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Genes within 1Mb (chr1:63278407:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -315004 sc-eQTL 6.86e-01 -0.0307 0.0756 0.35 B L1
ENSG00000088035 ALG6 -89168 sc-eQTL 5.19e-03 -0.217 0.077 0.35 B L1
ENSG00000116641 DOCK7 590021 sc-eQTL 9.52e-01 -0.00476 0.0784 0.35 B L1
ENSG00000125703 ATG4C 494275 sc-eQTL 1.83e-01 -0.0725 0.0543 0.35 B L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 8.89e-01 0.0121 0.0867 0.35 B L1
ENSG00000162607 USP1 842110 sc-eQTL 4.68e-01 -0.0547 0.0752 0.35 B L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 8.06e-01 0.0218 0.0888 0.35 B L1
ENSG00000079739 PGM1 -315004 sc-eQTL 9.37e-01 0.00507 0.0645 0.35 CD4T L1
ENSG00000088035 ALG6 -89168 sc-eQTL 3.77e-01 0.0629 0.071 0.35 CD4T L1
ENSG00000116641 DOCK7 590021 sc-eQTL 6.50e-01 0.0327 0.072 0.35 CD4T L1
ENSG00000125703 ATG4C 494275 sc-eQTL 7.33e-02 0.104 0.0577 0.35 CD4T L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 6.84e-01 0.0337 0.0825 0.35 CD4T L1
ENSG00000162607 USP1 842110 sc-eQTL 6.54e-01 0.0253 0.0564 0.35 CD4T L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 4.53e-01 0.0556 0.074 0.35 CD4T L1
ENSG00000079739 PGM1 -315004 sc-eQTL 2.65e-01 -0.0795 0.0711 0.35 CD8T L1
ENSG00000088035 ALG6 -89168 sc-eQTL 5.09e-01 0.0519 0.0785 0.35 CD8T L1
ENSG00000116641 DOCK7 590021 sc-eQTL 5.48e-02 0.152 0.0789 0.35 CD8T L1
ENSG00000125703 ATG4C 494275 sc-eQTL 5.33e-01 -0.0472 0.0756 0.35 CD8T L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.14e-01 0.105 0.0843 0.35 CD8T L1
ENSG00000162607 USP1 842110 sc-eQTL 9.55e-01 0.00375 0.0659 0.35 CD8T L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 6.22e-01 0.0416 0.0843 0.35 CD8T L1
ENSG00000079739 PGM1 -315004 sc-eQTL 8.95e-01 0.0106 0.0805 0.345 DC L1
ENSG00000088035 ALG6 -89168 sc-eQTL 5.04e-01 0.0556 0.083 0.345 DC L1
ENSG00000116641 DOCK7 590021 sc-eQTL 2.67e-01 0.0944 0.0849 0.345 DC L1
ENSG00000125703 ATG4C 494275 sc-eQTL 5.25e-02 0.129 0.066 0.345 DC L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 5.95e-01 0.0495 0.0931 0.345 DC L1
ENSG00000162607 USP1 842110 sc-eQTL 2.61e-01 -0.0914 0.0811 0.345 DC L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 3.55e-01 0.075 0.0809 0.345 DC L1
ENSG00000079739 PGM1 -315004 sc-eQTL 8.41e-01 -0.0158 0.0785 0.35 Mono L1
ENSG00000088035 ALG6 -89168 sc-eQTL 7.26e-01 -0.0287 0.0819 0.35 Mono L1
ENSG00000116641 DOCK7 590021 sc-eQTL 2.57e-01 0.0898 0.079 0.35 Mono L1
ENSG00000125703 ATG4C 494275 sc-eQTL 8.68e-01 -0.0089 0.0535 0.35 Mono L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 3.63e-01 0.0769 0.0844 0.35 Mono L1
ENSG00000162607 USP1 842110 sc-eQTL 3.23e-01 -0.0687 0.0693 0.35 Mono L1
ENSG00000079739 PGM1 -315004 sc-eQTL 6.35e-01 0.0317 0.0667 0.348 NK L1
ENSG00000088035 ALG6 -89168 sc-eQTL 9.25e-01 -0.0074 0.0783 0.348 NK L1
ENSG00000116641 DOCK7 590021 sc-eQTL 1.53e-01 0.092 0.0642 0.348 NK L1
