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Genes within 1Mb (chr1:63229634:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -363777 sc-eQTL 6.63e-01 -0.0359 0.0824 0.759 B L1
ENSG00000088035 ALG6 -137941 sc-eQTL 4.14e-01 -0.0697 0.0853 0.759 B L1
ENSG00000116641 DOCK7 541248 sc-eQTL 7.20e-01 -0.0306 0.0854 0.759 B L1
ENSG00000125703 ATG4C 445502 sc-eQTL 3.36e-01 -0.0571 0.0592 0.759 B L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.26e-01 -0.114 0.0941 0.759 B L1
ENSG00000162607 USP1 793337 sc-eQTL 1.18e-01 -0.128 0.0815 0.759 B L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.23e-01 -0.118 0.0964 0.759 B L1
ENSG00000079739 PGM1 -363777 sc-eQTL 4.87e-01 0.0493 0.0707 0.759 CD4T L1
ENSG00000088035 ALG6 -137941 sc-eQTL 3.49e-01 0.0733 0.078 0.759 CD4T L1
ENSG00000116641 DOCK7 541248 sc-eQTL 3.24e-01 -0.0781 0.079 0.759 CD4T L1
ENSG00000125703 ATG4C 445502 sc-eQTL 9.04e-01 0.00771 0.0639 0.759 CD4T L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.57e-02 -0.173 0.0899 0.759 CD4T L1
ENSG00000162607 USP1 793337 sc-eQTL 6.70e-01 -0.0265 0.062 0.759 CD4T L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 8.97e-01 -0.0105 0.0814 0.759 CD4T L1
ENSG00000079739 PGM1 -363777 sc-eQTL 2.62e-01 -0.0881 0.0784 0.759 CD8T L1
ENSG00000088035 ALG6 -137941 sc-eQTL 3.07e-01 0.0886 0.0865 0.759 CD8T L1
ENSG00000116641 DOCK7 541248 sc-eQTL 7.79e-01 0.0247 0.0878 0.759 CD8T L1
ENSG00000125703 ATG4C 445502 sc-eQTL 8.22e-01 0.0188 0.0834 0.759 CD8T L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.67e-01 -0.103 0.093 0.759 CD8T L1
ENSG00000162607 USP1 793337 sc-eQTL 1.97e-01 -0.0937 0.0724 0.759 CD8T L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.38e-01 0.0573 0.0929 0.759 CD8T L1
ENSG00000079739 PGM1 -363777 sc-eQTL 2.11e-01 -0.107 0.085 0.752 DC L1
ENSG00000088035 ALG6 -137941 sc-eQTL 3.26e-01 0.0864 0.0878 0.752 DC L1
ENSG00000116641 DOCK7 541248 sc-eQTL 7.40e-02 -0.161 0.0895 0.752 DC L1
ENSG00000125703 ATG4C 445502 sc-eQTL 5.50e-01 0.0422 0.0705 0.752 DC L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 1.69e-01 -0.136 0.0982 0.752 DC L1
ENSG00000162607 USP1 793337 sc-eQTL 5.07e-01 -0.0572 0.0861 0.752 DC L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.65e-01 0.0258 0.0859 0.752 DC L1
ENSG00000079739 PGM1 -363777 sc-eQTL 4.09e-01 -0.0718 0.0868 0.759 Mono L1
ENSG00000088035 ALG6 -137941 sc-eQTL 2.88e-01 0.0964 0.0904 0.759 Mono L1
ENSG00000116641 DOCK7 541248 sc-eQTL 9.37e-01 0.00693 0.0877 0.759 Mono L1
ENSG00000125703 ATG4C 445502 sc-eQTL 3.61e-01 -0.0541 0.0592 0.759 Mono L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.55e-02 -0.179 0.0929 0.759 Mono L1
ENSG00000162607 USP1 793337 sc-eQTL 3.65e-01 -0.0697 0.0768 0.759 Mono L1
ENSG00000079739 PGM1 -363777 sc-eQTL 6.50e-02 -0.133 0.0719 0.758 NK L1
ENSG00000088035 ALG6 -137941 sc-eQTL 7.20e-01 0.0305 0.085 0.758 NK L1
ENSG00000116641 DOCK7 541248 sc-eQTL 4.65e-01 0.0511 0.0699 0.758 NK L1
ENSG00000125703 ATG4C 445502 sc-eQTL 8.01e-01 -0.0189 0.0752 0.758 NK L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 4.06e-01 -0.0777 0.0933 0.758 NK L1
