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Genes within 1Mb (chr1:63225501:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -367910 sc-eQTL 4.63e-01 0.0544 0.074 0.667 B L1
ENSG00000088035 ALG6 -142074 sc-eQTL 3.28e-03 0.224 0.0752 0.667 B L1
ENSG00000116641 DOCK7 537115 sc-eQTL 8.92e-01 0.0104 0.0767 0.667 B L1
ENSG00000125703 ATG4C 441369 sc-eQTL 8.65e-01 -0.00911 0.0533 0.667 B L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 4.43e-01 0.0652 0.0848 0.667 B L1
ENSG00000162607 USP1 789204 sc-eQTL 5.71e-01 0.0417 0.0736 0.667 B L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 2.10e-01 -0.109 0.0866 0.667 B L1
ENSG00000079739 PGM1 -367910 sc-eQTL 6.21e-01 0.0316 0.0638 0.667 CD4T L1
ENSG00000088035 ALG6 -142074 sc-eQTL 7.32e-01 -0.0242 0.0704 0.667 CD4T L1
ENSG00000116641 DOCK7 537115 sc-eQTL 3.70e-01 -0.0639 0.0712 0.667 CD4T L1
ENSG00000125703 ATG4C 441369 sc-eQTL 7.41e-01 -0.019 0.0576 0.667 CD4T L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 5.70e-01 0.0465 0.0817 0.667 CD4T L1
ENSG00000162607 USP1 789204 sc-eQTL 8.05e-01 0.0138 0.0559 0.667 CD4T L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 8.81e-01 0.011 0.0734 0.667 CD4T L1
ENSG00000079739 PGM1 -367910 sc-eQTL 5.14e-01 -0.0459 0.0703 0.667 CD8T L1
ENSG00000088035 ALG6 -142074 sc-eQTL 6.16e-01 -0.039 0.0775 0.667 CD8T L1
ENSG00000116641 DOCK7 537115 sc-eQTL 2.52e-01 -0.0899 0.0783 0.667 CD8T L1
ENSG00000125703 ATG4C 441369 sc-eQTL 8.72e-02 0.127 0.0741 0.667 CD8T L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.56e-01 0.026 0.0834 0.667 CD8T L1
ENSG00000162607 USP1 789204 sc-eQTL 9.80e-01 -0.00161 0.065 0.667 CD8T L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 5.49e-01 0.0499 0.0831 0.667 CD8T L1
ENSG00000079739 PGM1 -367910 sc-eQTL 8.66e-01 0.0133 0.0791 0.664 DC L1
ENSG00000088035 ALG6 -142074 sc-eQTL 4.66e-01 0.0595 0.0815 0.664 DC L1
ENSG00000116641 DOCK7 537115 sc-eQTL 2.51e-02 -0.186 0.0826 0.664 DC L1
ENSG00000125703 ATG4C 441369 sc-eQTL 9.44e-01 -0.00464 0.0654 0.664 DC L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 6.24e-01 -0.0449 0.0914 0.664 DC L1
ENSG00000162607 USP1 789204 sc-eQTL 9.62e-01 0.00384 0.0799 0.664 DC L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.31e-01 -0.00694 0.0796 0.664 DC L1
ENSG00000079739 PGM1 -367910 sc-eQTL 9.10e-01 -0.00859 0.076 0.667 Mono L1
ENSG00000088035 ALG6 -142074 sc-eQTL 3.44e-01 0.0751 0.0791 0.667 Mono L1
ENSG00000116641 DOCK7 537115 sc-eQTL 2.70e-01 -0.0845 0.0765 0.667 Mono L1
ENSG00000125703 ATG4C 441369 sc-eQTL 3.91e-01 -0.0444 0.0517 0.667 Mono L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 1.47e-01 -0.118 0.0815 0.667 Mono L1
ENSG00000162607 USP1 789204 sc-eQTL 8.86e-01 0.00967 0.0673 0.667 Mono L1
ENSG00000079739 PGM1 -367910 sc-eQTL 2.23e-02 -0.15 0.0651 0.665 NK L1
