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Genes within 1Mb (chr1:63245450:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -347961 sc-eQTL 2.20e-01 0.0896 0.0728 0.457 B L1
ENSG00000088035 ALG6 -122125 sc-eQTL 2.27e-01 0.0913 0.0754 0.457 B L1
ENSG00000116641 DOCK7 557064 sc-eQTL 5.48e-01 -0.0455 0.0756 0.457 B L1
ENSG00000125703 ATG4C 461318 sc-eQTL 5.26e-01 -0.0334 0.0525 0.457 B L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 5.49e-01 -0.0502 0.0836 0.457 B L1
ENSG00000162607 USP1 809153 sc-eQTL 5.06e-01 -0.0484 0.0726 0.457 B L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 3.51e-01 -0.0799 0.0856 0.457 B L1
ENSG00000079739 PGM1 -347961 sc-eQTL 1.54e-01 0.0893 0.0625 0.457 CD4T L1
ENSG00000088035 ALG6 -122125 sc-eQTL 7.58e-01 -0.0214 0.0692 0.457 CD4T L1
ENSG00000116641 DOCK7 557064 sc-eQTL 2.68e-01 -0.0776 0.0699 0.457 CD4T L1
ENSG00000125703 ATG4C 461318 sc-eQTL 6.22e-01 -0.028 0.0566 0.457 CD4T L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 9.29e-01 -0.00715 0.0804 0.457 CD4T L1
ENSG00000162607 USP1 809153 sc-eQTL 4.40e-01 -0.0425 0.0549 0.457 CD4T L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 6.60e-01 -0.0318 0.0721 0.457 CD4T L1
ENSG00000079739 PGM1 -347961 sc-eQTL 8.87e-01 -0.0098 0.0686 0.457 CD8T L1
ENSG00000088035 ALG6 -122125 sc-eQTL 6.39e-01 0.0355 0.0756 0.457 CD8T L1
ENSG00000116641 DOCK7 557064 sc-eQTL 2.20e-01 -0.094 0.0764 0.457 CD8T L1
ENSG00000125703 ATG4C 461318 sc-eQTL 5.89e-01 0.0394 0.0728 0.457 CD8T L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.61e-01 -0.0914 0.0812 0.457 CD8T L1
ENSG00000162607 USP1 809153 sc-eQTL 9.97e-01 -0.000259 0.0634 0.457 CD8T L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 6.55e-01 0.0363 0.0811 0.457 CD8T L1
ENSG00000079739 PGM1 -347961 sc-eQTL 2.22e-01 -0.0937 0.0765 0.457 DC L1
ENSG00000088035 ALG6 -122125 sc-eQTL 5.54e-01 0.0469 0.0792 0.457 DC L1
ENSG00000116641 DOCK7 557064 sc-eQTL 2.61e-02 -0.18 0.0802 0.457 DC L1
ENSG00000125703 ATG4C 461318 sc-eQTL 9.51e-02 -0.106 0.0631 0.457 DC L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.13e-01 -0.045 0.0888 0.457 DC L1
ENSG00000162607 USP1 809153 sc-eQTL 9.46e-01 -0.00521 0.0776 0.457 DC L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 7.96e-01 -0.02 0.0773 0.457 DC L1
ENSG00000079739 PGM1 -347961 sc-eQTL 7.83e-01 -0.021 0.0761 0.457 Mono L1
ENSG00000088035 ALG6 -122125 sc-eQTL 7.83e-01 0.0219 0.0794 0.457 Mono L1
ENSG00000116641 DOCK7 557064 sc-eQTL 4.12e-01 -0.0631 0.0767 0.457 Mono L1
ENSG00000125703 ATG4C 461318 sc-eQTL 3.71e-01 -0.0465 0.0518 0.457 Mono L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 8.09e-02 -0.143 0.0814 0.457 Mono L1
ENSG00000162607 USP1 809153 sc-eQTL 8.35e-01 -0.014 0.0673 0.457 Mono L1
ENSG00000079739 PGM1 -347961 sc-eQTL 8.86e-02 -0.109 0.0635 0.457 NK L1
ENSG00000088035 ALG6 -122125 sc-eQTL 8.20e-01 0.0171 0.0749 0.457 NK L1
