG00000088035 ALG6 -79510 sc-eQTL 3.18e-02 -0.162 0.0749 0.348 Other_T L1
ENSG00000116641 DOCK7 599679 sc-eQTL 8.92e-01 -0.0105 0.0773 0.348 Other_T L1
ENSG00000125703 ATG4C 503933 sc-eQTL 6.45e-01 -0.0308 0.0669 0.348 Other_T L1
ENSG00000142856 ITGB3BP -305656 sc-eQTL 5.02e-01 -0.0399 0.0592 0.348 Other_T L1
ENSG00000162607 USP1 851768 sc-eQTL 5.13e-01 -0.0337 0.0514 0.348 Other_T L1
ENSG00000203965 EFCAB7 -235307 sc-eQTL 5.84e-01 -0.0502 0.0915 0.348 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -305346 sc-eQTL 9.32e-01 -0.00864 0.101 0.362 B_Activated L2
ENSG00000088035 ALG6 -79510 sc-eQTL 9.27e-01 -0.00885 0.0964 0.362 B_Activated L2
ENSG00000116641 DOCK7 599679 sc-eQTL 3.44e-01 0.0849 0.0895 0.362 B_Activated L2
ENSG00000125703 ATG4C 503933 sc-eQTL 5.23e-01 -0.0604 0.0943 0.362 B_Activated L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 1.96e-01 0.119 0.0918 0.362 B_Activated L2
ENSG00000162607 USP1 851768 sc-eQTL 2.30e-02 0.226 0.0985 0.362 B_Activated L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 5.31e-01 -0.0548 0.0872 0.362 B_Activated L2
ENSG00000079739 PGM1 -305346 sc-eQTL 4.13e-01 -0.0742 0.0906 0.35 B_Intermediate L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.49e-01 -0.0863 0.092 0.35 B_Intermediate L2
ENSG00000116641 DOCK7 599679 sc-eQTL 5.85e-01 -0.0481 0.088 0.35 B_Intermediate L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.96e-01 -0.0193 0.0745 0.35 B_Intermediate L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.66e-01 -0.0038 0.0888 0.35 B_Intermediate L2
ENSG00000162607 USP1 851768 sc-eQTL 2.42e-01 -0.104 0.0883 0.35 B_Intermediate L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 7.45e-01 0.0286 0.0879 0.35 B_Intermediate L2
ENSG00000079739 PGM1 -305346 sc-eQTL 6.44e-01 -0.0409 0.0883 0.351 B_Memory L2
ENSG00000088035 ALG6 -79510 sc-eQTL 1.37e-03 -0.284 0.0876 0.351 B_Memory L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.14e-01 -0.0425 0.0842 0.351 B_Memory L2
ENSG00000125703 ATG4C 503933 sc-eQTL 4.15e-01 0.0652 0.0799 0.351 B_Memory L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 7.79e-02 -0.161 0.0909 0.351 B_Memory L2
ENSG00000162607 USP1 851768 sc-eQTL 6.37e-01 -0.0437 0.0924 0.351 B_Memory L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 9.16e-01 -0.00962 0.091 0.351 B_Memory L2
ENSG00000079739 PGM1 -305346 sc-eQTL 4.90e-01 -0.062 0.0897 0.348 B_Naive1 L2
ENSG00000088035 ALG6 -79510 sc-eQTL 2.44e-03 -0.271 0.0882 0.348 B_Naive1 L2
ENSG00000116641 DOCK7 599679 sc-eQTL 9.53e-01 0.00513 0.0864 0.348 B_Naive1 L2
ENSG00000125703 ATG4C 503933 sc-eQTL 9.95e-01 -0.000388 0.0665 0.348 B_Naive1 L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 1.91e-01 0.115 0.0879 0.348 B_Naive1 L2
ENSG00000162607 USP1 851768 sc-eQTL 8.52e-01 -0.0145 0.0776 0.348 B_Naive1 L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 7.34e-01 0.032 0.0941 0.348 B_Naive1 L2
ENSG00000079739 PGM1 -305346 sc-eQTL 8.94e-01 -0.0118 0.0884 0.35 B_Naive2 L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.93e-02 0.156 0.0916 0.35 B_Naive2 L2
ENSG00000116641 DOCK7 599679 sc-eQTL 9.64e-01 0.00401 0.0887 0.35 B_Naive2 L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.99e-01 -0.0108 0.0853 0.35 B_Naive2 L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 3.07e-01 -0.0946 0.0923 0.35 B_Naive2 L2