ENSG00000088035 ALG6 -142074 sc-eQTL 8.00e-01 -0.0196 0.0772 0.665 NK L1
ENSG00000116641 DOCK7 537115 sc-eQTL 9.72e-01 -0.00226 0.0636 0.665 NK L1
ENSG00000125703 ATG4C 441369 sc-eQTL 2.98e-01 0.0712 0.0681 0.665 NK L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 1.06e-01 0.137 0.0844 0.665 NK L1
ENSG00000162607 USP1 789204 sc-eQTL 5.51e-01 -0.0453 0.0758 0.665 NK L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 5.47e-01 0.0556 0.0921 0.665 NK L1
ENSG00000079739 PGM1 -367910 sc-eQTL 7.55e-01 0.0236 0.0755 0.667 Other_T L1
ENSG00000088035 ALG6 -142074 sc-eQTL 4.79e-01 0.0537 0.0758 0.667 Other_T L1
ENSG00000116641 DOCK7 537115 sc-eQTL 6.82e-01 0.0318 0.0774 0.667 Other_T L1
ENSG00000125703 ATG4C 441369 sc-eQTL 5.57e-01 0.0394 0.067 0.667 Other_T L1
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.07e-01 0.0607 0.0593 0.667 Other_T L1
ENSG00000162607 USP1 789204 sc-eQTL 3.94e-01 -0.0439 0.0514 0.667 Other_T L1
ENSG00000203965 EFCAB7 -297871 sc-eQTL 4.79e-01 0.065 0.0916 0.667 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -367910 sc-eQTL 9.03e-01 -0.0122 0.0999 0.663 B_Activated L2
ENSG00000088035 ALG6 -142074 sc-eQTL 9.15e-01 0.0103 0.0957 0.663 B_Activated L2
ENSG00000116641 DOCK7 537115 sc-eQTL 4.17e-01 -0.0724 0.0889 0.663 B_Activated L2
ENSG00000125703 ATG4C 441369 sc-eQTL 6.72e-01 -0.0397 0.0937 0.663 B_Activated L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 1.20e-01 -0.142 0.0909 0.663 B_Activated L2
ENSG00000162607 USP1 789204 sc-eQTL 7.31e-01 -0.0341 0.0992 0.663 B_Activated L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 4.13e-01 -0.071 0.0865 0.663 B_Activated L2
ENSG00000079739 PGM1 -367910 sc-eQTL 4.88e-01 0.0631 0.0909 0.665 B_Intermediate L2
ENSG00000088035 ALG6 -142074 sc-eQTL 4.96e-01 0.063 0.0923 0.665 B_Intermediate L2
ENSG00000116641 DOCK7 537115 sc-eQTL 4.94e-01 0.0604 0.0882 0.665 B_Intermediate L2
ENSG00000125703 ATG4C 441369 sc-eQTL 6.14e-02 -0.139 0.0741 0.665 B_Intermediate L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 9.75e-01 -0.00282 0.089 0.665 B_Intermediate L2
ENSG00000162607 USP1 789204 sc-eQTL 3.52e-01 0.0827 0.0887 0.665 B_Intermediate L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.87e-01 -0.00144 0.0882 0.665 B_Intermediate L2
ENSG00000079739 PGM1 -367910 sc-eQTL 8.45e-01 0.0174 0.0887 0.664 B_Memory L2
ENSG00000088035 ALG6 -142074 sc-eQTL 6.07e-03 0.246 0.0886 0.664 B_Memory L2
ENSG00000116641 DOCK7 537115 sc-eQTL 2.69e-01 0.0934 0.0843 0.664 B_Memory L2
ENSG00000125703 ATG4C 441369 sc-eQTL 2.30e-01 -0.0965 0.0801 0.664 B_Memory L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 8.19e-01 -0.0211 0.092 0.664 B_Memory L2
ENSG00000162607 USP1 789204 sc-eQTL 8.08e-02 0.162 0.0921 0.664 B_Memory L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 8.51e-01 -0.0172 0.0913 0.664 B_Memory L2