ENSG00000162607 USP1 793337 sc-eQTL 4.15e-01 -0.0681 0.0834 0.758 NK L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 3.33e-01 -0.0982 0.101 0.758 NK L1
ENSG00000079739 PGM1 -363777 sc-eQTL 5.87e-01 0.0452 0.083 0.759 Other_T L1
ENSG00000088035 ALG6 -137941 sc-eQTL 6.11e-01 0.0425 0.0834 0.759 Other_T L1
ENSG00000116641 DOCK7 541248 sc-eQTL 4.28e-01 0.0676 0.0851 0.759 Other_T L1
ENSG00000125703 ATG4C 445502 sc-eQTL 3.84e-01 -0.0643 0.0736 0.759 Other_T L1
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.91e-01 0.0352 0.0654 0.759 Other_T L1
ENSG00000162607 USP1 793337 sc-eQTL 9.73e-01 0.00191 0.0567 0.759 Other_T L1
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.64e-01 -0.0583 0.101 0.759 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -363777 sc-eQTL 8.49e-01 -0.0209 0.11 0.765 B_Activated L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.20e-01 -0.0847 0.105 0.765 B_Activated L2
ENSG00000116641 DOCK7 541248 sc-eQTL 1.96e-01 0.126 0.0972 0.765 B_Activated L2
ENSG00000125703 ATG4C 445502 sc-eQTL 3.53e-01 -0.0955 0.103 0.765 B_Activated L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 4.19e-01 -0.0812 0.1 0.765 B_Activated L2
ENSG00000162607 USP1 793337 sc-eQTL 4.74e-01 0.078 0.109 0.765 B_Activated L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 1.29e-01 -0.144 0.0944 0.765 B_Activated L2
ENSG00000079739 PGM1 -363777 sc-eQTL 9.86e-01 0.00175 0.0984 0.758 B_Intermediate L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.69e-01 -0.0724 0.0999 0.758 B_Intermediate L2
ENSG00000116641 DOCK7 541248 sc-eQTL 6.40e-01 0.0447 0.0954 0.758 B_Intermediate L2
ENSG00000125703 ATG4C 445502 sc-eQTL 3.64e-01 -0.0733 0.0807 0.758 B_Intermediate L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 4.17e-01 -0.0782 0.0961 0.758 B_Intermediate L2
ENSG00000162607 USP1 793337 sc-eQTL 1.96e-01 -0.124 0.0958 0.758 B_Intermediate L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.46e-01 0.0309 0.0954 0.758 B_Intermediate L2
ENSG00000079739 PGM1 -363777 sc-eQTL 4.97e-01 -0.066 0.097 0.756 B_Memory L2
ENSG00000088035 ALG6 -137941 sc-eQTL 7.21e-01 -0.0353 0.0987 0.756 B_Memory L2
ENSG00000116641 DOCK7 541248 sc-eQTL 9.73e-01 -0.00319 0.0926 0.756 B_Memory L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.24e-01 -0.00841 0.088 0.756 B_Memory L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 6.25e-03 -0.273 0.0989 0.756 B_Memory L2
ENSG00000162607 USP1 793337 sc-eQTL 9.64e-01 -0.00456 0.102 0.756 B_Memory L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 4.87e-01 -0.0695 0.0999 0.756 B_Memory L2
ENSG00000079739 PGM1 -363777 sc-eQTL 6.98e-01 0.0384 0.0986 0.759 B_Naive1 L2
ENSG00000088035 ALG6 -137941 sc-eQTL 3.62e-01 -0.0904 0.0989 0.759 B_Naive1 L2
ENSG00000116641 DOCK7 541248 sc-eQTL 9.94e-01 -0.000722 0.0949 0.759 B_Naive1 L2
ENSG00000125703 ATG4C 445502 sc-eQTL 4.88e-01 -0.0507 0.073 0.759 B_Naive1 L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 4.77e-01 -0.069 0.0969 0.759 B_Naive1 L2