ENSG00000116641 DOCK7 557064 sc-eQTL 9.92e-01 -0.000646 0.0617 0.457 NK L1
ENSG00000125703 ATG4C 461318 sc-eQTL 8.22e-01 0.015 0.0663 0.457 NK L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.99e-01 -0.0856 0.0822 0.457 NK L1
ENSG00000162607 USP1 809153 sc-eQTL 5.19e-01 -0.0475 0.0735 0.457 NK L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 9.92e-01 -0.000894 0.0894 0.457 NK L1
ENSG00000079739 PGM1 -347961 sc-eQTL 2.23e-01 0.0907 0.0742 0.457 Other_T L1
ENSG00000088035 ALG6 -122125 sc-eQTL 1.45e-01 0.109 0.0744 0.457 Other_T L1
ENSG00000116641 DOCK7 557064 sc-eQTL 5.01e-01 0.0514 0.0763 0.457 Other_T L1
ENSG00000125703 ATG4C 461318 sc-eQTL 9.33e-01 0.00557 0.0661 0.457 Other_T L1
ENSG00000142856 ITGB3BP -348271 sc-eQTL 9.79e-01 0.00152 0.0586 0.457 Other_T L1
ENSG00000162607 USP1 809153 sc-eQTL 6.65e-01 0.022 0.0508 0.457 Other_T L1
ENSG00000203965 EFCAB7 -277922 sc-eQTL 2.27e-01 0.109 0.0902 0.457 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -347961 sc-eQTL 9.04e-01 0.0115 0.0948 0.459 B_Activated L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.11e-01 -0.0218 0.0908 0.459 B_Activated L2
ENSG00000116641 DOCK7 557064 sc-eQTL 8.11e-01 0.0202 0.0846 0.459 B_Activated L2
ENSG00000125703 ATG4C 461318 sc-eQTL 8.99e-01 0.0113 0.089 0.459 B_Activated L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 7.96e-02 -0.152 0.0861 0.459 B_Activated L2
ENSG00000162607 USP1 809153 sc-eQTL 2.15e-01 -0.117 0.0938 0.459 B_Activated L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 4.01e-01 -0.0692 0.0821 0.459 B_Activated L2
ENSG00000079739 PGM1 -347961 sc-eQTL 3.15e-01 0.0886 0.088 0.455 B_Intermediate L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.26e-01 -0.0198 0.0896 0.455 B_Intermediate L2
ENSG00000116641 DOCK7 557064 sc-eQTL 5.45e-01 0.0519 0.0855 0.455 B_Intermediate L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.43e-01 -0.106 0.0721 0.455 B_Intermediate L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 4.86e-01 -0.0602 0.0862 0.455 B_Intermediate L2
ENSG00000162607 USP1 809153 sc-eQTL 4.14e-01 -0.0705 0.0861 0.455 B_Intermediate L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.50e-01 0.0511 0.0854 0.455 B_Intermediate L2
ENSG00000079739 PGM1 -347961 sc-eQTL 2.32e-01 0.102 0.085 0.453 B_Memory L2
ENSG00000088035 ALG6 -122125 sc-eQTL 6.02e-03 0.236 0.0851 0.453 B_Memory L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.67e-01 -0.00337 0.0813 0.453 B_Memory L2
ENSG00000125703 ATG4C 461318 sc-eQTL 3.46e-01 -0.0728 0.0771 0.453 B_Memory L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.42e-01 -0.103 0.0881 0.453 B_Memory L2
ENSG00000162607 USP1 809153 sc-eQTL 1.78e-01 0.12 0.0888 0.453 B_Memory L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 2.43e-01 -0.102 0.0875 0.453 B_Memory L2
ENSG00000079739 PGM1 -347961 sc-eQTL 4.77e-01 0.0622 0.0872 0.457 B_Naive1 L2
ENSG00000088035 ALG6 -122125 sc-eQTL 4.59e-01 0.0649 0.0875 0.457 B_Naive1 L2