ENSG00000079739 PGM1 -367910 sc-eQTL 7.85e-01 0.024 0.0878 0.667 B_Naive1 L2
ENSG00000088035 ALG6 -142074 sc-eQTL 1.29e-02 0.218 0.0869 0.667 B_Naive1 L2
ENSG00000116641 DOCK7 537115 sc-eQTL 2.63e-01 -0.0946 0.0842 0.667 B_Naive1 L2
ENSG00000125703 ATG4C 441369 sc-eQTL 6.71e-01 -0.0276 0.0651 0.667 B_Naive1 L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.33e-01 0.0295 0.0863 0.667 B_Naive1 L2
ENSG00000162607 USP1 789204 sc-eQTL 9.16e-01 0.00803 0.0759 0.667 B_Naive1 L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 1.83e-01 -0.123 0.0917 0.667 B_Naive1 L2
ENSG00000079739 PGM1 -367910 sc-eQTL 6.76e-02 0.158 0.0861 0.665 B_Naive2 L2
ENSG00000088035 ALG6 -142074 sc-eQTL 9.65e-01 0.00397 0.0905 0.665 B_Naive2 L2
ENSG00000116641 DOCK7 537115 sc-eQTL 4.49e-01 0.066 0.0869 0.665 B_Naive2 L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.60e-01 0.0488 0.0837 0.665 B_Naive2 L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 4.02e-01 0.0761 0.0907 0.665 B_Naive2 L2
ENSG00000162607 USP1 789204 sc-eQTL 3.20e-01 -0.0859 0.0863 0.665 B_Naive2 L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 7.63e-01 -0.0273 0.0904 0.665 B_Naive2 L2
ENSG00000079739 PGM1 -367910 sc-eQTL 4.37e-01 -0.0701 0.09 0.67 CD4_CTL L2
ENSG00000088035 ALG6 -142074 sc-eQTL 9.24e-01 0.00905 0.0953 0.67 CD4_CTL L2
ENSG00000116641 DOCK7 537115 sc-eQTL 5.75e-01 0.0467 0.0833 0.67 CD4_CTL L2
ENSG00000125703 ATG4C 441369 sc-eQTL 1.90e-02 -0.201 0.085 0.67 CD4_CTL L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.01e-01 -0.0953 0.092 0.67 CD4_CTL L2
ENSG00000162607 USP1 789204 sc-eQTL 4.54e-01 -0.0658 0.0876 0.67 CD4_CTL L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 2.61e-01 -0.0984 0.0873 0.67 CD4_CTL L2
ENSG00000079739 PGM1 -367910 sc-eQTL 3.21e-01 0.0717 0.0721 0.667 CD4_Naive L2
ENSG00000088035 ALG6 -142074 sc-eQTL 1.36e-01 -0.117 0.0781 0.667 CD4_Naive L2
ENSG00000116641 DOCK7 537115 sc-eQTL 3.57e-01 -0.0712 0.077 0.667 CD4_Naive L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.15e-01 -0.0445 0.0682 0.667 CD4_Naive L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 8.32e-01 0.0177 0.0834 0.667 CD4_Naive L2
ENSG00000162607 USP1 789204 sc-eQTL 9.24e-01 -0.00608 0.0637 0.667 CD4_Naive L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 6.35e-01 -0.0393 0.0827 0.667 CD4_Naive L2
ENSG00000079739 PGM1 -367910 sc-eQTL 9.74e-01 -0.00244 0.0743 0.667 CD4_TCM L2
ENSG00000088035 ALG6 -142074 sc-eQTL 4.22e-01 0.0692 0.0861 0.667 CD4_TCM L2
ENSG00000116641 DOCK7 537115 sc-eQTL 9.57e-01 0.00415 0.0764 0.667 CD4_TCM L2
ENSG00000125703 ATG4C 441369 sc-eQTL 1.72e-01 0.102 0.0741 0.667 CD4_TCM L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 9.11e-01 0.0098 0.0877 0.667 CD4_TCM L2
ENSG00000162607 USP1 789204 sc-eQTL 2.73e-01 0.0787 0.0717 0.667 CD4_TCM L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 7.10e-01 -0.0316 0.0849 0.667 CD4_TCM L2