ENSG00000162607 USP1 793337 sc-eQTL 7.04e-01 -0.0325 0.0852 0.759 B_Naive1 L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.83e-01 -0.111 0.103 0.759 B_Naive1 L2
ENSG00000079739 PGM1 -363777 sc-eQTL 6.91e-01 -0.0384 0.0966 0.758 B_Naive2 L2
ENSG00000088035 ALG6 -137941 sc-eQTL 2.42e-01 0.118 0.1 0.758 B_Naive2 L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.23e-01 -0.0217 0.0968 0.758 B_Naive2 L2
ENSG00000125703 ATG4C 445502 sc-eQTL 8.71e-01 -0.0151 0.0932 0.758 B_Naive2 L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 1.88e-01 -0.133 0.101 0.758 B_Naive2 L2
ENSG00000162607 USP1 793337 sc-eQTL 1.23e-01 -0.148 0.0957 0.758 B_Naive2 L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.84e-01 -0.0276 0.101 0.758 B_Naive2 L2
ENSG00000079739 PGM1 -363777 sc-eQTL 5.35e-01 0.0619 0.0995 0.764 CD4_CTL L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.78e-02 -0.208 0.104 0.764 CD4_CTL L2
ENSG00000116641 DOCK7 541248 sc-eQTL 2.95e-01 0.0965 0.0918 0.764 CD4_CTL L2
ENSG00000125703 ATG4C 445502 sc-eQTL 1.60e-01 -0.134 0.0948 0.764 CD4_CTL L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.59e-01 0.0595 0.102 0.764 CD4_CTL L2
ENSG00000162607 USP1 793337 sc-eQTL 1.90e-01 -0.127 0.0966 0.764 CD4_CTL L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 3.19e-01 0.0964 0.0966 0.764 CD4_CTL L2
ENSG00000079739 PGM1 -363777 sc-eQTL 1.76e-01 0.108 0.0797 0.759 CD4_Naive L2
ENSG00000088035 ALG6 -137941 sc-eQTL 5.10e-01 0.0574 0.0868 0.759 CD4_Naive L2
ENSG00000116641 DOCK7 541248 sc-eQTL 2.05e-01 -0.108 0.0851 0.759 CD4_Naive L2
ENSG00000125703 ATG4C 445502 sc-eQTL 4.73e-01 -0.0542 0.0754 0.759 CD4_Naive L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 3.41e-02 -0.195 0.0913 0.759 CD4_Naive L2
ENSG00000162607 USP1 793337 sc-eQTL 6.09e-01 -0.0361 0.0705 0.759 CD4_Naive L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 3.01e-01 -0.0947 0.0914 0.759 CD4_Naive L2
ENSG00000079739 PGM1 -363777 sc-eQTL 4.70e-01 -0.0598 0.0826 0.759 CD4_TCM L2
ENSG00000088035 ALG6 -137941 sc-eQTL 9.11e-01 0.0107 0.096 0.759 CD4_TCM L2
ENSG00000116641 DOCK7 541248 sc-eQTL 7.83e-01 -0.0234 0.0851 0.759 CD4_TCM L2
ENSG00000125703 ATG4C 445502 sc-eQTL 1.54e-01 0.118 0.0825 0.759 CD4_TCM L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.85e-01 -0.104 0.0974 0.759 CD4_TCM L2
ENSG00000162607 USP1 793337 sc-eQTL 5.65e-01 -0.0462 0.08 0.759 CD4_TCM L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.12e-01 -0.035 0.0945 0.759 CD4_TCM L2
ENSG00000079739 PGM1 -363777 sc-eQTL 2.37e-01 -0.114 0.0963 0.759 CD4_TEM L2
ENSG00000088035 ALG6 -137941 sc-eQTL 5.21e-01 0.0623 0.097 0.759 CD4_TEM L2
ENSG00000116641 DOCK7 541248 sc-eQTL 5.07e-01 -0.0629 0.0946 0.759 CD4_TEM L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.05e-01 0.011 0.092 0.759 CD4_TEM L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 7.57e-01 -0.0294 0.0949 0.759 CD4_TEM L2
ENSG00000162607 USP1 793337 sc-eQTL 6.08e-01 0.0461 0.0899 0.759 CD4_TEM L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 8.62e-02 0.168 0.0977 0.759 CD4_TEM L2