ENSG00000125703 ATG4C 494275 sc-eQTL 8.59e-01 -0.0123 0.0692 0.348 NK L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 1.81e-01 0.115 0.0857 0.348 NK L1
ENSG00000162607 USP1 842110 sc-eQTL 8.91e-01 -0.0105 0.0769 0.348 NK L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 3.21e-01 -0.0927 0.0932 0.348 NK L1
ENSG00000079739 PGM1 -315004 sc-eQTL 6.61e-01 -0.0332 0.0755 0.35 Other_T L1
ENSG00000088035 ALG6 -89168 sc-eQTL 4.03e-02 -0.155 0.0751 0.35 Other_T L1
ENSG00000116641 DOCK7 590021 sc-eQTL 9.42e-01 -0.00565 0.0775 0.35 Other_T L1
ENSG00000125703 ATG4C 494275 sc-eQTL 6.69e-01 -0.0287 0.067 0.35 Other_T L1
ENSG00000142856 ITGB3BP -315314 sc-eQTL 5.15e-01 -0.0388 0.0594 0.35 Other_T L1
ENSG00000162607 USP1 842110 sc-eQTL 5.14e-01 -0.0337 0.0515 0.35 Other_T L1
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.83e-01 -0.0505 0.0917 0.35 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -315004 sc-eQTL 9.96e-01 0.00046 0.101 0.365 B_Activated L2
ENSG00000088035 ALG6 -89168 sc-eQTL 8.78e-01 -0.0149 0.0968 0.365 B_Activated L2
ENSG00000116641 DOCK7 590021 sc-eQTL 3.23e-01 0.0891 0.0898 0.365 B_Activated L2
ENSG00000125703 ATG4C 494275 sc-eQTL 5.32e-01 -0.0592 0.0947 0.365 B_Activated L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.03e-01 0.118 0.0921 0.365 B_Activated L2
ENSG00000162607 USP1 842110 sc-eQTL 2.43e-02 0.225 0.0989 0.365 B_Activated L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.73e-01 -0.0495 0.0876 0.365 B_Activated L2
ENSG00000079739 PGM1 -315004 sc-eQTL 4.88e-01 -0.0631 0.0908 0.352 B_Intermediate L2
ENSG00000088035 ALG6 -89168 sc-eQTL 4.09e-01 -0.0763 0.0922 0.352 B_Intermediate L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.60e-01 -0.0389 0.0882 0.352 B_Intermediate L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.04e-01 -0.00902 0.0747 0.352 B_Intermediate L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.36e-01 -0.00718 0.0889 0.352 B_Intermediate L2
ENSG00000162607 USP1 842110 sc-eQTL 2.85e-01 -0.095 0.0886 0.352 B_Intermediate L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 7.18e-01 0.0318 0.0881 0.352 B_Intermediate L2
ENSG00000079739 PGM1 -315004 sc-eQTL 5.78e-01 -0.0493 0.0884 0.353 B_Memory L2
ENSG00000088035 ALG6 -89168 sc-eQTL 1.49e-03 -0.283 0.0878 0.353 B_Memory L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.76e-01 -0.0353 0.0844 0.353 B_Memory L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.38e-01 0.0769 0.08 0.353 B_Memory L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 6.09e-02 -0.171 0.091 0.353 B_Memory L2
ENSG00000162607 USP1 842110 sc-eQTL 5.40e-01 -0.0568 0.0925 0.353 B_Memory L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 9.71e-01 0.00328 0.0911 0.353 B_Memory L2
ENSG00000079739 PGM1 -315004 sc-eQTL 4.92e-01 -0.0619 0.09 0.35 B_Naive1 L2
ENSG00000088035 ALG6 -89168 sc-eQTL 2.84e-03 -0.267 0.0885 0.35 B_Naive1 L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.22e-01 -0.00848 0.0866 0.35 B_Naive1 L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.52e-01 -0.00399 0.0667 0.35 B_Naive1 L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 1.89e-01 0.116 0.0882 0.35 B_Naive1 L2
ENSG00000162607 USP1 842110 sc-eQTL 8.22e-01 -0.0176 0.0778 0.35 B_Naive1 L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 6.76e-01 0.0395 0.0944 0.35 B_Naive1 L2
ENSG00000079739 PGM1 -315004 sc-eQTL 8.46e-01 -0.0173 0.0886 0.352 B_Naive2 L2
ENSG00000088035 ALG6 -89168 sc-eQTL 1.02e-01 0.151 0.0918 0.352 B_Naive2 L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.08e-01 0.0103 0.0888 0.352 B_Naive2 L2
ENSG00000125703 ATG4C 494275 sc-eQTL 8.36e-01 -0.0177 0.0855 0.352 B_Naive2 L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.56e-01 -0.105 0.0924 0.352 B_Naive2 L2
ENSG00000162607 USP1 842110 sc-eQTL 9.04e-01 0.0107 0.0883 0.352 B_Naive2 L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.56e-01 -0.0544 0.0922 0.352 B_Naive2 L2
ENSG00000079739 PGM1 -315004 sc-eQTL 3.32e-02 0.19 0.0887 0.357 CD4_CTL L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.51e-02 -0.199 0.0938 0.357 CD4_CTL L2
ENSG00000116641 DOCK7 590021 sc-eQTL 3.16e-01 0.0831 0.0827 0.357 CD4_CTL L2
ENSG00000125703 ATG4C 494275 sc-eQTL 4.41e-01 0.0662 0.0857 0.357 CD4_CTL L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 4.94e-01 0.0628 0.0917 0.357 CD4_CTL L2
ENSG00000162607 USP1 842110 sc-eQTL 2.07e-01 0.11 0.087 0.357 CD4_CTL L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 1.64e-01 0.121 0.0868 0.357 CD4_CTL L2
ENSG00000079739 PGM1 -315004 sc-eQTL 8.33e-01 -0.0154 0.0727 0.35 CD4_Naive L2
ENSG00000088035 ALG6 -89168 sc-eQTL 2.26e-01 0.0955 0.0787 0.35 CD4_Naive L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.84e-01 -0.0316 0.0776 0.35 CD4_Naive L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.77e-01 0.0606 0.0685 0.35 CD4_Naive L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.55e-01 0.00472 0.0838 0.35 CD4_Naive L2
ENSG00000162607 USP1 842110 sc-eQTL 6.11e-01 0.0326 0.064 0.35 CD4_Naive L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.10e-01 0.0549 0.0832 0.35 CD4_Naive L2
ENSG00000079739 PGM1 -315004 sc-eQTL 2.73e-01 -0.0822 0.0748 0.35 CD4_TCM L2
ENSG00000088035 ALG6 -89168 sc-eQTL 8.53e-01 -0.0162 0.0871 0.35 CD4_TCM L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.38e-01 0.0364 0.0772 0.35 CD4_TCM L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.67e-02 0.133 0.0746 0.35 CD4_TCM L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.28e-01 0.107 0.0883 0.35 CD4_TCM L2
ENSG00000162607 USP1 842110 sc-eQTL 3.46e-01 -0.0685 0.0725 0.35 CD4_TCM L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 4.91e-01 0.0591 0.0857 0.35 CD4_TCM L2
ENSG00000079739 PGM1 -315004 sc-eQTL 8.02e-01 0.0225 0.0896 0.35 CD4_TEM L2
ENSG00000088035 ALG6 -89168 sc-eQTL 4.54e-01 -0.0674 0.0899 0.35 CD4_TEM L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.97e-01 0.000301 0.0878 0.35 CD4_TEM L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.80e-01 -0.0239 0.0853 0.35 CD4_TEM L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.80e-01 -0.00223 0.088 0.35 CD4_TEM L2
ENSG00000162607 USP1 842110 sc-eQTL 9.15e-02 0.14 0.0828 0.35 CD4_TEM L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 9.50e-01 -0.00573 0.0912 0.35 CD4_TEM L2
ENSG00000079739 PGM1 -315004 sc-eQTL 9.41e-01 0.00602 0.081 0.35 CD8_CTL L2
ENSG00000088035 ALG6 -89168 sc-eQTL 2.74e-01 -0.0942 0.0859 0.35 CD8_CTL L2
ENSG00000116641 DOCK7 590021 sc-eQTL 2.03e-01 0.104 0.0814 0.35 CD8_CTL L2
ENSG00000125703 ATG4C 494275 sc-eQTL 1.83e-01 -0.116 0.0866 0.35 CD8_CTL L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 4.57e-01 0.0673 0.0903 0.35 CD8_CTL L2
ENSG00000162607 USP1 842110 sc-eQTL 4.80e-01 -0.0572 0.0809 0.35 CD8_CTL L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 4.74e-01 0.0664 0.0926 0.35 CD8_CTL L2
ENSG00000079739 PGM1 -315004 sc-eQTL 5.36e-01 0.0507 0.0817 0.35 CD8_Naive L2
ENSG00000088035 ALG6 -89168 sc-eQTL 2.31e-01 0.101 0.0844 0.35 CD8_Naive L2
ENSG00000116641 DOCK7 590021 sc-eQTL 7.73e-01 0.0253 0.0875 0.35 CD8_Naive L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.80e-01 0.0738 0.0839 0.35 CD8_Naive L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.49e-01 0.098 0.0848 0.35 CD8_Naive L2
ENSG00000162607 USP1 842110 sc-eQTL 4.76e-01 0.0513 0.0718 0.35 CD8_Naive L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 6.44e-01 0.0371 0.0802 0.35 CD8_Naive L2
ENSG00000079739 PGM1 -315004 sc-eQTL 6.93e-01 -0.0356 0.0899 0.35 CD8_TCM L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.39e-02 0.192 0.09 0.35 CD8_TCM L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.83e-01 0.0363 0.0888 0.35 CD8_TCM L2
ENSG00000125703 ATG4C 494275 sc-eQTL 1.72e-01 0.124 0.0905 0.35 CD8_TCM L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 4.90e-01 0.061 0.0882 0.35 CD8_TCM L2
ENSG00000162607 USP1 842110 sc-eQTL 8.84e-01 -0.0124 0.085 0.35 CD8_TCM L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.91e-01 0.0484 0.09 0.35 CD8_TCM L2
ENSG00000079739 PGM1 -315004 sc-eQTL 6.89e-03 -0.243 0.0888 0.358 CD8_TEM L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.34e-01 -0.0878 0.0906 0.358 CD8_TEM L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.08e-01 0.0102 0.088 0.358 CD8_TEM L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.94e-01 -0.0222 0.0846 0.358 CD8_TEM L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 8.46e-01 0.0178 0.0916 0.358 CD8_TEM L2
ENSG00000162607 USP1 842110 sc-eQTL 9.60e-01 0.00437 0.0874 0.358 CD8_TEM L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 3.86e-02 -0.183 0.0879 0.358 CD8_TEM L2
ENSG00000079739 PGM1 -315004 sc-eQTL 5.11e-02 -0.168 0.0857 0.353 MAIT L2
ENSG00000088035 ALG6 -89168 sc-eQTL 1.08e-01 -0.137 0.0851 0.353 MAIT L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.77e-01 -0.0342 0.082 0.353 MAIT L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.21e-01 0.0858 0.0863 0.353 MAIT L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 8.44e-01 -0.017 0.0866 0.353 MAIT L2
ENSG00000162607 USP1 842110 sc-eQTL 3.25e-01 -0.0847 0.0858 0.353 MAIT L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 3.35e-01 -0.086 0.089 0.353 MAIT L2
ENSG00000079739 PGM1 -315004 sc-eQTL 6.19e-01 0.0429 0.086 0.353 NK_CD56bright L2
ENSG00000088035 ALG6 -89168 sc-eQTL 7.54e-01 -0.0276 0.0882 0.353 NK_CD56bright L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.35e-01 -0.00626 0.0764 0.353 NK_CD56bright L2
ENSG00000125703 ATG4C 494275 sc-eQTL 4.31e-01 -0.0672 0.0852 0.353 NK_CD56bright L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.18e-01 0.109 0.0886 0.353 NK_CD56bright L2
ENSG00000162607 USP1 842110 sc-eQTL 1.32e-02 0.226 0.0903 0.353 NK_CD56bright L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 2.26e-01 -0.106 0.0874 0.353 NK_CD56bright L2
ENSG00000079739 PGM1 -315004 sc-eQTL 5.47e-01 0.0419 0.0695 0.349 NK_CD56dim L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.69e-01 -0.0793 0.0881 0.349 NK_CD56dim L2
ENSG00000116641 DOCK7 590021 sc-eQTL 7.28e-01 -0.0267 0.0768 0.349 NK_CD56dim L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.54e-01 0.00455 0.078 0.349 NK_CD56dim L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 1.13e-01 0.141 0.0882 0.349 NK_CD56dim L2
ENSG00000162607 USP1 842110 sc-eQTL 8.25e-01 -0.019 0.0861 0.349 NK_CD56dim L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 9.51e-01 0.00588 0.0959 0.349 NK_CD56dim L2
ENSG00000079739 PGM1 -315004 sc-eQTL 7.50e-01 -0.0303 0.0952 0.349 NK_HLA L2
ENSG00000088035 ALG6 -89168 sc-eQTL 8.07e-01 0.0241 0.0987 0.349 NK_HLA L2
ENSG00000116641 DOCK7 590021 sc-eQTL 5.04e-01 -0.0505 0.0754 0.349 NK_HLA L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.61e-01 -0.00427 0.0878 0.349 NK_HLA L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 1.91e-01 0.12 0.0918 0.349 NK_HLA L2
ENSG00000162607 USP1 842110 sc-eQTL 6.35e-01 0.0459 0.0964 0.349 NK_HLA L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 6.90e-01 -0.035 0.0878 0.349 NK_HLA L2
ENSG00000079739 PGM1 -315004 sc-eQTL 9.83e-01 -0.00162 0.0757 0.349 NK_cytokine L2
ENSG00000088035 ALG6 -89168 sc-eQTL 6.45e-01 0.0394 0.0855 0.349 NK_cytokine L2
ENSG00000116641 DOCK7 590021 sc-eQTL 1.85e-02 0.186 0.0782 0.349 NK_cytokine L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.99e-01 0.0206 0.081 0.349 NK_cytokine L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 7.51e-01 0.0267 0.0839 0.349 NK_cytokine L2
ENSG00000162607 USP1 842110 sc-eQTL 9.00e-01 -0.0111 0.0882 0.349 NK_cytokine L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 1.85e-01 -0.118 0.089 0.349 NK_cytokine L2
ENSG00000079739 PGM1 -315004 sc-eQTL 8.90e-01 -0.0157 0.113 0.33 PB L2
ENSG00000088035 ALG6 -89168 sc-eQTL 6.86e-01 -0.048 0.118 0.33 PB L2
ENSG00000116641 DOCK7 590021 sc-eQTL 3.52e-01 -0.118 0.126 0.33 PB L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.93e-01 0.0291 0.11 0.33 PB L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 3.19e-02 0.234 0.108 0.33 PB L2
ENSG00000162607 USP1 842110 sc-eQTL 4.99e-01 0.0742 0.109 0.33 PB L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 6.69e-01 -0.0517 0.121 0.33 PB L2
ENSG00000079739 PGM1 -315004 sc-eQTL 3.90e-01 0.07 0.0813 0.348 Pro_T L2
ENSG00000088035 ALG6 -89168 sc-eQTL 4.53e-01 -0.0622 0.0827 0.348 Pro_T L2
ENSG00000116641 DOCK7 590021 sc-eQTL 2.58e-01 -0.094 0.0829 0.348 Pro_T L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.36e-01 -0.00586 0.0728 0.348 Pro_T L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.54e-01 0.00424 0.073 0.348 Pro_T L2
ENSG00000162607 USP1 842110 sc-eQTL 1.46e-01 0.0728 0.0499 0.348 Pro_T L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 2.97e-01 0.0885 0.0846 0.348 Pro_T L2
ENSG00000079739 PGM1 -315004 sc-eQTL 3.45e-01 0.0811 0.0857 0.35 Treg L2
ENSG00000088035 ALG6 -89168 sc-eQTL 1.49e-01 0.132 0.0914 0.35 Treg L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.27e-02 0.156 0.0836 0.35 Treg L2
ENSG00000125703 ATG4C 494275 sc-eQTL 8.15e-01 -0.0202 0.0861 0.35 Treg L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 8.58e-01 -0.0161 0.0901 0.35 Treg L2
ENSG00000162607 USP1 842110 sc-eQTL 5.37e-01 0.0539 0.0871 0.35 Treg L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 1.93e-01 0.112 0.0859 0.35 Treg L2
ENSG00000079739 PGM1 -315004 sc-eQTL 4.12e-01 0.0716 0.087 0.361 cDC L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.16e-01 0.0886 0.0881 0.361 cDC L2
ENSG00000116641 DOCK7 590021 sc-eQTL 2.52e-01 0.0993 0.0864 0.361 cDC L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.92e-02 0.155 0.0744 0.361 cDC L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.89e-01 -0.00126 0.0954 0.361 cDC L2
ENSG00000162607 USP1 842110 sc-eQTL 3.84e-01 -0.074 0.0848 0.361 cDC L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 7.21e-01 0.0275 0.0767 0.361 cDC L2
ENSG00000079739 PGM1 -315004 sc-eQTL 1.57e-01 -0.115 0.0812 0.35 cMono_IL1B L2
ENSG00000088035 ALG6 -89168 sc-eQTL 4.04e-01 -0.0683 0.0816 0.35 cMono_IL1B L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.99e-02 0.156 0.0855 0.35 cMono_IL1B L2
ENSG00000125703 ATG4C 494275 sc-eQTL 7.52e-01 0.0191 0.0606 0.35 cMono_IL1B L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 5.15e-01 0.0559 0.0857 0.35 cMono_IL1B L2
ENSG00000162607 USP1 842110 sc-eQTL 6.34e-02 -0.14 0.0751 0.35 cMono_IL1B L2
ENSG00000079739 PGM1 -315004 sc-eQTL 3.09e-01 0.0923 0.0904 0.35 cMono_S100A L2
ENSG00000088035 ALG6 -89168 sc-eQTL 2.11e-01 0.115 0.0915 0.35 cMono_S100A L2
ENSG00000116641 DOCK7 590021 sc-eQTL 9.52e-01 -0.00509 0.0852 0.35 cMono_S100A L2
ENSG00000125703 ATG4C 494275 sc-eQTL 8.50e-01 0.0139 0.0737 0.35 cMono_S100A L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 3.19e-01 0.0829 0.083 0.35 cMono_S100A L2
ENSG00000162607 USP1 842110 sc-eQTL 3.48e-01 0.0804 0.0855 0.35 cMono_S100A L2
ENSG00000079739 PGM1 -315004 sc-eQTL 6.22e-01 -0.0468 0.0948 0.379 gdT L2
ENSG00000088035 ALG6 -89168 sc-eQTL 4.04e-02 -0.206 0.0997 0.379 gdT L2
ENSG00000116641 DOCK7 590021 sc-eQTL 6.96e-01 0.0388 0.0992 0.379 gdT L2
ENSG00000125703 ATG4C 494275 sc-eQTL 1.84e-02 -0.222 0.093 0.379 gdT L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.59e-01 -0.00517 0.101 0.379 gdT L2
ENSG00000162607 USP1 842110 sc-eQTL 7.15e-01 0.0349 0.0952 0.379 gdT L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 1.15e-01 -0.156 0.0982 0.379 gdT L2
ENSG00000079739 PGM1 -315004 sc-eQTL 3.56e-01 -0.0852 0.0921 0.344 intMono L2
ENSG00000088035 ALG6 -89168 sc-eQTL 9.79e-01 0.00225 0.0859 0.344 intMono L2
ENSG00000116641 DOCK7 590021 sc-eQTL 5.34e-01 -0.0546 0.0877 0.344 intMono L2
ENSG00000125703 ATG4C 494275 sc-eQTL 3.48e-01 -0.0786 0.0836 0.344 intMono L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 7.98e-01 0.0236 0.0923 0.344 intMono L2
ENSG00000162607 USP1 842110 sc-eQTL 4.57e-01 0.0698 0.0937 0.344 intMono L2
ENSG00000079739 PGM1 -315004 sc-eQTL 4.34e-02 0.167 0.0819 0.348 ncMono L2
ENSG00000088035 ALG6 -89168 sc-eQTL 3.35e-01 -0.0878 0.0908 0.348 ncMono L2
ENSG00000116641 DOCK7 590021 sc-eQTL 1.04e-01 0.145 0.0889 0.348 ncMono L2
ENSG00000125703 ATG4C 494275 sc-eQTL 8.46e-01 -0.0162 0.0836 0.348 ncMono L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 4.68e-01 -0.0636 0.0874 0.348 ncMono L2
ENSG00000162607 USP1 842110 sc-eQTL 4.53e-01 -0.0671 0.0893 0.348 ncMono L2
ENSG00000079739 PGM1 -315004 sc-eQTL 9.42e-01 0.00706 0.0976 0.367 pDC L2
ENSG00000088035 ALG6 -89168 sc-eQTL 8.52e-01 -0.0178 0.0951 0.367 pDC L2
ENSG00000116641 DOCK7 590021 sc-eQTL 2.54e-01 0.111 0.0967 0.367 pDC L2
ENSG00000125703 ATG4C 494275 sc-eQTL 9.88e-01 -0.00129 0.0871 0.367 pDC L2
ENSG00000142856 ITGB3BP -315314 sc-eQTL 9.31e-01 0.00845 0.0978 0.367 pDC L2
ENSG00000162607 USP1 842110 sc-eQTL 9.62e-01 -0.0047 0.0997 0.367 pDC L2
ENSG00000203965 EFCAB7 -244965 sc-eQTL 3.42e-02 0.182 0.0853 0.367 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -315004 sc-eQTL 7.32e-01 -0.0287 0.0837 0.35 B_Memory LOneK1K
ENSG00000088035 ALG6 -89168 sc-eQTL 6.94e-03 -0.248 0.091 0.35 B_Memory LOneK1K
ENSG00000116641 DOCK7 590021 sc-eQTL 6.39e-01 -0.0377 0.0803 0.35 B_Memory LOneK1K
ENSG00000125703 ATG4C 494275 sc-eQTL 9.87e-01 -0.00109 0.0649 0.35 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -315314 sc-eQTL 3.13e-01 -0.0861 0.0851 0.35 B_Memory LOneK1K
ENSG00000162607 USP1 842110 sc-eQTL 6.49e-01 -0.0378 0.0828 0.35 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -244965 sc-eQTL 9.60e-01 0.00446 0.0889 0.35 B_Memory LOneK1K
ENSG00000079739 PGM1 -315004 sc-eQTL 5.16e-01 -0.0571 0.0877 0.35 B_Naive LOneK1K
ENSG00000088035 ALG6 -89168 sc-eQTL 9.12e-02 -0.152 0.0898 0.35 B_Naive LOneK1K
ENSG00000116641 DOCK7 590021 sc-eQTL 6.06e-01 0.0435 0.0843 0.35 B_Naive LOneK1K
ENSG00000125703 ATG4C 494275 sc-eQTL 7.72e-01 -0.0187 0.0644 0.35 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -315314 sc-eQTL 7.77e-01 0.0258 0.091 0.35 B_Naive LOneK1K
ENSG00000162607 USP1 842110 sc-eQTL 5.29e-01 -0.0492 0.0781 0.35 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -244965 sc-eQTL 8.93e-01 0.0123 0.0915 0.35 B_Naive LOneK1K
ENSG00000079739 PGM1 -315004 sc-eQTL 9.64e-01 -0.00376 0.0834 0.35 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -89168 sc-eQTL 7.94e-01 -0.0212 0.0807 0.35 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 590021 sc-eQTL 2.50e-01 0.0936 0.0811 0.35 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 494275 sc-eQTL 7.68e-01 0.0166 0.0562 0.35 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -315314 sc-eQTL 4.30e-01 0.0657 0.083 0.35 CD14_Mono LOneK1K
ENSG00000162607 USP1 842110 sc-eQTL 5.04e-01 -0.0475 0.071 0.35 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -315004 sc-eQTL 7.73e-01 0.0233 0.0804 0.345 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -89168 sc-eQTL 4.09e-01 -0.0755 0.0912 0.345 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 590021 sc-eQTL 7.18e-01 0.0327 0.0904 0.345 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 494275 sc-eQTL 4.71e-01 -0.0556 0.077 0.345 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -315314 sc-eQTL 8.41e-01 0.018 0.0895 0.345 CD16_Mono LOneK1K
ENSG00000162607 USP1 842110 sc-eQTL 6.77e-01 -0.035 0.084 0.345 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -315004 sc-eQTL 5.43e-01 0.0413 0.0679 0.349 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -89168 sc-eQTL 9.62e-01 -0.00388 0.0816 0.349 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 590021 sc-eQTL 2.18e-01 0.0899 0.0728 0.349 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 494275 sc-eQTL 9.98e-01 -0.00021 0.0729 0.349 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -315314 sc-eQTL 2.91e-01 0.0913 0.0862 0.349 NK_CD56dim LOneK1K
ENSG00000162607 USP1 842110 sc-eQTL 4.74e-01 -0.0562 0.0784 0.349 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -244965 sc-eQTL 5.10e-01 -0.0629 0.0954 0.349 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -315004 eQTL 0.0022 -0.0547 0.0178 0.0 0.0 0.404

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -315004 1.3e-06 9.44e-07 2.89e-07 5.92e-07 2.33e-07 4.35e-07 1.02e-06 3.22e-07 1.14e-06 3.66e-07 1.38e-06 6.02e-07 1.63e-06 2.55e-07 4.28e-07 6.89e-07 7.72e-07 5.8e-07 4.82e-07 6.2e-07 3.49e-07 9.58e-07 8.03e-07 5.75e-07 1.94e-06 2.98e-07 6.18e-07 5.78e-07 9.39e-07 1.09e-06 5.47e-07 4.91e-08 1.76e-07 5.28e-07 4.22e-07 3.92e-07 3.65e-07 1.36e-07 1.51e-07 4.28e-08 2.17e-07 1.4e-06 6.28e-08 2.61e-08 1.64e-07 8.76e-08 1.91e-07 8.49e-08 8e-08