ENSG00000079739 PGM1 -367910 sc-eQTL 2.14e-01 -0.11 0.0886 0.667 CD4_TEM L2
ENSG00000088035 ALG6 -142074 sc-eQTL 8.93e-02 0.151 0.0887 0.667 CD4_TEM L2
ENSG00000116641 DOCK7 537115 sc-eQTL 7.39e-01 -0.0291 0.0871 0.667 CD4_TEM L2
ENSG00000125703 ATG4C 441369 sc-eQTL 3.17e-01 0.0846 0.0844 0.667 CD4_TEM L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.31e-02 0.156 0.0867 0.667 CD4_TEM L2
ENSG00000162607 USP1 789204 sc-eQTL 6.27e-01 -0.0403 0.0827 0.667 CD4_TEM L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 8.09e-01 0.0219 0.0905 0.667 CD4_TEM L2
ENSG00000079739 PGM1 -367910 sc-eQTL 1.09e-02 -0.202 0.0785 0.667 CD8_CTL L2
ENSG00000088035 ALG6 -142074 sc-eQTL 9.70e-01 0.00319 0.0848 0.667 CD8_CTL L2
ENSG00000116641 DOCK7 537115 sc-eQTL 7.34e-01 -0.0274 0.0805 0.667 CD8_CTL L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.56e-01 0.0504 0.0856 0.667 CD8_CTL L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 6.56e-01 0.0397 0.089 0.667 CD8_CTL L2
ENSG00000162607 USP1 789204 sc-eQTL 4.04e-01 0.0666 0.0797 0.667 CD8_CTL L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 1.45e-01 0.133 0.0908 0.667 CD8_CTL L2
ENSG00000079739 PGM1 -367910 sc-eQTL 6.13e-01 -0.041 0.0811 0.667 CD8_Naive L2
ENSG00000088035 ALG6 -142074 sc-eQTL 4.44e-01 0.0643 0.0839 0.667 CD8_Naive L2
ENSG00000116641 DOCK7 537115 sc-eQTL 7.97e-01 0.0223 0.0868 0.667 CD8_Naive L2
ENSG00000125703 ATG4C 441369 sc-eQTL 8.33e-01 0.0176 0.0833 0.667 CD8_Naive L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.60e-01 0.0258 0.0844 0.667 CD8_Naive L2
ENSG00000162607 USP1 789204 sc-eQTL 1.85e-01 -0.0944 0.071 0.667 CD8_Naive L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 7.79e-01 0.0224 0.0795 0.667 CD8_Naive L2
ENSG00000079739 PGM1 -367910 sc-eQTL 6.92e-01 0.0365 0.0919 0.664 CD8_TCM L2
ENSG00000088035 ALG6 -142074 sc-eQTL 3.67e-02 -0.194 0.092 0.664 CD8_TCM L2
ENSG00000116641 DOCK7 537115 sc-eQTL 9.41e-01 -0.00668 0.0908 0.664 CD8_TCM L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.12e-01 0.061 0.0928 0.664 CD8_TCM L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 2.96e-01 -0.0943 0.09 0.664 CD8_TCM L2
ENSG00000162607 USP1 789204 sc-eQTL 5.94e-01 -0.0463 0.0868 0.664 CD8_TCM L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 3.43e-01 0.0873 0.0918 0.664 CD8_TCM L2
ENSG00000079739 PGM1 -367910 sc-eQTL 5.37e-01 0.0563 0.0911 0.669 CD8_TEM L2
ENSG00000088035 ALG6 -142074 sc-eQTL 5.92e-01 0.0491 0.0914 0.669 CD8_TEM L2
ENSG00000116641 DOCK7 537115 sc-eQTL 8.38e-01 -0.0181 0.0887 0.669 CD8_TEM L2
ENSG00000125703 ATG4C 441369 sc-eQTL 3.30e-01 0.0831 0.0851 0.669 CD8_TEM L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 9.39e-01 -0.00707 0.0923 0.669 CD8_TEM L2
ENSG00000162607 USP1 789204 sc-eQTL 8.89e-01 0.0123 0.0881 0.669 CD8_TEM L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 6.58e-01 0.0397 0.0895 0.669 CD8_TEM L2