ENSG00000079739 PGM1 -363777 sc-eQTL 4.67e-01 -0.0646 0.0886 0.759 CD8_CTL L2
ENSG00000088035 ALG6 -137941 sc-eQTL 8.86e-01 -0.0136 0.0944 0.759 CD8_CTL L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.48e-01 0.0172 0.0895 0.759 CD8_CTL L2
ENSG00000125703 ATG4C 445502 sc-eQTL 6.93e-01 -0.0377 0.0953 0.759 CD8_CTL L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 8.75e-01 -0.0155 0.0991 0.759 CD8_CTL L2
ENSG00000162607 USP1 793337 sc-eQTL 8.82e-01 -0.0132 0.0888 0.759 CD8_CTL L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 3.44e-01 0.0962 0.101 0.759 CD8_CTL L2
ENSG00000079739 PGM1 -363777 sc-eQTL 5.88e-01 0.0486 0.0896 0.759 CD8_Naive L2
ENSG00000088035 ALG6 -137941 sc-eQTL 1.16e-01 0.146 0.0922 0.759 CD8_Naive L2
ENSG00000116641 DOCK7 541248 sc-eQTL 3.40e-01 -0.0915 0.0957 0.759 CD8_Naive L2
ENSG00000125703 ATG4C 445502 sc-eQTL 6.27e-01 0.0448 0.092 0.759 CD8_Naive L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 1.43e-01 -0.136 0.0928 0.759 CD8_Naive L2
ENSG00000162607 USP1 793337 sc-eQTL 1.56e-01 -0.112 0.0784 0.759 CD8_Naive L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.58e-01 -0.0994 0.0876 0.759 CD8_Naive L2
ENSG00000079739 PGM1 -363777 sc-eQTL 6.82e-01 -0.0408 0.0997 0.752 CD8_TCM L2
ENSG00000088035 ALG6 -137941 sc-eQTL 6.84e-01 -0.0412 0.101 0.752 CD8_TCM L2
ENSG00000116641 DOCK7 541248 sc-eQTL 5.78e-02 0.186 0.0976 0.752 CD8_TCM L2
ENSG00000125703 ATG4C 445502 sc-eQTL 2.87e-02 0.219 0.0995 0.752 CD8_TCM L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 9.65e-02 -0.162 0.0972 0.752 CD8_TCM L2
ENSG00000162607 USP1 793337 sc-eQTL 1.94e-01 -0.122 0.0938 0.752 CD8_TCM L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.40e-01 0.0332 0.0998 0.752 CD8_TCM L2
ENSG00000079739 PGM1 -363777 sc-eQTL 9.32e-03 -0.264 0.1 0.76 CD8_TEM L2
ENSG00000088035 ALG6 -137941 sc-eQTL 9.43e-01 -0.00735 0.103 0.76 CD8_TEM L2
ENSG00000116641 DOCK7 541248 sc-eQTL 9.82e-01 0.00228 0.0995 0.76 CD8_TEM L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.38e-01 0.00743 0.0956 0.76 CD8_TEM L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 9.58e-01 0.0055 0.104 0.76 CD8_TEM L2
ENSG00000162607 USP1 793337 sc-eQTL 6.59e-01 0.0437 0.0987 0.76 CD8_TEM L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.37e-01 -0.062 0.1 0.76 CD8_TEM L2
ENSG00000079739 PGM1 -363777 sc-eQTL 1.88e-01 -0.126 0.0955 0.758 MAIT L2
ENSG00000088035 ALG6 -137941 sc-eQTL 7.17e-01 -0.0345 0.0949 0.758 MAIT L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.52e-01 0.017 0.0909 0.758 MAIT L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.92e-01 0.00092 0.0959 0.758 MAIT L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 3.71e-01 0.086 0.0959 0.758 MAIT L2
ENSG00000162607 USP1 793337 sc-eQTL 4.30e-01 0.0752 0.0952 0.758 MAIT L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 6.93e-01 0.0391 0.0989 0.758 MAIT L2
ENSG00000079739 PGM1 -363777 sc-eQTL 7.43e-01 0.032 0.0975 0.767 NK_CD56bright L2