ENSG00000116641 DOCK7 557064 sc-eQTL 2.27e-01 -0.101 0.0836 0.457 B_Naive1 L2
ENSG00000125703 ATG4C 461318 sc-eQTL 7.76e-02 -0.114 0.0642 0.457 B_Naive1 L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 4.42e-01 -0.0659 0.0857 0.457 B_Naive1 L2
ENSG00000162607 USP1 809153 sc-eQTL 9.05e-01 -0.00902 0.0754 0.457 B_Naive1 L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 7.11e-01 -0.0339 0.0915 0.457 B_Naive1 L2
ENSG00000079739 PGM1 -347961 sc-eQTL 6.47e-01 0.0395 0.0862 0.455 B_Naive2 L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.77e-01 -0.0139 0.0899 0.455 B_Naive2 L2
ENSG00000116641 DOCK7 557064 sc-eQTL 8.58e-01 -0.0155 0.0864 0.455 B_Naive2 L2
ENSG00000125703 ATG4C 461318 sc-eQTL 6.25e-01 -0.0407 0.0831 0.455 B_Naive2 L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 7.81e-01 0.0251 0.0902 0.455 B_Naive2 L2
ENSG00000162607 USP1 809153 sc-eQTL 7.73e-01 -0.0248 0.0859 0.455 B_Naive2 L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.34e-01 0.0558 0.0897 0.455 B_Naive2 L2
ENSG00000079739 PGM1 -347961 sc-eQTL 2.81e-01 -0.0932 0.0862 0.457 CD4_CTL L2
ENSG00000088035 ALG6 -122125 sc-eQTL 9.40e-01 0.0069 0.0914 0.457 CD4_CTL L2
ENSG00000116641 DOCK7 557064 sc-eQTL 4.69e-01 0.0579 0.0798 0.457 CD4_CTL L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.64e-01 -0.115 0.0822 0.457 CD4_CTL L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 5.70e-01 0.0503 0.0883 0.457 CD4_CTL L2
ENSG00000162607 USP1 809153 sc-eQTL 8.50e-02 -0.145 0.0835 0.457 CD4_CTL L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 8.99e-01 -0.0107 0.084 0.457 CD4_CTL L2
ENSG00000079739 PGM1 -347961 sc-eQTL 6.98e-02 0.128 0.0703 0.457 CD4_Naive L2
ENSG00000088035 ALG6 -122125 sc-eQTL 3.32e-01 -0.0747 0.0768 0.457 CD4_Naive L2
ENSG00000116641 DOCK7 557064 sc-eQTL 2.85e-01 -0.081 0.0755 0.457 CD4_Naive L2
ENSG00000125703 ATG4C 461318 sc-eQTL 4.32e-01 -0.0525 0.0668 0.457 CD4_Naive L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 8.59e-01 -0.0146 0.0817 0.457 CD4_Naive L2
ENSG00000162607 USP1 809153 sc-eQTL 2.95e-01 -0.0654 0.0623 0.457 CD4_Naive L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 1.71e-01 -0.111 0.0808 0.457 CD4_Naive L2
ENSG00000079739 PGM1 -347961 sc-eQTL 2.26e-01 0.0884 0.0728 0.457 CD4_TCM L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.68e-01 -0.0141 0.0848 0.457 CD4_TCM L2
ENSG00000116641 DOCK7 557064 sc-eQTL 6.52e-01 -0.0339 0.0751 0.457 CD4_TCM L2
ENSG00000125703 ATG4C 461318 sc-eQTL 9.81e-01 -0.0017 0.0732 0.457 CD4_TCM L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 7.61e-01 -0.0263 0.0862 0.457 CD4_TCM L2
ENSG00000162607 USP1 809153 sc-eQTL 5.86e-01 0.0386 0.0707 0.457 CD4_TCM L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 7.58e-01 -0.0257 0.0834 0.457 CD4_TCM L2
ENSG00000079739 PGM1 -347961 sc-eQTL 1.85e-01 -0.115 0.0864 0.457 CD4_TEM L2
ENSG00000088035 ALG6 -122125 sc-eQTL 3.16e-01 0.0876 0.087 0.457 CD4_TEM L2
ENSG00000116641 DOCK7 557064 sc-eQTL 2.75e-01 -0.0928 0.0848 0.457 CD4_TEM L2
ENSG00000125703 ATG4C 461318 sc-eQTL 2.60e-01 0.0931 0.0823 0.457 CD4_TEM L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.52e-01 0.0385 0.0852 0.457 CD4_TEM L2
ENSG00000162607 USP1 809153 sc-eQTL 4.95e-01 -0.0551 0.0807 0.457 CD4_TEM L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 3.72e-01 0.0788 0.0882 0.457 CD4_TEM L2
ENSG00000079739 PGM1 -347961 sc-eQTL 2.34e-01 -0.0934 0.0782 0.457 CD8_CTL L2
ENSG00000088035 ALG6 -122125 sc-eQTL 6.73e-01 0.0352 0.0834 0.457 CD8_CTL L2
ENSG00000116641 DOCK7 557064 sc-eQTL 5.25e-01 -0.0504 0.0791 0.457 CD8_CTL L2
ENSG00000125703 ATG4C 461318 sc-eQTL 6.44e-01 0.039 0.0842 0.457 CD8_CTL L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.03e-01 0.0455 0.0875 0.457 CD8_CTL L2
ENSG00000162607 USP1 809153 sc-eQTL 2.72e-01 0.0861 0.0782 0.457 CD8_CTL L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 3.31e-01 0.0873 0.0895 0.457 CD8_CTL L2
ENSG00000079739 PGM1 -347961 sc-eQTL 9.68e-01 0.00325 0.0801 0.457 CD8_Naive L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.36e-01 0.0172 0.0829 0.457 CD8_Naive L2
ENSG00000116641 DOCK7 557064 sc-eQTL 1.82e-01 -0.114 0.0854 0.457 CD8_Naive L2
ENSG00000125703 ATG4C 461318 sc-eQTL 5.33e-01 -0.0513 0.0822 0.457 CD8_Naive L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 1.74e-01 -0.113 0.083 0.457 CD8_Naive L2
ENSG00000162607 USP1 809153 sc-eQTL 2.07e-01 -0.0888 0.0702 0.457 CD8_Naive L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 1.17e-01 -0.123 0.0781 0.457 CD8_Naive L2
ENSG00000079739 PGM1 -347961 sc-eQTL 3.62e-01 -0.0822 0.09 0.451 CD8_TCM L2
ENSG00000088035 ALG6 -122125 sc-eQTL 4.74e-02 -0.18 0.0904 0.451 CD8_TCM L2
ENSG00000116641 DOCK7 557064 sc-eQTL 7.55e-01 0.0278 0.0891 0.451 CD8_TCM L2
ENSG00000125703 ATG4C 461318 sc-eQTL 2.10e-01 0.114 0.0908 0.451 CD8_TCM L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 1.68e-01 -0.122 0.0881 0.451 CD8_TCM L2
ENSG00000162607 USP1 809153 sc-eQTL 6.41e-01 -0.0397 0.0852 0.451 CD8_TCM L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.55e-01 0.0533 0.0902 0.451 CD8_TCM L2
ENSG00000079739 PGM1 -347961 sc-eQTL 9.13e-01 0.00969 0.0885 0.457 CD8_TEM L2
ENSG00000088035 ALG6 -122125 sc-eQTL 6.07e-01 0.0457 0.0887 0.457 CD8_TEM L2
ENSG00000116641 DOCK7 557064 sc-eQTL 8.22e-01 0.0194 0.0861 0.457 CD8_TEM L2
ENSG00000125703 ATG4C 461318 sc-eQTL 7.51e-01 -0.0263 0.0827 0.457 CD8_TEM L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 5.88e-01 0.0486 0.0895 0.457 CD8_TEM L2
ENSG00000162607 USP1 809153 sc-eQTL 5.85e-01 0.0467 0.0854 0.457 CD8_TEM L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 3.63e-01 0.079 0.0867 0.457 CD8_TEM L2
ENSG00000079739 PGM1 -347961 sc-eQTL 7.36e-01 0.0283 0.0837 0.455 MAIT L2
ENSG00000088035 ALG6 -122125 sc-eQTL 4.51e-01 0.0626 0.0828 0.455 MAIT L2
ENSG00000116641 DOCK7 557064 sc-eQTL 8.84e-01 0.0116 0.0794 0.455 MAIT L2
ENSG00000125703 ATG4C 461318 sc-eQTL 8.06e-01 -0.0206 0.0837 0.455 MAIT L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 7.00e-02 0.152 0.0832 0.455 MAIT L2
ENSG00000162607 USP1 809153 sc-eQTL 6.09e-02 0.156 0.0825 0.455 MAIT L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 4.48e-02 0.173 0.0855 0.455 MAIT L2
ENSG00000079739 PGM1 -347961 sc-eQTL 8.15e-01 -0.0203 0.0868 0.46 NK_CD56bright L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.04e-01 0.0221 0.089 0.46 NK_CD56bright L2
ENSG00000116641 DOCK7 557064 sc-eQTL 5.30e-01 0.0484 0.077 0.46 NK_CD56bright L2
ENSG00000125703 ATG4C 461318 sc-eQTL 2.50e-01 0.0991 0.0859 0.46 NK_CD56bright L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.64e-01 -0.0389 0.0897 0.46 NK_CD56bright L2
ENSG00000162607 USP1 809153 sc-eQTL 1.87e-01 -0.122 0.0921 0.46 NK_CD56bright L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 6.49e-01 0.0404 0.0884 0.46 NK_CD56bright L2
ENSG00000079739 PGM1 -347961 sc-eQTL 2.24e-01 -0.0805 0.066 0.459 NK_CD56dim L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.50e-01 0.0159 0.0841 0.459 NK_CD56dim L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.43e-01 -0.00527 0.0732 0.459 NK_CD56dim L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.40e-01 0.109 0.0739 0.459 NK_CD56dim L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 5.30e-01 -0.0532 0.0845 0.459 NK_CD56dim L2
ENSG00000162607 USP1 809153 sc-eQTL 5.84e-01 -0.045 0.082 0.459 NK_CD56dim L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 2.93e-01 -0.096 0.0911 0.459 NK_CD56dim L2
ENSG00000079739 PGM1 -347961 sc-eQTL 4.52e-01 0.0686 0.091 0.45 NK_HLA L2
ENSG00000088035 ALG6 -122125 sc-eQTL 6.37e-01 0.0447 0.0945 0.45 NK_HLA L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.78e-01 0.002 0.0723 0.45 NK_HLA L2
ENSG00000125703 ATG4C 461318 sc-eQTL 3.69e-01 -0.0756 0.0839 0.45 NK_HLA L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 4.51e-01 -0.0666 0.0881 0.45 NK_HLA L2
ENSG00000162607 USP1 809153 sc-eQTL 4.98e-01 -0.0626 0.0923 0.45 NK_HLA L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.81e-01 0.0464 0.084 0.45 NK_HLA L2
ENSG00000079739 PGM1 -347961 sc-eQTL 7.08e-01 -0.0272 0.0723 0.459 NK_cytokine L2
ENSG00000088035 ALG6 -122125 sc-eQTL 7.31e-01 -0.0281 0.0817 0.459 NK_cytokine L2
ENSG00000116641 DOCK7 557064 sc-eQTL 5.94e-01 -0.0404 0.0757 0.459 NK_cytokine L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.66e-01 -0.107 0.0771 0.459 NK_cytokine L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 8.29e-01 -0.0174 0.0802 0.459 NK_cytokine L2
ENSG00000162607 USP1 809153 sc-eQTL 2.22e-01 0.103 0.0841 0.459 NK_cytokine L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 4.54e-01 0.064 0.0854 0.459 NK_cytokine L2
ENSG00000079739 PGM1 -347961 sc-eQTL 6.87e-01 0.0403 0.0997 0.481 PB L2
ENSG00000088035 ALG6 -122125 sc-eQTL 3.60e-02 0.218 0.103 0.481 PB L2
ENSG00000116641 DOCK7 557064 sc-eQTL 5.25e-01 0.0714 0.112 0.481 PB L2
ENSG00000125703 ATG4C 461318 sc-eQTL 9.37e-01 -0.00778 0.0977 0.481 PB L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 4.42e-01 -0.0751 0.0973 0.481 PB L2
ENSG00000162607 USP1 809153 sc-eQTL 1.65e-01 0.135 0.0963 0.481 PB L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 8.69e-01 0.0177 0.107 0.481 PB L2
ENSG00000079739 PGM1 -347961 sc-eQTL 4.06e-01 0.0657 0.0788 0.459 Pro_T L2
ENSG00000088035 ALG6 -122125 sc-eQTL 8.49e-02 0.138 0.0798 0.459 Pro_T L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.42e-01 0.00592 0.0806 0.459 Pro_T L2
ENSG00000125703 ATG4C 461318 sc-eQTL 7.37e-01 -0.0238 0.0705 0.459 Pro_T L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 1.37e-01 -0.105 0.0704 0.459 Pro_T L2
ENSG00000162607 USP1 809153 sc-eQTL 4.75e-01 -0.0348 0.0486 0.459 Pro_T L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 6.08e-01 -0.0422 0.0822 0.459 Pro_T L2
ENSG00000079739 PGM1 -347961 sc-eQTL 8.99e-02 -0.143 0.0841 0.457 Treg L2
ENSG00000088035 ALG6 -122125 sc-eQTL 5.65e-01 0.0522 0.0904 0.457 Treg L2
ENSG00000116641 DOCK7 557064 sc-eQTL 6.38e-01 -0.0391 0.083 0.457 Treg L2
ENSG00000125703 ATG4C 461318 sc-eQTL 7.35e-01 0.0288 0.0849 0.457 Treg L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.85e-01 0.036 0.0888 0.457 Treg L2
ENSG00000162607 USP1 809153 sc-eQTL 7.42e-01 -0.0283 0.0859 0.457 Treg L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 7.94e-01 -0.0223 0.085 0.457 Treg L2
ENSG00000079739 PGM1 -347961 sc-eQTL 9.95e-01 0.000566 0.0842 0.456 cDC L2
ENSG00000088035 ALG6 -122125 sc-eQTL 3.53e-01 -0.0793 0.0852 0.456 cDC L2
ENSG00000116641 DOCK7 557064 sc-eQTL 6.74e-02 -0.153 0.083 0.456 cDC L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.75e-01 -0.0987 0.0724 0.456 cDC L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.76e-01 0.101 0.0919 0.456 cDC L2
ENSG00000162607 USP1 809153 sc-eQTL 8.74e-01 -0.0131 0.0821 0.456 cDC L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.88e-01 -0.0402 0.0741 0.456 cDC L2
ENSG00000079739 PGM1 -347961 sc-eQTL 6.74e-01 0.0329 0.0781 0.457 cMono_IL1B L2
ENSG00000088035 ALG6 -122125 sc-eQTL 3.49e-01 0.0732 0.0781 0.457 cMono_IL1B L2
ENSG00000116641 DOCK7 557064 sc-eQTL 7.91e-01 -0.0219 0.0825 0.457 cMono_IL1B L2
ENSG00000125703 ATG4C 461318 sc-eQTL 9.67e-01 0.00237 0.058 0.457 cMono_IL1B L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 3.75e-01 -0.0729 0.082 0.457 cMono_IL1B L2
ENSG00000162607 USP1 809153 sc-eQTL 9.56e-01 0.00401 0.0725 0.457 cMono_IL1B L2
ENSG00000079739 PGM1 -347961 sc-eQTL 4.64e-01 -0.0641 0.0874 0.457 cMono_S100A L2
ENSG00000088035 ALG6 -122125 sc-eQTL 2.74e-01 -0.0971 0.0884 0.457 cMono_S100A L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.80e-01 0.00202 0.0822 0.457 cMono_S100A L2
ENSG00000125703 ATG4C 461318 sc-eQTL 1.35e-01 -0.106 0.0708 0.457 cMono_S100A L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.73e-02 -0.176 0.0794 0.457 cMono_S100A L2
ENSG00000162607 USP1 809153 sc-eQTL 7.40e-02 -0.147 0.082 0.457 cMono_S100A L2
ENSG00000079739 PGM1 -347961 sc-eQTL 3.53e-01 0.094 0.101 0.421 gdT L2
ENSG00000088035 ALG6 -122125 sc-eQTL 2.16e-01 0.133 0.107 0.421 gdT L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.55e-01 0.00595 0.106 0.421 gdT L2
ENSG00000125703 ATG4C 461318 sc-eQTL 2.84e-02 0.22 0.0993 0.421 gdT L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 3.43e-01 0.102 0.107 0.421 gdT L2
ENSG00000162607 USP1 809153 sc-eQTL 9.21e-01 0.0101 0.102 0.421 gdT L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 7.58e-01 -0.0325 0.105 0.421 gdT L2
ENSG00000079739 PGM1 -347961 sc-eQTL 8.24e-01 0.0193 0.0863 0.453 intMono L2
ENSG00000088035 ALG6 -122125 sc-eQTL 5.05e-01 0.0536 0.0803 0.453 intMono L2
ENSG00000116641 DOCK7 557064 sc-eQTL 9.97e-01 0.000284 0.0821 0.453 intMono L2
ENSG00000125703 ATG4C 461318 sc-eQTL 4.19e-01 0.0634 0.0783 0.453 intMono L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 2.73e-01 -0.0946 0.0861 0.453 intMono L2
ENSG00000162607 USP1 809153 sc-eQTL 9.41e-01 0.00651 0.0878 0.453 intMono L2
ENSG00000079739 PGM1 -347961 sc-eQTL 8.22e-01 -0.0179 0.0794 0.462 ncMono L2
ENSG00000088035 ALG6 -122125 sc-eQTL 2.51e-01 0.1 0.087 0.462 ncMono L2
ENSG00000116641 DOCK7 557064 sc-eQTL 7.06e-01 -0.0325 0.0859 0.462 ncMono L2
ENSG00000125703 ATG4C 461318 sc-eQTL 3.00e-01 -0.0831 0.08 0.462 ncMono L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 6.32e-01 -0.0402 0.0839 0.462 ncMono L2
ENSG00000162607 USP1 809153 sc-eQTL 1.09e-01 0.137 0.0852 0.462 ncMono L2
ENSG00000079739 PGM1 -347961 sc-eQTL 7.54e-01 0.0305 0.0974 0.438 pDC L2
ENSG00000088035 ALG6 -122125 sc-eQTL 2.19e-01 0.116 0.0944 0.438 pDC L2
ENSG00000116641 DOCK7 557064 sc-eQTL 1.86e-01 -0.128 0.0964 0.438 pDC L2
ENSG00000125703 ATG4C 461318 sc-eQTL 9.94e-01 -0.000639 0.0869 0.438 pDC L2
ENSG00000142856 ITGB3BP -348271 sc-eQTL 1.05e-01 -0.158 0.0968 0.438 pDC L2
ENSG00000162607 USP1 809153 sc-eQTL 9.08e-01 0.0115 0.0995 0.438 pDC L2
ENSG00000203965 EFCAB7 -277922 sc-eQTL 8.56e-01 -0.0157 0.0864 0.438 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -347961 sc-eQTL 4.24e-01 0.0649 0.081 0.457 B_Memory LOneK1K
ENSG00000088035 ALG6 -122125 sc-eQTL 3.25e-01 0.0882 0.0894 0.457 B_Memory LOneK1K
ENSG00000116641 DOCK7 557064 sc-eQTL 3.91e-01 0.0667 0.0777 0.457 B_Memory LOneK1K
ENSG00000125703 ATG4C 461318 sc-eQTL 2.87e-01 -0.067 0.0627 0.457 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -348271 sc-eQTL 1.10e-01 -0.132 0.0822 0.457 B_Memory LOneK1K
ENSG00000162607 USP1 809153 sc-eQTL 7.73e-01 -0.0231 0.0802 0.457 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -277922 sc-eQTL 3.36e-01 -0.0829 0.0859 0.457 B_Memory LOneK1K
ENSG00000079739 PGM1 -347961 sc-eQTL 3.15e-01 0.0856 0.0849 0.457 B_Naive LOneK1K
ENSG00000088035 ALG6 -122125 sc-eQTL 5.99e-01 0.0461 0.0876 0.457 B_Naive LOneK1K
ENSG00000116641 DOCK7 557064 sc-eQTL 1.64e-01 -0.114 0.0815 0.457 B_Naive LOneK1K
ENSG00000125703 ATG4C 461318 sc-eQTL 2.19e-01 -0.0767 0.0622 0.457 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -348271 sc-eQTL 7.14e-01 -0.0324 0.0883 0.457 B_Naive LOneK1K
ENSG00000162607 USP1 809153 sc-eQTL 9.24e-01 0.00729 0.0759 0.457 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -277922 sc-eQTL 8.37e-01 -0.0183 0.0888 0.457 B_Naive LOneK1K
ENSG00000079739 PGM1 -347961 sc-eQTL 7.54e-01 -0.0252 0.0801 0.457 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -122125 sc-eQTL 6.39e-01 0.0365 0.0776 0.457 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 557064 sc-eQTL 7.81e-01 -0.0218 0.0781 0.457 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 461318 sc-eQTL 2.81e-01 -0.0583 0.0539 0.457 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -348271 sc-eQTL 8.48e-02 -0.137 0.0794 0.457 CD14_Mono LOneK1K
ENSG00000162607 USP1 809153 sc-eQTL 4.03e-01 -0.0571 0.0682 0.457 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -347961 sc-eQTL 4.57e-01 0.0567 0.0761 0.459 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -122125 sc-eQTL 2.90e-01 0.0914 0.0863 0.459 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 557064 sc-eQTL 7.37e-01 -0.0287 0.0856 0.459 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 461318 sc-eQTL 4.42e-01 -0.0561 0.0729 0.459 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -348271 sc-eQTL 3.39e-01 -0.081 0.0845 0.459 CD16_Mono LOneK1K
ENSG00000162607 USP1 809153 sc-eQTL 5.79e-02 0.15 0.0789 0.459 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -347961 sc-eQTL 1.10e-01 -0.104 0.0645 0.459 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -122125 sc-eQTL 8.74e-01 0.0124 0.078 0.459 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 557064 sc-eQTL 7.36e-01 -0.0236 0.0698 0.459 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 461318 sc-eQTL 9.58e-01 0.00366 0.0697 0.459 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -348271 sc-eQTL 4.19e-01 -0.0668 0.0825 0.459 NK_CD56dim LOneK1K
ENSG00000162607 USP1 809153 sc-eQTL 7.93e-01 0.0197 0.075 0.459 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -277922 sc-eQTL 5.97e-01 -0.0483 0.0912 0.459 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -347961 eQTL 0.00201 0.0546 0.0176 0.0 0.0 0.414
ENSG00000142856 ITGB3BP -348271 eQTL 0.0468 -0.0577 0.029 0.0 0.0 0.414

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -347961 1.29e-06 9.34e-07 2.95e-07 4.19e-07 2.28e-07 4.39e-07 1.08e-06 3.26e-07 1.16e-06 3.82e-07 1.37e-06 6.02e-07 1.68e-06 2.68e-07 4.12e-07 7.19e-07 8.11e-07 5.66e-07 4.7e-07 6.07e-07 3.87e-07 1.11e-06 7.79e-07 5.75e-07 1.86e-06 3.06e-07 6.13e-07 6.46e-07 9.4e-07 1.08e-06 5.26e-07 1.54e-07 1.94e-07 4.91e-07 4.17e-07 4.47e-07 3.96e-07 1.5e-07 1.96e-07 4.23e-08 2.18e-07 1.41e-06 7.72e-08 1.29e-08 1.92e-07 7.57e-08 1.9e-07 8.31e-08 8.38e-08