ENSG00000079739 PGM1 -367910 sc-eQTL 7.81e-01 0.0237 0.0853 0.667 MAIT L2
ENSG00000088035 ALG6 -142074 sc-eQTL 6.42e-01 0.0393 0.0844 0.667 MAIT L2
ENSG00000116641 DOCK7 537115 sc-eQTL 5.83e-01 0.0444 0.0808 0.667 MAIT L2
ENSG00000125703 ATG4C 441369 sc-eQTL 4.74e-01 -0.0611 0.0852 0.667 MAIT L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.12e-02 0.183 0.0845 0.667 MAIT L2
ENSG00000162607 USP1 789204 sc-eQTL 6.98e-02 0.153 0.0841 0.667 MAIT L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 3.73e-02 0.182 0.0871 0.667 MAIT L2
ENSG00000079739 PGM1 -367910 sc-eQTL 7.57e-01 -0.0269 0.0869 0.669 NK_CD56bright L2
ENSG00000088035 ALG6 -142074 sc-eQTL 6.52e-01 -0.0403 0.0891 0.669 NK_CD56bright L2
ENSG00000116641 DOCK7 537115 sc-eQTL 5.42e-01 0.0471 0.0771 0.669 NK_CD56bright L2
ENSG00000125703 ATG4C 441369 sc-eQTL 1.70e-01 0.118 0.0858 0.669 NK_CD56bright L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 1.63e-01 0.125 0.0894 0.669 NK_CD56bright L2
ENSG00000162607 USP1 789204 sc-eQTL 2.62e-01 -0.104 0.0923 0.669 NK_CD56bright L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 2.83e-01 0.095 0.0883 0.669 NK_CD56bright L2
ENSG00000079739 PGM1 -367910 sc-eQTL 6.47e-02 -0.125 0.0676 0.668 NK_CD56dim L2
ENSG00000088035 ALG6 -142074 sc-eQTL 6.44e-01 -0.04 0.0864 0.668 NK_CD56dim L2
ENSG00000116641 DOCK7 537115 sc-eQTL 9.43e-01 0.00542 0.0752 0.668 NK_CD56dim L2
ENSG00000125703 ATG4C 441369 sc-eQTL 8.55e-02 0.131 0.0759 0.668 NK_CD56dim L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.24e-01 0.0858 0.0867 0.668 NK_CD56dim L2
ENSG00000162607 USP1 789204 sc-eQTL 8.03e-01 -0.0211 0.0843 0.668 NK_CD56dim L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 4.16e-01 0.0765 0.0938 0.668 NK_CD56dim L2
ENSG00000079739 PGM1 -367910 sc-eQTL 7.80e-01 -0.0263 0.0941 0.66 NK_HLA L2
ENSG00000088035 ALG6 -142074 sc-eQTL 8.82e-01 0.0145 0.0976 0.66 NK_HLA L2
ENSG00000116641 DOCK7 537115 sc-eQTL 7.04e-01 0.0284 0.0746 0.66 NK_HLA L2
ENSG00000125703 ATG4C 441369 sc-eQTL 3.12e-01 -0.0878 0.0866 0.66 NK_HLA L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.33e-01 0.0311 0.0911 0.66 NK_HLA L2
ENSG00000162607 USP1 789204 sc-eQTL 2.45e-01 -0.111 0.095 0.66 NK_HLA L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.86e-01 -0.00149 0.0868 0.66 NK_HLA L2
ENSG00000079739 PGM1 -367910 sc-eQTL 2.36e-01 -0.0893 0.0752 0.668 NK_cytokine L2
ENSG00000088035 ALG6 -142074 sc-eQTL 8.26e-01 -0.0187 0.0853 0.668 NK_cytokine L2
ENSG00000116641 DOCK7 537115 sc-eQTL 9.22e-01 0.0077 0.079 0.668 NK_cytokine L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.95e-01 -0.043 0.0807 0.668 NK_cytokine L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.34e-01 0.0809 0.0835 0.668 NK_cytokine L2