ENSG00000088035 ALG6 -137941 sc-eQTL 9.51e-01 0.00613 0.1 0.767 NK_CD56bright L2
ENSG00000116641 DOCK7 541248 sc-eQTL 4.73e-01 0.0622 0.0865 0.767 NK_CD56bright L2
ENSG00000125703 ATG4C 445502 sc-eQTL 4.39e-01 0.0749 0.0966 0.767 NK_CD56bright L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 9.11e-01 0.0112 0.101 0.767 NK_CD56bright L2
ENSG00000162607 USP1 793337 sc-eQTL 1.68e-01 0.143 0.103 0.767 NK_CD56bright L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.74e-01 -0.0559 0.0993 0.767 NK_CD56bright L2
ENSG00000079739 PGM1 -363777 sc-eQTL 3.90e-01 -0.0647 0.0751 0.761 NK_CD56dim L2
ENSG00000088035 ALG6 -137941 sc-eQTL 3.70e-01 -0.0856 0.0953 0.761 NK_CD56dim L2
ENSG00000116641 DOCK7 541248 sc-eQTL 4.56e-01 -0.062 0.083 0.761 NK_CD56dim L2
ENSG00000125703 ATG4C 445502 sc-eQTL 1.28e-01 0.128 0.0839 0.761 NK_CD56dim L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 4.72e-01 -0.0691 0.0959 0.761 NK_CD56dim L2
ENSG00000162607 USP1 793337 sc-eQTL 3.68e-01 -0.0838 0.0929 0.761 NK_CD56dim L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 3.38e-01 -0.0993 0.103 0.761 NK_CD56dim L2
ENSG00000079739 PGM1 -363777 sc-eQTL 8.32e-01 0.0223 0.105 0.756 NK_HLA L2
ENSG00000088035 ALG6 -137941 sc-eQTL 1.86e-01 0.145 0.109 0.756 NK_HLA L2
ENSG00000116641 DOCK7 541248 sc-eQTL 5.32e-01 -0.0523 0.0835 0.756 NK_HLA L2
ENSG00000125703 ATG4C 445502 sc-eQTL 8.23e-01 -0.0218 0.0973 0.756 NK_HLA L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 8.81e-01 0.0153 0.102 0.756 NK_HLA L2
ENSG00000162607 USP1 793337 sc-eQTL 5.69e-01 -0.0609 0.107 0.756 NK_HLA L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.39e-01 0.0324 0.0972 0.756 NK_HLA L2
ENSG00000079739 PGM1 -363777 sc-eQTL 1.31e-01 -0.124 0.0821 0.761 NK_cytokine L2
ENSG00000088035 ALG6 -137941 sc-eQTL 5.72e-01 0.0527 0.0932 0.761 NK_cytokine L2
ENSG00000116641 DOCK7 541248 sc-eQTL 2.61e-01 0.097 0.0861 0.761 NK_cytokine L2
ENSG00000125703 ATG4C 445502 sc-eQTL 4.94e-02 -0.173 0.0876 0.761 NK_cytokine L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.63e-01 -0.0529 0.0915 0.761 NK_cytokine L2
ENSG00000162607 USP1 793337 sc-eQTL 4.41e-01 0.0742 0.0961 0.761 NK_cytokine L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.15e-01 -0.0636 0.0974 0.761 NK_cytokine L2
ENSG00000079739 PGM1 -363777 sc-eQTL 7.93e-01 -0.031 0.118 0.763 PB L2
ENSG00000088035 ALG6 -137941 sc-eQTL 2.52e-01 0.142 0.123 0.763 PB L2
ENSG00000116641 DOCK7 541248 sc-eQTL 3.95e-01 -0.113 0.132 0.763 PB L2
ENSG00000125703 ATG4C 445502 sc-eQTL 7.16e-01 0.0422 0.116 0.763 PB L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 6.57e-01 0.0513 0.115 0.763 PB L2
ENSG00000162607 USP1 793337 sc-eQTL 4.59e-02 0.228 0.113 0.763 PB L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 9.66e-01 -0.00548 0.127 0.763 PB L2
ENSG00000079739 PGM1 -363777 sc-eQTL 2.55e-01 0.103 0.0899 0.757 Pro_T L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.40e-01 0.0708 0.0916 0.757 Pro_T L2