ENSG00000162607 USP1 851768 sc-eQTL 7.97e-01 0.0227 0.0881 0.35 B_Naive2 L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 5.90e-01 -0.0497 0.092 0.35 B_Naive2 L2
ENSG00000079739 PGM1 -305346 sc-eQTL 3.55e-02 0.187 0.0884 0.355 CD4_CTL L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.56e-02 -0.198 0.0935 0.355 CD4_CTL L2
ENSG00000116641 DOCK7 599679 sc-eQTL 3.13e-01 0.0834 0.0824 0.355 CD4_CTL L2
ENSG00000125703 ATG4C 503933 sc-eQTL 4.46e-01 0.0652 0.0854 0.355 CD4_CTL L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.73e-01 0.0656 0.0913 0.355 CD4_CTL L2
ENSG00000162607 USP1 851768 sc-eQTL 2.42e-01 0.102 0.0867 0.355 CD4_CTL L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 1.65e-01 0.121 0.0865 0.355 CD4_CTL L2
ENSG00000079739 PGM1 -305346 sc-eQTL 8.46e-01 -0.0141 0.0726 0.348 CD4_Naive L2
ENSG00000088035 ALG6 -79510 sc-eQTL 2.39e-01 0.0929 0.0786 0.348 CD4_Naive L2
ENSG00000116641 DOCK7 599679 sc-eQTL 7.02e-01 -0.0297 0.0775 0.348 CD4_Naive L2
ENSG00000125703 ATG4C 503933 sc-eQTL 3.65e-01 0.0621 0.0684 0.348 CD4_Naive L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.31e-01 0.0073 0.0837 0.348 CD4_Naive L2
ENSG00000162607 USP1 851768 sc-eQTL 5.45e-01 0.0387 0.0639 0.348 CD4_Naive L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 4.39e-01 0.0644 0.083 0.348 CD4_Naive L2
ENSG00000079739 PGM1 -305346 sc-eQTL 2.70e-01 -0.0827 0.0747 0.348 CD4_TCM L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.27e-01 -0.019 0.087 0.348 CD4_TCM L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.09e-01 0.0394 0.0771 0.348 CD4_TCM L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.31e-02 0.13 0.0745 0.348 CD4_TCM L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.07e-01 0.112 0.0882 0.348 CD4_TCM L2
ENSG00000162607 USP1 851768 sc-eQTL 4.63e-01 -0.0532 0.0725 0.348 CD4_TCM L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.70e-01 0.0769 0.0855 0.348 CD4_TCM L2
ENSG00000079739 PGM1 -305346 sc-eQTL 8.09e-01 0.0216 0.0894 0.348 CD4_TEM L2
ENSG00000088035 ALG6 -79510 sc-eQTL 4.04e-01 -0.0751 0.0897 0.348 CD4_TEM L2
ENSG00000116641 DOCK7 599679 sc-eQTL 9.74e-01 0.00287 0.0876 0.348 CD4_TEM L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.94e-01 -0.0114 0.0851 0.348 CD4_TEM L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.07e-01 -0.0103 0.0878 0.348 CD4_TEM L2
ENSG00000162607 USP1 851768 sc-eQTL 7.93e-02 0.146 0.0826 0.348 CD4_TEM L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 1.00e+00 -5.36e-05 0.091 0.348 CD4_TEM L2
ENSG00000079739 PGM1 -305346 sc-eQTL 9.42e-01 -0.00584 0.0808 0.348 CD8_CTL L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.33e-01 -0.0832 0.0857 0.348 CD8_CTL L2
ENSG00000116641 DOCK7 599679 sc-eQTL 1.59e-01 0.115 0.0811 0.348 CD8_CTL L2
ENSG00000125703 ATG4C 503933 sc-eQTL 1.30e-01 -0.131 0.0863 0.348 CD8_CTL L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.25e-01 0.072 0.0901 0.348 CD8_CTL L2
ENSG00000162607 USP1 851768 sc-eQTL 4.63e-01 -0.0593 0.0807 0.348 CD8_CTL L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 4.31e-01 0.0728 0.0923 0.348 CD8_CTL L2
ENSG00000079739 PGM1 -305346 sc-eQTL 5.36e-01 0.0505 0.0815 0.348 CD8_Naive L2
ENSG00000088035 ALG6 -79510 sc-eQTL 1.95e-01 0.109 0.0841 0.348 CD8_Naive L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.97e-01 0.0341 0.0873 0.348 CD8_Naive L2
ENSG00000125703 ATG4C 503933 sc-eQTL 4.13e-01 0.0686 0.0837 0.348 CD8_Naive L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.86e-01 0.0906 0.0846 0.348 CD8_Naive L2
ENSG00000162607 USP1 851768 sc-eQTL 4.50e-01 0.0542 0.0716 0.348 CD8_Naive L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 6.22e-01 0.0395 0.08 0.348 CD8_Naive L2
ENSG00000079739 PGM1 -305346 sc-eQTL 6.60e-01 -0.0395 0.0897 0.347 CD8_TCM L2
ENSG00000088035 ALG6 -79510 sc-eQTL 2.87e-02 0.198 0.0898 0.347 CD8_TCM L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.61e-01 0.0389 0.0886 0.347 CD8_TCM L2
ENSG00000125703 ATG4C 503933 sc-eQTL 1.79e-01 0.122 0.0903 0.347 CD8_TCM L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.38e-01 0.0684 0.088 0.347 CD8_TCM L2
ENSG00000162607 USP1 851768 sc-eQTL 8.45e-01 -0.0166 0.0848 0.347 CD8_TCM L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 5.47e-01 0.0542 0.0897 0.347 CD8_TCM L2
ENSG00000079739 PGM1 -305346 sc-eQTL 8.29e-03 -0.236 0.0886 0.356 CD8_TEM L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.85e-01 -0.0787 0.0903 0.356 CD8_TEM L2
ENSG00000116641 DOCK7 599679 sc-eQTL 7.76e-01 0.025 0.0877 0.356 CD8_TEM L2
ENSG00000125703 ATG4C 503933 sc-eQTL 6.99e-01 -0.0326 0.0843 0.356 CD8_TEM L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 8.47e-01 0.0176 0.0913 0.356 CD8_TEM L2
ENSG00000162607 USP1 851768 sc-eQTL 9.02e-01 0.0108 0.0871 0.356 CD8_TEM L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 4.52e-02 -0.177 0.0876 0.356 CD8_TEM L2
ENSG00000079739 PGM1 -305346 sc-eQTL 6.00e-02 -0.162 0.0855 0.351 MAIT L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.75e-02 -0.145 0.0847 0.351 MAIT L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.04e-01 -0.0425 0.0817 0.351 MAIT L2
ENSG00000125703 ATG4C 503933 sc-eQTL 2.82e-01 0.0926 0.086 0.351 MAIT L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 7.98e-01 -0.0221 0.0863 0.351 MAIT L2
ENSG00000162607 USP1 851768 sc-eQTL 3.29e-01 -0.0837 0.0855 0.351 MAIT L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.03e-01 -0.0915 0.0887 0.351 MAIT L2
ENSG00000079739 PGM1 -305346 sc-eQTL 6.94e-01 0.0338 0.0858 0.351 NK_CD56bright L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.42e-01 -0.0176 0.088 0.351 NK_CD56bright L2
ENSG00000116641 DOCK7 599679 sc-eQTL 9.63e-01 0.0035 0.0763 0.351 NK_CD56bright L2
ENSG00000125703 ATG4C 503933 sc-eQTL 5.37e-01 -0.0527 0.0851 0.351 NK_CD56bright L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.14e-01 0.11 0.0884 0.351 NK_CD56bright L2
ENSG00000162607 USP1 851768 sc-eQTL 1.29e-02 0.226 0.0901 0.351 NK_CD56bright L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.00e-01 -0.0907 0.0873 0.351 NK_CD56bright L2
ENSG00000079739 PGM1 -305346 sc-eQTL 4.51e-01 0.0524 0.0694 0.347 NK_CD56dim L2
ENSG00000088035 ALG6 -79510 sc-eQTL 4.87e-01 -0.0613 0.0881 0.347 NK_CD56dim L2
ENSG00000116641 DOCK7 599679 sc-eQTL 8.16e-01 -0.0178 0.0767 0.347 NK_CD56dim L2
ENSG00000125703 ATG4C 503933 sc-eQTL 9.96e-01 0.000366 0.0779 0.347 NK_CD56dim L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 1.33e-01 0.133 0.0882 0.347 NK_CD56dim L2
ENSG00000162607 USP1 851768 sc-eQTL 9.34e-01 -0.00709 0.086 0.347 NK_CD56dim L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 9.77e-01 -0.0028 0.0958 0.347 NK_CD56dim L2
ENSG00000079739 PGM1 -305346 sc-eQTL 7.28e-01 -0.0331 0.0952 0.347 NK_HLA L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.20e-01 0.0225 0.0987 0.347 NK_HLA L2
ENSG00000116641 DOCK7 599679 sc-eQTL 4.87e-01 -0.0525 0.0754 0.347 NK_HLA L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.51e-01 -0.0165 0.0878 0.347 NK_HLA L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.82e-01 0.0991 0.0919 0.347 NK_HLA L2
ENSG00000162607 USP1 851768 sc-eQTL 6.21e-01 0.0478 0.0964 0.347 NK_HLA L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 6.52e-01 -0.0396 0.0878 0.347 NK_HLA L2
ENSG00000079739 PGM1 -305346 sc-eQTL 9.21e-01 -0.00746 0.0755 0.347 NK_cytokine L2
ENSG00000088035 ALG6 -79510 sc-eQTL 6.55e-01 0.0382 0.0853 0.347 NK_cytokine L2
ENSG00000116641 DOCK7 599679 sc-eQTL 2.06e-02 0.182 0.0781 0.347 NK_cytokine L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.09e-01 0.0196 0.0809 0.347 NK_cytokine L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 8.32e-01 0.0178 0.0838 0.347 NK_cytokine L2
ENSG00000162607 USP1 851768 sc-eQTL 9.56e-01 -0.00487 0.0881 0.347 NK_cytokine L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 1.25e-01 -0.137 0.0888 0.347 NK_cytokine L2
ENSG00000079739 PGM1 -305346 sc-eQTL 8.77e-01 0.0175 0.113 0.326 PB L2
ENSG00000088035 ALG6 -79510 sc-eQTL 6.09e-01 -0.0611 0.119 0.326 PB L2
ENSG00000116641 DOCK7 599679 sc-eQTL 4.63e-01 -0.0937 0.127 0.326 PB L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.84e-01 0.0305 0.111 0.326 PB L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 2.56e-02 0.245 0.108 0.326 PB L2
ENSG00000162607 USP1 851768 sc-eQTL 3.77e-01 0.0975 0.11 0.326 PB L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 8.63e-01 -0.021 0.122 0.326 PB L2
ENSG00000079739 PGM1 -305346 sc-eQTL 5.05e-01 0.054 0.0809 0.346 Pro_T L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.52e-01 -0.0767 0.0822 0.346 Pro_T L2
ENSG00000116641 DOCK7 599679 sc-eQTL 2.42e-01 -0.0967 0.0824 0.346 Pro_T L2
ENSG00000125703 ATG4C 503933 sc-eQTL 9.07e-01 -0.00844 0.0724 0.346 Pro_T L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 8.21e-01 0.0164 0.0726 0.346 Pro_T L2
ENSG00000162607 USP1 851768 sc-eQTL 1.28e-01 0.0759 0.0496 0.346 Pro_T L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 3.92e-01 0.0723 0.0842 0.346 Pro_T L2
ENSG00000079739 PGM1 -305346 sc-eQTL 3.17e-01 0.0857 0.0855 0.348 Treg L2
ENSG00000088035 ALG6 -79510 sc-eQTL 1.49e-01 0.132 0.0912 0.348 Treg L2
ENSG00000116641 DOCK7 599679 sc-eQTL 5.84e-02 0.159 0.0834 0.348 Treg L2
ENSG00000125703 ATG4C 503933 sc-eQTL 8.07e-01 -0.0211 0.0859 0.348 Treg L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.01e-01 -0.0113 0.0899 0.348 Treg L2
ENSG00000162607 USP1 851768 sc-eQTL 5.55e-01 0.0514 0.0869 0.348 Treg L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 2.38e-01 0.101 0.0858 0.348 Treg L2
ENSG00000079739 PGM1 -305346 sc-eQTL 3.88e-01 0.0748 0.0864 0.359 cDC L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.57e-01 0.0809 0.0876 0.359 cDC L2
ENSG00000116641 DOCK7 599679 sc-eQTL 2.87e-01 0.0917 0.0859 0.359 cDC L2
ENSG00000125703 ATG4C 503933 sc-eQTL 5.11e-02 0.145 0.074 0.359 cDC L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.57e-01 0.00511 0.0948 0.359 cDC L2
ENSG00000162607 USP1 851768 sc-eQTL 2.68e-01 -0.0935 0.0842 0.359 cDC L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 7.41e-01 0.0252 0.0762 0.359 cDC L2
ENSG00000079739 PGM1 -305346 sc-eQTL 1.00e-01 -0.133 0.0807 0.348 cMono_IL1B L2
ENSG00000088035 ALG6 -79510 sc-eQTL 3.61e-01 -0.0743 0.0812 0.348 cMono_IL1B L2
ENSG00000116641 DOCK7 599679 sc-eQTL 8.07e-02 0.149 0.0851 0.348 cMono_IL1B L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.06e-01 0.0228 0.0603 0.348 cMono_IL1B L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.86e-01 0.0595 0.0853 0.348 cMono_IL1B L2
ENSG00000162607 USP1 851768 sc-eQTL 6.01e-02 -0.141 0.0747 0.348 cMono_IL1B L2
ENSG00000079739 PGM1 -305346 sc-eQTL 3.23e-01 0.0893 0.0901 0.348 cMono_S100A L2
ENSG00000088035 ALG6 -79510 sc-eQTL 2.31e-01 0.109 0.0912 0.348 cMono_S100A L2
ENSG00000116641 DOCK7 599679 sc-eQTL 7.16e-01 -0.0309 0.0848 0.348 cMono_S100A L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.39e-01 0.0245 0.0734 0.348 cMono_S100A L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 3.53e-01 0.077 0.0827 0.348 cMono_S100A L2
ENSG00000162607 USP1 851768 sc-eQTL 2.41e-01 0.0999 0.085 0.348 cMono_S100A L2
ENSG00000079739 PGM1 -305346 sc-eQTL 7.29e-01 -0.0328 0.0946 0.376 gdT L2
ENSG00000088035 ALG6 -79510 sc-eQTL 4.53e-02 -0.201 0.0995 0.376 gdT L2
ENSG00000116641 DOCK7 599679 sc-eQTL 6.62e-01 0.0434 0.0989 0.376 gdT L2
ENSG00000125703 ATG4C 503933 sc-eQTL 1.16e-02 -0.236 0.0925 0.376 gdT L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 9.17e-01 -0.0104 0.1 0.376 gdT L2
ENSG00000162607 USP1 851768 sc-eQTL 7.43e-01 0.0312 0.095 0.376 gdT L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 1.67e-01 -0.136 0.0981 0.376 gdT L2
ENSG00000079739 PGM1 -305346 sc-eQTL 3.42e-01 -0.0872 0.0916 0.342 intMono L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.91e-01 0.0118 0.0855 0.342 intMono L2
ENSG00000116641 DOCK7 599679 sc-eQTL 4.90e-01 -0.0603 0.0872 0.342 intMono L2
ENSG00000125703 ATG4C 503933 sc-eQTL 3.40e-01 -0.0795 0.0832 0.342 intMono L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 7.28e-01 0.032 0.0918 0.342 intMono L2
ENSG00000162607 USP1 851768 sc-eQTL 4.05e-01 0.0778 0.0932 0.342 intMono L2
ENSG00000079739 PGM1 -305346 sc-eQTL 5.54e-02 0.157 0.0817 0.346 ncMono L2
ENSG00000088035 ALG6 -79510 sc-eQTL 4.16e-01 -0.0736 0.0904 0.346 ncMono L2
ENSG00000116641 DOCK7 599679 sc-eQTL 1.01e-01 0.146 0.0885 0.346 ncMono L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.55e-01 -0.026 0.0832 0.346 ncMono L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.31e-01 -0.0687 0.087 0.346 ncMono L2
ENSG00000162607 USP1 851768 sc-eQTL 3.39e-01 -0.0851 0.0888 0.346 ncMono L2
ENSG00000079739 PGM1 -305346 sc-eQTL 9.20e-01 -0.00975 0.0971 0.364 pDC L2
ENSG00000088035 ALG6 -79510 sc-eQTL 8.20e-01 -0.0215 0.0946 0.364 pDC L2
ENSG00000116641 DOCK7 599679 sc-eQTL 2.55e-01 0.11 0.0962 0.364 pDC L2
ENSG00000125703 ATG4C 503933 sc-eQTL 7.81e-01 -0.0242 0.0866 0.364 pDC L2
ENSG00000142856 ITGB3BP -305656 sc-eQTL 7.78e-01 0.0275 0.0973 0.364 pDC L2
ENSG00000162607 USP1 851768 sc-eQTL 1.00e+00 8.98e-06 0.0991 0.364 pDC L2
ENSG00000203965 EFCAB7 -235307 sc-eQTL 2.72e-02 0.189 0.0847 0.364 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -305346 sc-eQTL 6.85e-01 -0.034 0.0835 0.348 B_Memory LOneK1K
ENSG00000088035 ALG6 -79510 sc-eQTL 5.23e-03 -0.256 0.0907 0.348 B_Memory LOneK1K
ENSG00000116641 DOCK7 599679 sc-eQTL 5.43e-01 -0.0488 0.0801 0.348 B_Memory LOneK1K
ENSG00000125703 ATG4C 503933 sc-eQTL 8.27e-01 -0.0142 0.0648 0.348 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -305656 sc-eQTL 3.57e-01 -0.0784 0.085 0.348 B_Memory LOneK1K
ENSG00000162607 USP1 851768 sc-eQTL 6.53e-01 -0.0372 0.0827 0.348 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -235307 sc-eQTL 9.53e-01 -0.00522 0.0888 0.348 B_Memory LOneK1K
ENSG00000079739 PGM1 -305346 sc-eQTL 5.42e-01 -0.0535 0.0875 0.348 B_Naive LOneK1K
ENSG00000088035 ALG6 -79510 sc-eQTL 8.94e-02 -0.153 0.0896 0.348 B_Naive LOneK1K
ENSG00000116641 DOCK7 599679 sc-eQTL 5.41e-01 0.0516 0.0841 0.348 B_Naive LOneK1K
ENSG00000125703 ATG4C 503933 sc-eQTL 8.35e-01 -0.0134 0.0642 0.348 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -305656 sc-eQTL 7.48e-01 0.0293 0.0908 0.348 B_Naive LOneK1K
ENSG00000162607 USP1 851768 sc-eQTL 6.03e-01 -0.0406 0.078 0.348 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -235307 sc-eQTL 9.29e-01 0.00811 0.0913 0.348 B_Naive LOneK1K
ENSG00000079739 PGM1 -305346 sc-eQTL 8.28e-01 -0.018 0.083 0.348 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -79510 sc-eQTL 7.19e-01 -0.0289 0.0804 0.348 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 599679 sc-eQTL 3.37e-01 0.0778 0.0808 0.348 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 503933 sc-eQTL 6.73e-01 0.0236 0.0559 0.348 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -305656 sc-eQTL 4.34e-01 0.0647 0.0827 0.348 CD14_Mono LOneK1K
ENSG00000162607 USP1 851768 sc-eQTL 5.58e-01 -0.0414 0.0707 0.348 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -305346 sc-eQTL 8.33e-01 0.0169 0.08 0.343 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -79510 sc-eQTL 5.08e-01 -0.0602 0.0908 0.343 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 599679 sc-eQTL 7.62e-01 0.0272 0.0899 0.343 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 503933 sc-eQTL 4.31e-01 -0.0604 0.0766 0.343 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -305656 sc-eQTL 8.34e-01 0.0187 0.089 0.343 CD16_Mono LOneK1K
ENSG00000162607 USP1 851768 sc-eQTL 6.04e-01 -0.0434 0.0836 0.343 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -305346 sc-eQTL 5.26e-01 0.043 0.0678 0.347 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -79510 sc-eQTL 9.30e-01 0.00721 0.0815 0.347 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 599679 sc-eQTL 1.87e-01 0.0961 0.0727 0.347 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 503933 sc-eQTL 8.88e-01 -0.0103 0.0728 0.347 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -305656 sc-eQTL 3.70e-01 0.0774 0.0862 0.347 NK_CD56dim LOneK1K
ENSG00000162607 USP1 851768 sc-eQTL 5.50e-01 -0.0469 0.0783 0.347 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -235307 sc-eQTL 4.07e-01 -0.079 0.0952 0.347 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -305346 eQTL 0.00264 -0.0534 0.0177 0.0 0.0 0.405

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -305346 1.28e-06 9.55e-07 3.26e-07 7e-07 3.47e-07 4.77e-07 1.32e-06 3.52e-07 1.29e-06 4.24e-07 1.48e-06 5.86e-07 2e-06 2.7e-07 5.73e-07 8.25e-07 8.3e-07 6.21e-07 7.73e-07 6.9e-07 6.17e-07 1.28e-06 9.28e-07 6.47e-07 2.05e-06 4.28e-07 8.34e-07 7.16e-07 1.28e-06 1.26e-06 5.77e-07 1.87e-07 2.02e-07 6.83e-07 5.39e-07 4.62e-07 5.12e-07 1.92e-07 3.34e-07 3.12e-07 3.05e-07 1.62e-06 5.94e-08 8.08e-08 2.49e-07 1.24e-07 2.33e-07 6.95e-08 1.47e-07