ENSG00000162607 USP1 789204 sc-eQTL 6.05e-01 0.0455 0.0879 0.668 NK_cytokine L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.88e-01 -0.00132 0.0892 0.668 NK_cytokine L2
ENSG00000079739 PGM1 -367910 sc-eQTL 6.65e-01 0.0454 0.105 0.689 PB L2
ENSG00000088035 ALG6 -142074 sc-eQTL 4.10e-01 0.0907 0.11 0.689 PB L2
ENSG00000116641 DOCK7 537115 sc-eQTL 5.77e-01 0.0657 0.117 0.689 PB L2
ENSG00000125703 ATG4C 441369 sc-eQTL 9.72e-02 -0.169 0.101 0.689 PB L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 8.91e-01 -0.0141 0.102 0.689 PB L2
ENSG00000162607 USP1 789204 sc-eQTL 5.27e-01 0.0645 0.102 0.689 PB L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 4.98e-01 0.0762 0.112 0.689 PB L2
ENSG00000079739 PGM1 -367910 sc-eQTL 8.19e-01 -0.0184 0.0801 0.667 Pro_T L2
ENSG00000088035 ALG6 -142074 sc-eQTL 6.21e-02 0.152 0.0808 0.667 Pro_T L2
ENSG00000116641 DOCK7 537115 sc-eQTL 6.46e-01 0.0376 0.0818 0.667 Pro_T L2
ENSG00000125703 ATG4C 441369 sc-eQTL 4.74e-01 0.0513 0.0715 0.667 Pro_T L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 8.99e-01 -0.00914 0.0718 0.667 Pro_T L2
ENSG00000162607 USP1 789204 sc-eQTL 6.09e-01 -0.0253 0.0494 0.667 Pro_T L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.36e-01 -0.00668 0.0834 0.667 Pro_T L2
ENSG00000079739 PGM1 -367910 sc-eQTL 4.55e-01 -0.0633 0.0846 0.667 Treg L2
ENSG00000088035 ALG6 -142074 sc-eQTL 7.89e-01 -0.0243 0.0906 0.667 Treg L2
ENSG00000116641 DOCK7 537115 sc-eQTL 3.94e-01 -0.0709 0.083 0.667 Treg L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.50e-01 -0.0509 0.0849 0.667 Treg L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.48e-01 0.0286 0.0889 0.667 Treg L2
ENSG00000162607 USP1 789204 sc-eQTL 1.60e-01 -0.121 0.0856 0.667 Treg L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 5.60e-01 0.0496 0.085 0.667 Treg L2
ENSG00000079739 PGM1 -367910 sc-eQTL 8.28e-01 -0.0184 0.0843 0.659 cDC L2
ENSG00000088035 ALG6 -142074 sc-eQTL 7.71e-01 0.0249 0.0855 0.659 cDC L2
ENSG00000116641 DOCK7 537115 sc-eQTL 3.27e-02 -0.178 0.0828 0.659 cDC L2
ENSG00000125703 ATG4C 441369 sc-eQTL 9.75e-01 0.00226 0.0729 0.659 cDC L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 4.08e-01 0.0765 0.0922 0.659 cDC L2
ENSG00000162607 USP1 789204 sc-eQTL 9.66e-01 0.00354 0.0822 0.659 cDC L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 6.23e-01 0.0365 0.0741 0.659 cDC L2
ENSG00000079739 PGM1 -367910 sc-eQTL 9.74e-01 0.00258 0.0785 0.667 cMono_IL1B L2
ENSG00000088035 ALG6 -142074 sc-eQTL 3.40e-01 0.075 0.0784 0.667 cMono_IL1B L2
ENSG00000116641 DOCK7 537115 sc-eQTL 4.30e-01 -0.0654 0.0827 0.667 cMono_IL1B L2
ENSG00000125703 ATG4C 441369 sc-eQTL 7.40e-01 0.0194 0.0582 0.667 cMono_IL1B L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 9.47e-01 -0.00544 0.0825 0.667 cMono_IL1B L2
ENSG00000162607 USP1 789204 sc-eQTL 8.03e-01 0.0182 0.0728 0.667 cMono_IL1B L2