ENSG00000116641 DOCK7 541248 sc-eQTL 1.48e-01 -0.133 0.0916 0.757 Pro_T L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.66e-01 0.00341 0.0806 0.757 Pro_T L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 9.68e-01 -0.00329 0.0808 0.757 Pro_T L2
ENSG00000162607 USP1 793337 sc-eQTL 4.94e-01 0.038 0.0555 0.757 Pro_T L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 8.08e-01 0.0228 0.0939 0.757 Pro_T L2
ENSG00000079739 PGM1 -363777 sc-eQTL 1.84e-01 -0.126 0.0943 0.759 Treg L2
ENSG00000088035 ALG6 -137941 sc-eQTL 7.62e-02 0.179 0.101 0.759 Treg L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.12e-01 -0.0221 0.093 0.759 Treg L2
ENSG00000125703 ATG4C 445502 sc-eQTL 4.43e-01 0.073 0.0949 0.759 Treg L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 3.43e-01 -0.0943 0.0992 0.759 Treg L2
ENSG00000162607 USP1 793337 sc-eQTL 4.80e-01 0.068 0.0961 0.759 Treg L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.63e-01 0.106 0.0948 0.759 Treg L2
ENSG00000079739 PGM1 -363777 sc-eQTL 4.51e-01 0.0736 0.0974 0.766 cDC L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.31e-01 -0.078 0.0987 0.766 cDC L2
ENSG00000116641 DOCK7 541248 sc-eQTL 3.00e-01 -0.101 0.0968 0.766 cDC L2
ENSG00000125703 ATG4C 445502 sc-eQTL 2.29e-01 0.101 0.084 0.766 cDC L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 9.22e-01 0.0105 0.107 0.766 cDC L2
ENSG00000162607 USP1 793337 sc-eQTL 8.19e-01 -0.0218 0.0951 0.766 cDC L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 7.19e-01 -0.0309 0.0858 0.766 cDC L2
ENSG00000079739 PGM1 -363777 sc-eQTL 4.15e-01 -0.0727 0.089 0.759 cMono_IL1B L2
ENSG00000088035 ALG6 -137941 sc-eQTL 3.02e-01 0.0922 0.089 0.759 cMono_IL1B L2
ENSG00000116641 DOCK7 541248 sc-eQTL 2.40e-01 0.11 0.0938 0.759 cMono_IL1B L2
ENSG00000125703 ATG4C 445502 sc-eQTL 5.99e-01 0.0348 0.0661 0.759 cMono_IL1B L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.79e-01 -0.101 0.0935 0.759 cMono_IL1B L2
ENSG00000162607 USP1 793337 sc-eQTL 8.15e-02 -0.144 0.0821 0.759 cMono_IL1B L2
ENSG00000079739 PGM1 -363777 sc-eQTL 6.13e-01 -0.0504 0.0995 0.759 cMono_S100A L2
ENSG00000088035 ALG6 -137941 sc-eQTL 4.31e-01 0.0795 0.101 0.759 cMono_S100A L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.03e-01 0.0234 0.0935 0.759 cMono_S100A L2
ENSG00000125703 ATG4C 445502 sc-eQTL 1.78e-01 -0.109 0.0806 0.759 cMono_S100A L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 8.54e-02 -0.157 0.0907 0.759 cMono_S100A L2
ENSG00000162607 USP1 793337 sc-eQTL 6.50e-01 -0.0427 0.094 0.759 cMono_S100A L2
ENSG00000079739 PGM1 -363777 sc-eQTL 5.07e-01 -0.072 0.108 0.752 gdT L2
ENSG00000088035 ALG6 -137941 sc-eQTL 9.31e-01 0.00997 0.116 0.752 gdT L2
ENSG00000116641 DOCK7 541248 sc-eQTL 8.01e-01 0.0287 0.113 0.752 gdT L2
ENSG00000125703 ATG4C 445502 sc-eQTL 7.36e-01 -0.0365 0.108 0.752 gdT L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 5.50e-02 0.22 0.114 0.752 gdT L2
ENSG00000162607 USP1 793337 sc-eQTL 8.46e-01 -0.0211 0.109 0.752 gdT L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 8.84e-02 -0.192 0.112 0.752 gdT L2
ENSG00000079739 PGM1 -363777 sc-eQTL 1.87e-01 -0.13 0.0982 0.756 intMono L2
ENSG00000088035 ALG6 -137941 sc-eQTL 7.56e-01 0.0286 0.0918 0.756 intMono L2
ENSG00000116641 DOCK7 541248 sc-eQTL 7.75e-01 0.0269 0.0938 0.756 intMono L2
ENSG00000125703 ATG4C 445502 sc-eQTL 8.77e-01 -0.0139 0.0895 0.756 intMono L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 3.39e-01 -0.0944 0.0984 0.756 intMono L2
ENSG00000162607 USP1 793337 sc-eQTL 8.59e-01 0.0179 0.1 0.756 intMono L2
ENSG00000079739 PGM1 -363777 sc-eQTL 5.09e-01 0.0598 0.0903 0.762 ncMono L2
ENSG00000088035 ALG6 -137941 sc-eQTL 8.48e-01 0.0191 0.0993 0.762 ncMono L2
ENSG00000116641 DOCK7 541248 sc-eQTL 2.84e-01 0.105 0.0975 0.762 ncMono L2
ENSG00000125703 ATG4C 445502 sc-eQTL 6.01e-01 -0.0478 0.0913 0.762 ncMono L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 8.38e-02 -0.165 0.0948 0.762 ncMono L2
ENSG00000162607 USP1 793337 sc-eQTL 3.17e-01 0.0976 0.0974 0.762 ncMono L2
ENSG00000079739 PGM1 -363777 sc-eQTL 9.26e-01 0.00978 0.106 0.754 pDC L2
ENSG00000088035 ALG6 -137941 sc-eQTL 9.39e-02 0.172 0.102 0.754 pDC L2
ENSG00000116641 DOCK7 541248 sc-eQTL 6.71e-01 -0.0446 0.105 0.754 pDC L2
ENSG00000125703 ATG4C 445502 sc-eQTL 9.69e-01 0.00372 0.0942 0.754 pDC L2
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.83e-02 -0.23 0.104 0.754 pDC L2
ENSG00000162607 USP1 793337 sc-eQTL 7.56e-01 0.0336 0.108 0.754 pDC L2
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.54e-02 0.179 0.0925 0.754 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -363777 sc-eQTL 7.16e-01 -0.0332 0.0912 0.759 B_Memory LOneK1K
ENSG00000088035 ALG6 -137941 sc-eQTL 1.71e-01 -0.138 0.1 0.759 B_Memory LOneK1K
ENSG00000116641 DOCK7 541248 sc-eQTL 5.36e-01 0.0542 0.0874 0.759 B_Memory LOneK1K
ENSG00000125703 ATG4C 445502 sc-eQTL 2.87e-01 -0.0753 0.0706 0.759 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -364087 sc-eQTL 1.82e-02 -0.218 0.0917 0.759 B_Memory LOneK1K
ENSG00000162607 USP1 793337 sc-eQTL 4.73e-01 -0.0647 0.0901 0.759 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -293738 sc-eQTL 5.22e-01 -0.062 0.0968 0.759 B_Memory LOneK1K
ENSG00000079739 PGM1 -363777 sc-eQTL 9.95e-01 0.000653 0.0959 0.759 B_Naive LOneK1K
ENSG00000088035 ALG6 -137941 sc-eQTL 8.87e-01 -0.0141 0.0988 0.759 B_Naive LOneK1K
ENSG00000116641 DOCK7 541248 sc-eQTL 8.02e-01 -0.0231 0.0922 0.759 B_Naive LOneK1K
ENSG00000125703 ATG4C 445502 sc-eQTL 5.93e-01 -0.0376 0.0703 0.759 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.88e-01 -0.106 0.0992 0.759 B_Naive LOneK1K
ENSG00000162607 USP1 793337 sc-eQTL 3.66e-01 -0.0773 0.0853 0.759 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.96e-01 -0.105 0.0998 0.759 B_Naive LOneK1K
ENSG00000079739 PGM1 -363777 sc-eQTL 5.10e-01 -0.0605 0.0917 0.759 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -137941 sc-eQTL 1.86e-01 0.118 0.0885 0.759 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 541248 sc-eQTL 4.00e-01 0.0754 0.0894 0.759 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 445502 sc-eQTL 4.17e-01 -0.0503 0.0618 0.759 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -364087 sc-eQTL 8.67e-02 -0.156 0.0909 0.759 CD14_Mono LOneK1K
