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Genes within 1Mb (chr1:63261975:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -331436 sc-eQTL 4.52e-01 -0.0558 0.074 0.562 B L1
ENSG00000088035 ALG6 -105600 sc-eQTL 1.13e-01 -0.121 0.0763 0.562 B L1
ENSG00000116641 DOCK7 573589 sc-eQTL 3.94e-01 0.0654 0.0766 0.562 B L1
ENSG00000125703 ATG4C 477843 sc-eQTL 9.54e-01 -0.00307 0.0533 0.562 B L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 5.09e-01 0.0561 0.0848 0.562 B L1
ENSG00000162607 USP1 825678 sc-eQTL 6.15e-01 0.037 0.0736 0.562 B L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 2.84e-01 0.0931 0.0867 0.562 B L1
ENSG00000079739 PGM1 -331436 sc-eQTL 3.07e-01 -0.0646 0.0631 0.562 CD4T L1
ENSG00000088035 ALG6 -105600 sc-eQTL 9.08e-01 0.00808 0.0698 0.562 CD4T L1
ENSG00000116641 DOCK7 573589 sc-eQTL 2.39e-01 0.0832 0.0705 0.562 CD4T L1
ENSG00000125703 ATG4C 477843 sc-eQTL 4.78e-01 0.0405 0.057 0.562 CD4T L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 6.10e-01 0.0414 0.081 0.562 CD4T L1
ENSG00000162607 USP1 825678 sc-eQTL 5.76e-01 0.031 0.0553 0.562 CD4T L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 6.54e-01 0.0326 0.0727 0.562 CD4T L1
ENSG00000079739 PGM1 -331436 sc-eQTL 8.47e-01 0.0134 0.0693 0.562 CD8T L1
ENSG00000088035 ALG6 -105600 sc-eQTL 5.84e-01 -0.0419 0.0764 0.562 CD8T L1
ENSG00000116641 DOCK7 573589 sc-eQTL 6.39e-02 0.143 0.0768 0.562 CD8T L1
ENSG00000125703 ATG4C 477843 sc-eQTL 7.91e-01 -0.0195 0.0735 0.562 CD8T L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.42e-01 0.0962 0.082 0.562 CD8T L1
ENSG00000162607 USP1 825678 sc-eQTL 9.51e-01 0.00394 0.0641 0.562 CD8T L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.56e-01 -0.0149 0.082 0.562 CD8T L1
ENSG00000079739 PGM1 -331436 sc-eQTL 9.95e-02 0.126 0.0763 0.561 DC L1
ENSG00000088035 ALG6 -105600 sc-eQTL 9.86e-01 -0.00144 0.0793 0.561 DC L1
ENSG00000116641 DOCK7 573589 sc-eQTL 3.04e-02 0.175 0.0803 0.561 DC L1
ENSG00000125703 ATG4C 477843 sc-eQTL 8.07e-02 0.111 0.0631 0.561 DC L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 4.97e-01 0.0605 0.0888 0.561 DC L1
ENSG00000162607 USP1 825678 sc-eQTL 8.27e-01 -0.017 0.0776 0.561 DC L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.53e-01 0.046 0.0773 0.561 DC L1
ENSG00000079739 PGM1 -331436 sc-eQTL 7.68e-01 0.023 0.0778 0.562 Mono L1
ENSG00000088035 ALG6 -105600 sc-eQTL 9.80e-01 -0.00207 0.0812 0.562 Mono L1
ENSG00000116641 DOCK7 573589 sc-eQTL 1.32e-01 0.118 0.0781 0.562 Mono L1
ENSG00000125703 ATG4C 477843 sc-eQTL 4.48e-01 0.0403 0.053 0.562 Mono L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.24e-01 0.129 0.0834 0.562 Mono L1
ENSG00000162607 USP1 825678 sc-eQTL 9.43e-01 -0.00489 0.0689 0.562 Mono L1
ENSG00000079739 PGM1 -331436 sc-eQTL 6.87e-02 0.117 0.0639 0.562 NK L1
ENSG00000088035 ALG6 -105600 sc-eQTL 7.26e-01 -0.0265 0.0755 0.562 NK L1
ENSG00000116641 DOCK7 573589 sc-eQTL 8.95e-01 -0.00824 0.0622 0.562 NK L1
ENSG00000125703 ATG4C 477843 sc-eQTL 7.93e-01 0.0175 0.0668 0.562 NK L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 3.19e-01 0.0829 0.0829 0.562 NK L1
ENSG00000162607 USP1 825678 sc-eQTL 6.79e-01 0.0307 0.0742 0.562 NK L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.29e-01 -0.0195 0.0902 0.562 NK L1
ENSG00000079739 PGM1 -331436 sc-eQTL 1.98e-01 -0.096 0.0743 0.562 Other_T L1
ENSG00000088035 ALG6 -105600 sc-eQTL 9.74e-02 -0.124 0.0745 0.562 Other_T L1
ENSG00000116641 DOCK7 573589 sc-eQTL 5.96e-01 -0.0406 0.0765 0.562 Other_T L1
ENSG00000125703 ATG4C 477843 sc-eQTL 8.98e-01 0.00849 0.0662 0.562 Other_T L1
ENSG00000142856 ITGB3BP -331746 sc-eQTL 7.55e-01 -0.0184 0.0587 0.562 Other_T L1
ENSG00000162607 USP1 825678 sc-eQTL 8.05e-01 -0.0126 0.0509 0.562 Other_T L1
ENSG00000203965 EFCAB7 -261397 sc-eQTL 1.32e-01 -0.136 0.0902 0.562 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -331436 sc-eQTL 7.36e-01 0.0322 0.0955 0.561 B_Activated L2
ENSG00000088035 ALG6 -105600 sc-eQTL 7.64e-01 0.0276 0.0915 0.561 B_Activated L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.74e-01 -0.036 0.0852 0.561 B_Activated L2
ENSG00000125703 ATG4C 477843 sc-eQTL 9.53e-01 -0.00528 0.0897 0.561 B_Activated L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 6.78e-02 0.159 0.0868 0.561 B_Activated L2
ENSG00000162607 USP1 825678 sc-eQTL 3.16e-01 0.0952 0.0947 0.561 B_Activated L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 1.71e-01 0.113 0.0825 0.561 B_Activated L2
ENSG00000079739 PGM1 -331436 sc-eQTL 2.87e-01 -0.0942 0.0882 0.564 B_Intermediate L2
ENSG00000088035 ALG6 -105600 sc-eQTL 7.90e-01 0.0239 0.0898 0.564 B_Intermediate L2
ENSG00000116641 DOCK7 573589 sc-eQTL 4.64e-01 -0.0629 0.0857 0.564 B_Intermediate L2
ENSG00000125703 ATG4C 477843 sc-eQTL 3.04e-01 0.0747 0.0725 0.564 B_Intermediate L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 6.08e-01 0.0444 0.0865 0.564 B_Intermediate L2
ENSG00000162607 USP1 825678 sc-eQTL 5.19e-01 0.0558 0.0863 0.564 B_Intermediate L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 4.45e-01 -0.0655 0.0856 0.564 B_Intermediate L2
ENSG00000079739 PGM1 -331436 sc-eQTL 5.54e-01 -0.0506 0.0855 0.567 B_Memory L2
ENSG00000088035 ALG6 -105600 sc-eQTL 7.27e-03 -0.232 0.0855 0.567 B_Memory L2
ENSG00000116641 DOCK7 573589 sc-eQTL 7.54e-01 0.0256 0.0816 0.567 B_Memory L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.27e-01 0.0616 0.0774 0.567 B_Memory L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.22e-01 0.108 0.0884 0.567 B_Memory L2
ENSG00000162607 USP1 825678 sc-eQTL 1.61e-01 -0.125 0.0891 0.567 B_Memory L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 2.03e-01 0.112 0.0878 0.567 B_Memory L2
ENSG00000079739 PGM1 -331436 sc-eQTL 5.80e-01 -0.0492 0.0888 0.562 B_Naive1 L2
ENSG00000088035 ALG6 -105600 sc-eQTL 3.33e-01 -0.0864 0.089 0.562 B_Naive1 L2
ENSG00000116641 DOCK7 573589 sc-eQTL 5.29e-01 0.0539 0.0854 0.562 B_Naive1 L2
ENSG00000125703 ATG4C 477843 sc-eQTL 2.02e-01 0.084 0.0656 0.562 B_Naive1 L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.91e-01 0.0921 0.0871 0.562 B_Naive1 L2
ENSG00000162607 USP1 825678 sc-eQTL 7.03e-01 0.0293 0.0768 0.562 B_Naive1 L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 4.56e-01 0.0694 0.093 0.562 B_Naive1 L2
ENSG00000079739 PGM1 -331436 sc-eQTL 6.57e-01 -0.0386 0.0869 0.564 B_Naive2 L2
ENSG00000088035 ALG6 -105600 sc-eQTL 8.52e-01 0.017 0.0907 0.564 B_Naive2 L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.01e-01 0.0457 0.0871 0.564 B_Naive2 L2
ENSG00000125703 ATG4C 477843 sc-eQTL 7.94e-01 0.022 0.0839 0.564 B_Naive2 L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 6.65e-01 -0.0394 0.091 0.564 B_Naive2 L2
ENSG00000162607 USP1 825678 sc-eQTL 5.57e-01 0.0509 0.0866 0.564 B_Naive2 L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 6.34e-01 -0.0431 0.0905 0.564 B_Naive2 L2
ENSG00000079739 PGM1 -331436 sc-eQTL 1.38e-01 0.129 0.0867 0.561 CD4_CTL L2
ENSG00000088035 ALG6 -105600 sc-eQTL 9.21e-01 -0.00915 0.0922 0.561 CD4_CTL L2
ENSG00000116641 DOCK7 573589 sc-eQTL 5.03e-01 -0.054 0.0805 0.561 CD4_CTL L2
ENSG00000125703 ATG4C 477843 sc-eQTL 1.53e-01 0.119 0.083 0.561 CD4_CTL L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 5.50e-01 -0.0533 0.0891 0.561 CD4_CTL L2
ENSG00000162607 USP1 825678 sc-eQTL 1.33e-01 0.127 0.0844 0.561 CD4_CTL L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.36e-01 0.0175 0.0848 0.561 CD4_CTL L2
ENSG00000079739 PGM1 -331436 sc-eQTL 1.23e-01 -0.11 0.0709 0.562 CD4_Naive L2
ENSG00000088035 ALG6 -105600 sc-eQTL 3.54e-01 0.0717 0.0773 0.562 CD4_Naive L2
ENSG00000116641 DOCK7 573589 sc-eQTL 2.01e-01 0.0972 0.0758 0.562 CD4_Naive L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.25e-01 0.0537 0.0672 0.562 CD4_Naive L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 5.42e-01 0.0502 0.0822 0.562 CD4_Naive L2
ENSG00000162607 USP1 825678 sc-eQTL 3.49e-01 0.0589 0.0627 0.562 CD4_Naive L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 1.77e-01 0.11 0.0813 0.562 CD4_Naive L2
ENSG00000079739 PGM1 -331436 sc-eQTL 3.48e-01 -0.0687 0.073 0.562 CD4_TCM L2
ENSG00000088035 ALG6 -105600 sc-eQTL 8.93e-01 -0.0115 0.0849 0.562 CD4_TCM L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.98e-01 0.0292 0.0752 0.562 CD4_TCM L2
ENSG00000125703 ATG4C 477843 sc-eQTL 8.85e-01 0.0106 0.0732 0.562 CD4_TCM L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 6.00e-01 0.0453 0.0863 0.562 CD4_TCM L2
ENSG00000162607 USP1 825678 sc-eQTL 5.55e-01 -0.0418 0.0707 0.562 CD4_TCM L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.52e-01 0.0497 0.0835 0.562 CD4_TCM L2
ENSG00000079739 PGM1 -331436 sc-eQTL 2.19e-01 0.107 0.0867 0.562 CD4_TEM L2
ENSG00000088035 ALG6 -105600 sc-eQTL 2.21e-01 -0.107 0.0872 0.562 CD4_TEM L2
ENSG00000116641 DOCK7 573589 sc-eQTL 4.99e-01 0.0576 0.0852 0.562 CD4_TEM L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.55e-01 -0.062 0.0827 0.562 CD4_TEM L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 7.46e-01 -0.0277 0.0855 0.562 CD4_TEM L2
ENSG00000162607 USP1 825678 sc-eQTL 4.36e-01 0.0632 0.0809 0.562 CD4_TEM L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 2.68e-01 -0.098 0.0883 0.562 CD4_TEM L2
ENSG00000079739 PGM1 -331436 sc-eQTL 2.08e-01 0.0995 0.0788 0.562 CD8_CTL L2
ENSG00000088035 ALG6 -105600 sc-eQTL 4.19e-01 -0.0679 0.0839 0.562 CD8_CTL L2
ENSG00000116641 DOCK7 573589 sc-eQTL 2.06e-01 0.101 0.0795 0.562 CD8_CTL L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.50e-01 -0.0642 0.0848 0.562 CD8_CTL L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 7.28e-01 -0.0307 0.0883 0.562 CD8_CTL L2
ENSG00000162607 USP1 825678 sc-eQTL 3.32e-01 -0.0767 0.0789 0.562 CD8_CTL L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 3.59e-01 -0.0829 0.0903 0.562 CD8_CTL L2
ENSG00000079739 PGM1 -331436 sc-eQTL 7.98e-01 0.0206 0.0801 0.562 CD8_Naive L2
ENSG00000088035 ALG6 -105600 sc-eQTL 7.76e-01 -0.0236 0.0829 0.562 CD8_Naive L2
ENSG00000116641 DOCK7 573589 sc-eQTL 1.16e-01 0.134 0.0852 0.562 CD8_Naive L2
ENSG00000125703 ATG4C 477843 sc-eQTL 3.58e-01 0.0756 0.0821 0.562 CD8_Naive L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.49e-01 0.12 0.0829 0.562 CD8_Naive L2
ENSG00000162607 USP1 825678 sc-eQTL 2.73e-01 0.0772 0.0702 0.562 CD8_Naive L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 1.18e-01 0.122 0.0781 0.562 CD8_Naive L2
ENSG00000079739 PGM1 -331436 sc-eQTL 8.84e-01 0.0132 0.0906 0.569 CD8_TCM L2
ENSG00000088035 ALG6 -105600 sc-eQTL 5.06e-03 0.255 0.0899 0.569 CD8_TCM L2
ENSG00000116641 DOCK7 573589 sc-eQTL 3.73e-01 -0.0798 0.0893 0.569 CD8_TCM L2
ENSG00000125703 ATG4C 477843 sc-eQTL 1.33e-01 -0.137 0.091 0.569 CD8_TCM L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.78e-01 0.12 0.0886 0.569 CD8_TCM L2
ENSG00000162607 USP1 825678 sc-eQTL 3.30e-01 0.0835 0.0854 0.569 CD8_TCM L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.34e-01 -0.0191 0.0907 0.569 CD8_TCM L2
ENSG00000079739 PGM1 -331436 sc-eQTL 6.24e-01 -0.0437 0.0891 0.564 CD8_TEM L2
ENSG00000088035 ALG6 -105600 sc-eQTL 4.67e-01 -0.065 0.0893 0.564 CD8_TEM L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.73e-01 0.0366 0.0867 0.564 CD8_TEM L2
ENSG00000125703 ATG4C 477843 sc-eQTL 9.18e-01 0.00861 0.0834 0.564 CD8_TEM L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 9.08e-01 -0.0105 0.0902 0.564 CD8_TEM L2
ENSG00000162607 USP1 825678 sc-eQTL 6.66e-01 -0.0372 0.0861 0.564 CD8_TEM L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 1.71e-01 -0.12 0.0871 0.564 CD8_TEM L2
ENSG00000079739 PGM1 -331436 sc-eQTL 6.73e-01 -0.0356 0.0841 0.565 MAIT L2
ENSG00000088035 ALG6 -105600 sc-eQTL 6.20e-01 -0.0413 0.0832 0.565 MAIT L2
ENSG00000116641 DOCK7 573589 sc-eQTL 8.75e-01 -0.0126 0.0798 0.565 MAIT L2
ENSG00000125703 ATG4C 477843 sc-eQTL 5.90e-01 0.0453 0.0841 0.565 MAIT L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 8.94e-02 -0.143 0.0837 0.565 MAIT L2
ENSG00000162607 USP1 825678 sc-eQTL 8.84e-02 -0.142 0.0831 0.565 MAIT L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 2.33e-02 -0.196 0.0857 0.565 MAIT L2
ENSG00000079739 PGM1 -331436 sc-eQTL 4.26e-01 0.0694 0.087 0.558 NK_CD56bright L2
ENSG00000088035 ALG6 -105600 sc-eQTL 9.63e-01 -0.00409 0.0893 0.558 NK_CD56bright L2
ENSG00000116641 DOCK7 573589 sc-eQTL 3.30e-01 -0.0753 0.0772 0.558 NK_CD56bright L2
ENSG00000125703 ATG4C 477843 sc-eQTL 5.20e-01 -0.0557 0.0863 0.558 NK_CD56bright L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 7.82e-01 0.0249 0.09 0.558 NK_CD56bright L2
ENSG00000162607 USP1 825678 sc-eQTL 1.94e-01 0.121 0.0924 0.558 NK_CD56bright L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.65e-01 -0.0511 0.0887 0.558 NK_CD56bright L2
ENSG00000079739 PGM1 -331436 sc-eQTL 1.75e-01 0.0903 0.0664 0.56 NK_CD56dim L2
ENSG00000088035 ALG6 -105600 sc-eQTL 8.92e-01 -0.0115 0.0847 0.56 NK_CD56dim L2
ENSG00000116641 DOCK7 573589 sc-eQTL 7.65e-01 0.0221 0.0736 0.56 NK_CD56dim L2
ENSG00000125703 ATG4C 477843 sc-eQTL 1.89e-01 -0.0981 0.0745 0.56 NK_CD56dim L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.74e-01 0.0931 0.0849 0.56 NK_CD56dim L2
ENSG00000162607 USP1 825678 sc-eQTL 5.22e-01 0.0529 0.0825 0.56 NK_CD56dim L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 4.48e-01 0.0698 0.0918 0.56 NK_CD56dim L2
ENSG00000079739 PGM1 -331436 sc-eQTL 6.60e-01 -0.04 0.0908 0.566 NK_HLA L2
ENSG00000088035 ALG6 -105600 sc-eQTL 2.72e-01 -0.103 0.0939 0.566 NK_HLA L2
ENSG00000116641 DOCK7 573589 sc-eQTL 9.89e-01 -0.00101 0.072 0.566 NK_HLA L2
ENSG00000125703 ATG4C 477843 sc-eQTL 5.29e-01 0.0528 0.0837 0.566 NK_HLA L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 4.76e-01 0.0627 0.0878 0.566 NK_HLA L2
ENSG00000162607 USP1 825678 sc-eQTL 4.56e-01 0.0687 0.0919 0.566 NK_HLA L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.31e-01 -0.0525 0.0837 0.566 NK_HLA L2
ENSG00000079739 PGM1 -331436 sc-eQTL 9.65e-01 -0.00317 0.0726 0.56 NK_cytokine L2
ENSG00000088035 ALG6 -105600 sc-eQTL 7.07e-01 0.0309 0.082 0.56 NK_cytokine L2
ENSG00000116641 DOCK7 573589 sc-eQTL 5.08e-01 0.0504 0.0759 0.56 NK_cytokine L2
ENSG00000125703 ATG4C 477843 sc-eQTL 7.38e-02 0.139 0.0771 0.56 NK_cytokine L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 7.63e-01 0.0242 0.0805 0.56 NK_cytokine L2
ENSG00000162607 USP1 825678 sc-eQTL 9.81e-02 -0.14 0.0841 0.56 NK_cytokine L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 4.32e-01 -0.0675 0.0856 0.56 NK_cytokine L2
ENSG00000079739 PGM1 -331436 sc-eQTL 9.89e-01 -0.00142 0.101 0.541 PB L2
ENSG00000088035 ALG6 -105600 sc-eQTL 6.01e-02 -0.197 0.104 0.541 PB L2
ENSG00000116641 DOCK7 573589 sc-eQTL 5.68e-01 -0.0647 0.113 0.541 PB L2
ENSG00000125703 ATG4C 477843 sc-eQTL 8.75e-01 0.0155 0.0985 0.541 PB L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.41e-01 0.115 0.0977 0.541 PB L2
ENSG00000162607 USP1 825678 sc-eQTL 9.80e-02 -0.161 0.0967 0.541 PB L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 7.58e-01 -0.0333 0.108 0.541 PB L2
ENSG00000079739 PGM1 -331436 sc-eQTL 3.98e-01 -0.0679 0.0801 0.561 Pro_T L2
ENSG00000088035 ALG6 -105600 sc-eQTL 1.33e-01 -0.122 0.0812 0.561 Pro_T L2
ENSG00000116641 DOCK7 573589 sc-eQTL 9.54e-01 0.00474 0.082 0.561 Pro_T L2
ENSG00000125703 ATG4C 477843 sc-eQTL 9.82e-01 0.00161 0.0717 0.561 Pro_T L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.68e-01 0.0992 0.0716 0.561 Pro_T L2
ENSG00000162607 USP1 825678 sc-eQTL 4.37e-01 0.0385 0.0494 0.561 Pro_T L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 4.81e-01 0.059 0.0835 0.561 Pro_T L2
ENSG00000079739 PGM1 -331436 sc-eQTL 2.67e-02 0.188 0.0843 0.562 Treg L2
ENSG00000088035 ALG6 -105600 sc-eQTL 6.28e-01 -0.0442 0.0911 0.562 Treg L2
ENSG00000116641 DOCK7 573589 sc-eQTL 3.11e-01 0.0848 0.0835 0.562 Treg L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.75e-01 -0.0611 0.0854 0.562 Treg L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 8.62e-01 0.0156 0.0895 0.562 Treg L2
ENSG00000162607 USP1 825678 sc-eQTL 9.60e-01 0.00436 0.0866 0.562 Treg L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.18e-01 0.0197 0.0856 0.562 Treg L2
ENSG00000079739 PGM1 -331436 sc-eQTL 6.90e-01 0.0338 0.0848 0.563 cDC L2
ENSG00000088035 ALG6 -105600 sc-eQTL 8.58e-02 0.147 0.0853 0.563 cDC L2
ENSG00000116641 DOCK7 573589 sc-eQTL 4.56e-02 0.168 0.0835 0.563 cDC L2
ENSG00000125703 ATG4C 477843 sc-eQTL 1.27e-01 0.112 0.0728 0.563 cDC L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 3.03e-01 -0.0957 0.0926 0.563 cDC L2
ENSG00000162607 USP1 825678 sc-eQTL 9.66e-01 0.00352 0.0827 0.563 cDC L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.79e-01 0.0415 0.0746 0.563 cDC L2
ENSG00000079739 PGM1 -331436 sc-eQTL 4.76e-01 -0.0567 0.0795 0.562 cMono_IL1B L2
ENSG00000088035 ALG6 -105600 sc-eQTL 3.34e-01 -0.0769 0.0795 0.562 cMono_IL1B L2
ENSG00000116641 DOCK7 573589 sc-eQTL 3.65e-01 0.0761 0.0838 0.562 cMono_IL1B L2
ENSG00000125703 ATG4C 477843 sc-eQTL 9.01e-01 0.00738 0.0591 0.562 cMono_IL1B L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 4.28e-01 0.0664 0.0835 0.562 cMono_IL1B L2
ENSG00000162607 USP1 825678 sc-eQTL 9.10e-01 -0.00831 0.0738 0.562 cMono_IL1B L2
ENSG00000079739 PGM1 -331436 sc-eQTL 2.98e-01 0.0927 0.0889 0.562 cMono_S100A L2
ENSG00000088035 ALG6 -105600 sc-eQTL 1.74e-01 0.123 0.0899 0.562 cMono_S100A L2
ENSG00000116641 DOCK7 573589 sc-eQTL 7.58e-01 0.0258 0.0837 0.562 cMono_S100A L2
ENSG00000125703 ATG4C 477843 sc-eQTL 3.93e-01 0.062 0.0724 0.562 cMono_S100A L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 9.06e-02 0.138 0.0812 0.562 cMono_S100A L2
ENSG00000162607 USP1 825678 sc-eQTL 1.58e-01 0.119 0.0838 0.562 cMono_S100A L2
ENSG00000079739 PGM1 -331436 sc-eQTL 5.73e-01 -0.0575 0.102 0.597 gdT L2
ENSG00000088035 ALG6 -105600 sc-eQTL 6.09e-02 -0.203 0.107 0.597 gdT L2
ENSG00000116641 DOCK7 573589 sc-eQTL 8.20e-01 0.0243 0.107 0.597 gdT L2
ENSG00000125703 ATG4C 477843 sc-eQTL 2.29e-02 -0.23 0.0999 0.597 gdT L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.43e-01 -0.126 0.108 0.597 gdT L2
ENSG00000162607 USP1 825678 sc-eQTL 7.83e-01 0.0282 0.102 0.597 gdT L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.45e-01 -0.0208 0.106 0.597 gdT L2
ENSG00000079739 PGM1 -331436 sc-eQTL 9.44e-01 0.00619 0.0878 0.567 intMono L2
ENSG00000088035 ALG6 -105600 sc-eQTL 6.65e-01 -0.0355 0.0817 0.567 intMono L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.51e-01 -0.0378 0.0835 0.567 intMono L2
ENSG00000125703 ATG4C 477843 sc-eQTL 4.53e-01 -0.0598 0.0796 0.567 intMono L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.15e-01 0.109 0.0875 0.567 intMono L2
ENSG00000162607 USP1 825678 sc-eQTL 9.05e-01 0.0107 0.0893 0.567 intMono L2
ENSG00000079739 PGM1 -331436 sc-eQTL 7.10e-01 0.0297 0.0799 0.559 ncMono L2
ENSG00000088035 ALG6 -105600 sc-eQTL 3.94e-01 -0.0749 0.0877 0.559 ncMono L2
ENSG00000116641 DOCK7 573589 sc-eQTL 6.77e-01 0.0361 0.0864 0.559 ncMono L2
ENSG00000125703 ATG4C 477843 sc-eQTL 2.52e-01 0.0925 0.0805 0.559 ncMono L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 4.67e-01 0.0615 0.0844 0.559 ncMono L2
ENSG00000162607 USP1 825678 sc-eQTL 1.04e-01 -0.14 0.0857 0.559 ncMono L2
ENSG00000079739 PGM1 -331436 sc-eQTL 9.48e-01 -0.00654 0.0995 0.582 pDC L2
ENSG00000088035 ALG6 -105600 sc-eQTL 4.07e-01 -0.0805 0.0967 0.582 pDC L2
ENSG00000116641 DOCK7 573589 sc-eQTL 1.98e-01 0.127 0.0985 0.582 pDC L2
ENSG00000125703 ATG4C 477843 sc-eQTL 8.63e-01 0.0153 0.0888 0.582 pDC L2
ENSG00000142856 ITGB3BP -331746 sc-eQTL 8.81e-02 0.17 0.0988 0.582 pDC L2
ENSG00000162607 USP1 825678 sc-eQTL 6.70e-01 -0.0433 0.102 0.582 pDC L2
ENSG00000203965 EFCAB7 -261397 sc-eQTL 6.83e-01 0.0361 0.0882 0.582 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -331436 sc-eQTL 6.56e-01 -0.0364 0.0817 0.562 B_Memory LOneK1K
ENSG00000088035 ALG6 -105600 sc-eQTL 3.10e-01 -0.0918 0.0902 0.562 B_Memory LOneK1K
ENSG00000116641 DOCK7 573589 sc-eQTL 4.46e-01 -0.0598 0.0783 0.562 B_Memory LOneK1K
ENSG00000125703 ATG4C 477843 sc-eQTL 4.04e-01 0.0529 0.0633 0.562 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.51e-01 0.119 0.0829 0.562 B_Memory LOneK1K
ENSG00000162607 USP1 825678 sc-eQTL 9.02e-01 0.00994 0.0809 0.562 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -261397 sc-eQTL 3.63e-01 0.079 0.0867 0.562 B_Memory LOneK1K
ENSG00000079739 PGM1 -331436 sc-eQTL 3.75e-01 -0.0763 0.0859 0.562 B_Naive LOneK1K
ENSG00000088035 ALG6 -105600 sc-eQTL 4.14e-01 -0.0724 0.0884 0.562 B_Naive LOneK1K
ENSG00000116641 DOCK7 573589 sc-eQTL 1.79e-01 0.111 0.0824 0.562 B_Naive LOneK1K
ENSG00000125703 ATG4C 477843 sc-eQTL 4.51e-01 0.0476 0.063 0.562 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -331746 sc-eQTL 5.05e-01 0.0595 0.0891 0.562 B_Naive LOneK1K
ENSG00000162607 USP1 825678 sc-eQTL 9.46e-01 -0.00524 0.0767 0.562 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -261397 sc-eQTL 5.77e-01 0.0501 0.0896 0.562 B_Naive LOneK1K
ENSG00000079739 PGM1 -331436 sc-eQTL 7.96e-01 0.0211 0.0818 0.562 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -105600 sc-eQTL 7.35e-01 -0.0269 0.0792 0.562 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 573589 sc-eQTL 3.12e-01 0.0806 0.0795 0.562 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 477843 sc-eQTL 3.55e-01 0.051 0.055 0.562 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.00e-01 0.105 0.0812 0.562 CD14_Mono LOneK1K
ENSG00000162607 USP1 825678 sc-eQTL 5.78e-01 0.0387 0.0696 0.562 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -331436 sc-eQTL 7.85e-01 -0.021 0.0769 0.56 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -105600 sc-eQTL 5.75e-01 -0.049 0.0873 0.56 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 573589 sc-eQTL 9.51e-01 0.00533 0.0864 0.56 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 477843 sc-eQTL 5.15e-01 0.048 0.0736 0.56 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -331746 sc-eQTL 1.84e-01 0.114 0.0852 0.56 CD16_Mono LOneK1K
ENSG00000162607 USP1 825678 sc-eQTL 4.69e-02 -0.159 0.0796 0.56 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -331436 sc-eQTL 1.38e-01 0.0967 0.065 0.56 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -105600 sc-eQTL 7.78e-01 -0.0221 0.0784 0.56 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 573589 sc-eQTL 6.03e-01 0.0365 0.0702 0.56 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 477843 sc-eQTL 6.99e-01 0.0272 0.0701 0.56 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -331746 sc-eQTL 2.86e-01 0.0887 0.0829 0.56 NK_CD56dim LOneK1K
ENSG00000162607 USP1 825678 sc-eQTL 7.25e-01 -0.0266 0.0754 0.56 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -261397 sc-eQTL 8.47e-01 0.0177 0.0918 0.56 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -331436 eQTL 0.00435 -0.0503 0.0176 0.0 0.0 0.403
ENSG00000142856 ITGB3BP -331746 eQTL 0.0325 0.062 0.0289 0.0 0.0 0.403

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -331436 4.39e-06 1.25e-06 2.79e-07 1.2e-06 2.05e-07 6.42e-07 1.58e-06 2.21e-07 1.03e-06 3.1e-07 1.35e-06 5.28e-07 2.25e-06 2.79e-07 5.22e-07 7.3e-07 6.98e-07 8.27e-07 3.98e-07 4.32e-07 2.26e-07 1.72e-06 7.63e-07 5.53e-07 1.94e-06 2.57e-07 9.41e-07 5.27e-07 1.07e-06 8.48e-07 5.2e-07 2.07e-07 1.04e-07 4.91e-07 4.28e-07 1.55e-07 1.1e-07 8.15e-08 2.92e-07 1.82e-08 1.03e-07 2.39e-06 5.07e-08 1.72e-08 1.16e-07 1.27e-07 1.18e-07 0.0 5.86e-08