ENSG00000079739 PGM1 -367910 sc-eQTL 8.09e-01 -0.0211 0.0874 0.667 cMono_S100A L2
ENSG00000088035 ALG6 -142074 sc-eQTL 8.24e-01 0.0197 0.0886 0.667 cMono_S100A L2
ENSG00000116641 DOCK7 537115 sc-eQTL 8.15e-01 0.0193 0.0821 0.667 cMono_S100A L2
ENSG00000125703 ATG4C 441369 sc-eQTL 9.04e-02 -0.12 0.0706 0.667 cMono_S100A L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 2.43e-02 -0.18 0.0793 0.667 cMono_S100A L2
ENSG00000162607 USP1 789204 sc-eQTL 2.04e-01 -0.105 0.0823 0.667 cMono_S100A L2
ENSG00000079739 PGM1 -367910 sc-eQTL 9.96e-01 0.000521 0.0985 0.652 gdT L2
ENSG00000088035 ALG6 -142074 sc-eQTL 5.30e-02 0.202 0.104 0.652 gdT L2
ENSG00000116641 DOCK7 537115 sc-eQTL 8.76e-01 0.0161 0.103 0.652 gdT L2
ENSG00000125703 ATG4C 441369 sc-eQTL 4.28e-03 0.278 0.0956 0.652 gdT L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.29e-01 0.0362 0.104 0.652 gdT L2
ENSG00000162607 USP1 789204 sc-eQTL 2.60e-01 -0.111 0.0985 0.652 gdT L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 2.99e-01 -0.107 0.102 0.652 gdT L2
ENSG00000079739 PGM1 -367910 sc-eQTL 9.88e-01 -0.00131 0.0869 0.662 intMono L2
ENSG00000088035 ALG6 -142074 sc-eQTL 7.42e-01 -0.0266 0.0809 0.662 intMono L2
ENSG00000116641 DOCK7 537115 sc-eQTL 8.91e-01 0.0113 0.0826 0.662 intMono L2
ENSG00000125703 ATG4C 441369 sc-eQTL 7.92e-01 -0.0209 0.0789 0.662 intMono L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 6.18e-01 -0.0433 0.0868 0.662 intMono L2
ENSG00000162607 USP1 789204 sc-eQTL 8.66e-01 0.015 0.0884 0.662 intMono L2
ENSG00000079739 PGM1 -367910 sc-eQTL 3.60e-01 -0.0735 0.0802 0.658 ncMono L2
ENSG00000088035 ALG6 -142074 sc-eQTL 3.00e-01 0.0915 0.088 0.658 ncMono L2
ENSG00000116641 DOCK7 537115 sc-eQTL 5.58e-01 -0.0509 0.0868 0.658 ncMono L2
ENSG00000125703 ATG4C 441369 sc-eQTL 4.01e-01 -0.0682 0.081 0.658 ncMono L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 4.80e-01 -0.06 0.0848 0.658 ncMono L2
ENSG00000162607 USP1 789204 sc-eQTL 3.64e-02 0.181 0.0858 0.658 ncMono L2
ENSG00000079739 PGM1 -367910 sc-eQTL 4.94e-01 0.0654 0.0954 0.633 pDC L2
ENSG00000088035 ALG6 -142074 sc-eQTL 7.00e-01 0.0359 0.093 0.633 pDC L2
ENSG00000116641 DOCK7 537115 sc-eQTL 3.28e-01 -0.093 0.0947 0.633 pDC L2
ENSG00000125703 ATG4C 441369 sc-eQTL 5.47e-01 0.0514 0.0851 0.633 pDC L2
ENSG00000142856 ITGB3BP -368220 sc-eQTL 7.40e-01 -0.0318 0.0957 0.633 pDC L2
ENSG00000162607 USP1 789204 sc-eQTL 7.32e-01 0.0334 0.0975 0.633 pDC L2
ENSG00000203965 EFCAB7 -297871 sc-eQTL 4.99e-01 -0.0574 0.0846 0.633 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -367910 sc-eQTL 7.61e-01 0.0255 0.0837 0.667 B_Memory LOneK1K
ENSG00000088035 ALG6 -142074 sc-eQTL 3.54e-02 0.194 0.0916 0.667 B_Memory LOneK1K
ENSG00000116641 DOCK7 537115 sc-eQTL 3.51e-01 0.075 0.0802 0.667 B_Memory LOneK1K