ENSG00000162607 USP1 793337 sc-eQTL 1.88e-01 -0.103 0.0779 0.759 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -363777 sc-eQTL 5.59e-01 -0.051 0.0872 0.756 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -137941 sc-eQTL 9.70e-01 0.00369 0.099 0.756 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 541248 sc-eQTL 7.26e-01 0.0344 0.098 0.756 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 445502 sc-eQTL 5.66e-01 -0.048 0.0835 0.756 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -364087 sc-eQTL 2.29e-01 -0.117 0.0967 0.756 CD16_Mono LOneK1K
ENSG00000162607 USP1 793337 sc-eQTL 2.24e-01 0.111 0.0908 0.756 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -363777 sc-eQTL 1.00e-01 -0.121 0.0734 0.761 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -137941 sc-eQTL 7.34e-01 0.0302 0.0886 0.761 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 541248 sc-eQTL 6.36e-01 0.0376 0.0794 0.761 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 445502 sc-eQTL 7.38e-01 -0.0266 0.0793 0.761 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -364087 sc-eQTL 3.18e-01 -0.0938 0.0937 0.761 NK_CD56dim LOneK1K
ENSG00000162607 USP1 793337 sc-eQTL 4.70e-01 -0.0617 0.0852 0.761 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -293738 sc-eQTL 2.33e-01 -0.124 0.103 0.761 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142856 ITGB3BP -364087 eQTL 4.54e-05 -0.141 0.0343 0.0 0.0 0.224
ENSG00000185483 ROR1 -544383 pQTL 0.0256 -0.0348 0.0156 0.0 0.0 0.226

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -137941 4.2e-06 4.65e-06 7.5e-07 2.79e-06 1.71e-06 1.47e-06 4.23e-06 1.11e-06 5.17e-06 2.45e-06 4.91e-06 3.43e-06 7.07e-06 2.38e-06 1.43e-06 3.89e-06 2.07e-06 3.51e-06 1.45e-06 1.25e-06 2.78e-06 4.79e-06 4.13e-06 1.99e-06 5.93e-06 2.07e-06 2.45e-06 1.79e-06 4.58e-06 4.13e-06 2.68e-06 4.69e-07 6.85e-07 2.39e-06 2.23e-06 1.33e-06 1.27e-06 4.57e-07 9.81e-07 7.13e-07 1.03e-06 5.47e-06 4.02e-07 1.79e-07 7.81e-07 1.32e-06 1.13e-06 6.72e-07 5.96e-07
ENSG00000142856 ITGB3BP -364087 1.31e-06 9.23e-07 3.12e-07 6.31e-07 3.23e-07 4.59e-07 1.34e-06 4.1e-07 1.49e-06 4.66e-07 1.56e-06 6.43e-07 2.02e-06 2.9e-07 5.51e-07 9.2e-07 7.87e-07 6.8e-07 8.48e-07 6.86e-07 6.51e-07 1.42e-06 8.91e-07 6.35e-07 1.95e-06 6.58e-07 8.34e-07 7.68e-07 1.28e-06 1.1e-06 6.16e-07 1.73e-07 2.29e-07 6.67e-07 4.49e-07 4.77e-07 6.81e-07 1.46e-07 3.95e-07 3.24e-07 2.72e-07 1.51e-06 5.49e-08 1.93e-08 1.66e-07 1.34e-07 2.26e-07 8.87e-08 1.23e-07
ENSG00000230798 \N -94807 5.75e-06 5.54e-06 1.26e-06 3.88e-06 2.18e-06 2.1e-06 8.61e-06 1.75e-06 5.24e-06 3.43e-06 8.05e-06 3.23e-06 1.05e-05 2.44e-06 1.21e-06 5.33e-06 3.34e-06 3.8e-06 2.58e-06 2.64e-06 3.72e-06 7.11e-06 5.44e-06 3.2e-06 9.1e-06 2.92e-06 3.73e-06 2.11e-06 6.95e-06 7.53e-06 3.28e-06 1.07e-06 1.22e-06 3.31e-06 2.44e-06 2.56e-06 1.82e-06 1.57e-06 2.01e-06 9.53e-07 1.28e-06 8.39e-06 9.1e-07 2.85e-07 9.19e-07 1.42e-06 1.19e-06 7.48e-07 4.81e-07