ENSG00000125703 ATG4C 441369 sc-eQTL 2.33e-02 -0.147 0.0642 0.667 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -368220 sc-eQTL 6.47e-01 -0.0392 0.0853 0.667 B_Memory LOneK1K
ENSG00000162607 USP1 789204 sc-eQTL 1.39e-01 0.122 0.0824 0.667 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -297871 sc-eQTL 8.32e-01 -0.0189 0.0889 0.667 B_Memory LOneK1K
ENSG00000079739 PGM1 -367910 sc-eQTL 1.12e-01 0.136 0.0855 0.667 B_Naive LOneK1K
ENSG00000088035 ALG6 -142074 sc-eQTL 3.94e-02 0.182 0.0877 0.667 B_Naive LOneK1K
ENSG00000116641 DOCK7 537115 sc-eQTL 4.14e-01 -0.0676 0.0826 0.667 B_Naive LOneK1K
ENSG00000125703 ATG4C 441369 sc-eQTL 8.12e-01 0.015 0.0631 0.667 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.52e-01 0.0831 0.089 0.667 B_Naive LOneK1K
ENSG00000162607 USP1 789204 sc-eQTL 9.26e-01 -0.00715 0.0767 0.667 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -297871 sc-eQTL 2.57e-01 -0.102 0.0894 0.667 B_Naive LOneK1K
ENSG00000079739 PGM1 -367910 sc-eQTL 8.39e-01 -0.0163 0.0805 0.667 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -142074 sc-eQTL 2.63e-01 0.0873 0.0777 0.667 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 537115 sc-eQTL 5.69e-01 -0.0447 0.0784 0.667 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 441369 sc-eQTL 3.71e-01 -0.0486 0.0542 0.667 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -368220 sc-eQTL 2.77e-01 -0.0873 0.0801 0.667 CD14_Mono LOneK1K
ENSG00000162607 USP1 789204 sc-eQTL 4.88e-01 -0.0476 0.0685 0.667 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -367910 sc-eQTL 9.28e-01 0.0069 0.0763 0.666 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -142074 sc-eQTL 4.63e-01 0.0636 0.0865 0.666 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 537115 sc-eQTL 7.44e-01 -0.028 0.0857 0.666 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 441369 sc-eQTL 4.36e-01 -0.057 0.0729 0.666 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -368220 sc-eQTL 3.10e-01 -0.0861 0.0846 0.666 CD16_Mono LOneK1K
ENSG00000162607 USP1 789204 sc-eQTL 7.57e-02 0.141 0.0791 0.666 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -367910 sc-eQTL 1.72e-02 -0.159 0.0662 0.668 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -142074 sc-eQTL 8.24e-01 -0.018 0.0806 0.668 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 537115 sc-eQTL 7.74e-01 -0.0208 0.0722 0.668 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 441369 sc-eQTL 3.68e-01 0.0649 0.0719 0.668 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -368220 sc-eQTL 2.30e-01 0.102 0.0851 0.668 NK_CD56dim LOneK1K
ENSG00000162607 USP1 789204 sc-eQTL 8.53e-01 -0.0143 0.0775 0.668 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -297871 sc-eQTL 9.80e-01 0.00231 0.0943 0.668 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 -142074 eQTL 0.00394 -0.0408 0.0141 0.00156 0.0 0.34

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina