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Genes within 1Mb (chr1:63194695:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -398716 sc-eQTL 4.38e-01 -0.0618 0.0796 0.342 B L1
ENSG00000088035 ALG6 -172880 sc-eQTL 7.96e-01 0.0214 0.0826 0.342 B L1
ENSG00000116641 DOCK7 506309 sc-eQTL 1.06e-01 -0.133 0.0821 0.342 B L1
ENSG00000125703 ATG4C 410563 sc-eQTL 2.27e-01 -0.0692 0.0572 0.342 B L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.70e-01 0.0389 0.0913 0.342 B L1
ENSG00000162607 USP1 758398 sc-eQTL 2.16e-01 0.0981 0.079 0.342 B L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 1.03e-01 0.152 0.093 0.342 B L1
ENSG00000079739 PGM1 -398716 sc-eQTL 6.92e-01 0.0268 0.0675 0.342 CD4T L1
ENSG00000088035 ALG6 -172880 sc-eQTL 6.26e-01 -0.0364 0.0745 0.342 CD4T L1
ENSG00000116641 DOCK7 506309 sc-eQTL 7.29e-02 -0.135 0.0749 0.342 CD4T L1
ENSG00000125703 ATG4C 410563 sc-eQTL 4.20e-01 -0.0492 0.0608 0.342 CD4T L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.65e-01 0.0633 0.0864 0.342 CD4T L1
ENSG00000162607 USP1 758398 sc-eQTL 6.69e-01 -0.0253 0.0591 0.342 CD4T L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.46e-01 -0.0151 0.0776 0.342 CD4T L1
ENSG00000079739 PGM1 -398716 sc-eQTL 3.04e-01 -0.0762 0.074 0.342 CD8T L1
ENSG00000088035 ALG6 -172880 sc-eQTL 8.38e-01 0.0168 0.0817 0.342 CD8T L1
ENSG00000116641 DOCK7 506309 sc-eQTL 8.87e-01 -0.0118 0.0828 0.342 CD8T L1
ENSG00000125703 ATG4C 410563 sc-eQTL 1.10e-01 -0.125 0.0782 0.342 CD8T L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 5.41e-01 -0.0538 0.0879 0.342 CD8T L1
ENSG00000162607 USP1 758398 sc-eQTL 1.41e-01 0.101 0.0682 0.342 CD8T L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 1.54e-01 0.125 0.0873 0.342 CD8T L1
ENSG00000079739 PGM1 -398716 sc-eQTL 1.79e-01 -0.114 0.0844 0.34 DC L1
ENSG00000088035 ALG6 -172880 sc-eQTL 3.62e-01 -0.0798 0.0873 0.34 DC L1
ENSG00000116641 DOCK7 506309 sc-eQTL 7.14e-01 -0.0329 0.0896 0.34 DC L1
ENSG00000125703 ATG4C 410563 sc-eQTL 4.92e-01 0.0483 0.0701 0.34 DC L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 8.42e-02 0.169 0.0973 0.34 DC L1
ENSG00000162607 USP1 758398 sc-eQTL 5.47e-02 0.164 0.0848 0.34 DC L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.56e-01 -0.097 0.0851 0.34 DC L1
ENSG00000079739 PGM1 -398716 sc-eQTL 7.64e-01 0.0246 0.0819 0.342 Mono L1
ENSG00000088035 ALG6 -172880 sc-eQTL 6.13e-01 -0.0433 0.0854 0.342 Mono L1
ENSG00000116641 DOCK7 506309 sc-eQTL 3.44e-01 0.0783 0.0825 0.342 Mono L1
ENSG00000125703 ATG4C 410563 sc-eQTL 3.92e-01 -0.0479 0.0558 0.342 Mono L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 1.97e-01 -0.114 0.0879 0.342 Mono L1
ENSG00000162607 USP1 758398 sc-eQTL 9.92e-01 -0.000702 0.0725 0.342 Mono L1
ENSG00000240563 L1TD1 999846 sc-eQTL 9.45e-01 0.00471 0.0677 0.342 Mono L1
ENSG00000079739 PGM1 -398716 sc-eQTL 4.25e-01 -0.0562 0.0702 0.339 NK L1
ENSG00000088035 ALG6 -172880 sc-eQTL 9.33e-01 0.00693 0.0825 0.339 NK L1
ENSG00000116641 DOCK7 506309 sc-eQTL 7.52e-02 0.121 0.0674 0.339 NK L1
ENSG00000125703 ATG4C 410563 sc-eQTL 9.31e-01 -0.00628 0.0729 0.339 NK L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 5.27e-01 -0.0574 0.0906 0.339 NK L1
ENSG00000162607 USP1 758398 sc-eQTL 8.97e-01 0.0104 0.081 0.339 NK L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.18e-01 0.0227 0.0984 0.339 NK L1
ENSG00000079739 PGM1 -398716 sc-eQTL 5.47e-01 -0.0477 0.0791 0.342 Other_T L1
ENSG00000088035 ALG6 -172880 sc-eQTL 8.41e-01 -0.0159 0.0796 0.342 Other_T L1
ENSG00000116641 DOCK7 506309 sc-eQTL 8.37e-01 0.0167 0.0812 0.342 Other_T L1
ENSG00000125703 ATG4C 410563 sc-eQTL 4.08e-02 -0.143 0.0696 0.342 Other_T L1
ENSG00000142856 ITGB3BP -399026 sc-eQTL 1.06e-01 -0.101 0.062 0.342 Other_T L1
ENSG00000162607 USP1 758398 sc-eQTL 7.83e-01 0.0149 0.054 0.342 Other_T L1
ENSG00000203965 EFCAB7 -328677 sc-eQTL 5.32e-01 0.0602 0.0961 0.342 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -398716 sc-eQTL 5.52e-01 -0.0623 0.105 0.365 B_Activated L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.25e-01 0.0638 0.1 0.365 B_Activated L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.76e-01 0.0523 0.0934 0.365 B_Activated L2
ENSG00000125703 ATG4C 410563 sc-eQTL 6.68e-01 -0.0423 0.0983 0.365 B_Activated L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 2.53e-01 0.11 0.0957 0.365 B_Activated L2
ENSG00000162607 USP1 758398 sc-eQTL 7.58e-01 0.0322 0.104 0.365 B_Activated L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 1.75e-01 0.123 0.0905 0.365 B_Activated L2
ENSG00000079739 PGM1 -398716 sc-eQTL 5.76e-01 0.0527 0.0943 0.343 B_Intermediate L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.85e-02 0.181 0.095 0.343 B_Intermediate L2
ENSG00000116641 DOCK7 506309 sc-eQTL 1.41e-01 -0.135 0.0911 0.343 B_Intermediate L2
ENSG00000125703 ATG4C 410563 sc-eQTL 8.09e-01 0.0188 0.0775 0.343 B_Intermediate L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.56e-01 -0.0852 0.0921 0.343 B_Intermediate L2
ENSG00000162607 USP1 758398 sc-eQTL 9.85e-01 -0.00168 0.0922 0.343 B_Intermediate L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 7.35e-01 0.0309 0.0914 0.343 B_Intermediate L2
ENSG00000079739 PGM1 -398716 sc-eQTL 6.91e-01 -0.038 0.0955 0.338 B_Memory L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.80e-01 -0.0538 0.0971 0.338 B_Memory L2
ENSG00000116641 DOCK7 506309 sc-eQTL 1.92e-01 -0.119 0.0908 0.338 B_Memory L2
ENSG00000125703 ATG4C 410563 sc-eQTL 7.48e-01 0.0278 0.0866 0.338 B_Memory L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.96e-01 0.0388 0.0991 0.338 B_Memory L2
ENSG00000162607 USP1 758398 sc-eQTL 9.44e-02 0.167 0.0993 0.338 B_Memory L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 3.51e-01 -0.0918 0.0982 0.338 B_Memory L2
ENSG00000079739 PGM1 -398716 sc-eQTL 1.64e-01 -0.132 0.0947 0.342 B_Naive1 L2
ENSG00000088035 ALG6 -172880 sc-eQTL 6.72e-01 -0.0404 0.0954 0.342 B_Naive1 L2
ENSG00000116641 DOCK7 506309 sc-eQTL 6.20e-01 -0.0454 0.0914 0.342 B_Naive1 L2
ENSG00000125703 ATG4C 410563 sc-eQTL 3.40e-01 -0.0672 0.0703 0.342 B_Naive1 L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.15e-01 0.0471 0.0934 0.342 B_Naive1 L2
ENSG00000162607 USP1 758398 sc-eQTL 6.63e-01 -0.0359 0.0822 0.342 B_Naive1 L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.74e-02 0.219 0.0986 0.342 B_Naive1 L2
ENSG00000079739 PGM1 -398716 sc-eQTL 7.38e-01 -0.0314 0.0937 0.339 B_Naive2 L2
ENSG00000088035 ALG6 -172880 sc-eQTL 8.86e-01 0.014 0.0977 0.339 B_Naive2 L2
ENSG00000116641 DOCK7 506309 sc-eQTL 8.14e-01 -0.0221 0.094 0.339 B_Naive2 L2
ENSG00000125703 ATG4C 410563 sc-eQTL 5.33e-01 -0.0565 0.0904 0.339 B_Naive2 L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 7.31e-01 0.0338 0.0981 0.339 B_Naive2 L2
ENSG00000162607 USP1 758398 sc-eQTL 3.54e-01 0.0865 0.0932 0.339 B_Naive2 L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 7.66e-01 0.0291 0.0976 0.339 B_Naive2 L2
ENSG00000079739 PGM1 -398716 sc-eQTL 1.72e-01 -0.131 0.0957 0.341 CD4_CTL L2
ENSG00000088035 ALG6 -172880 sc-eQTL 9.24e-01 -0.00973 0.102 0.341 CD4_CTL L2
ENSG00000116641 DOCK7 506309 sc-eQTL 8.96e-01 -0.0116 0.0889 0.341 CD4_CTL L2
ENSG00000125703 ATG4C 410563 sc-eQTL 2.98e-01 0.0957 0.0917 0.341 CD4_CTL L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 1.42e-02 0.24 0.0968 0.341 CD4_CTL L2
ENSG00000162607 USP1 758398 sc-eQTL 7.74e-01 0.0269 0.0936 0.341 CD4_CTL L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 1.51e-02 -0.226 0.092 0.341 CD4_CTL L2
ENSG00000079739 PGM1 -398716 sc-eQTL 7.94e-01 -0.0197 0.0754 0.342 CD4_Naive L2
ENSG00000088035 ALG6 -172880 sc-eQTL 4.57e-01 -0.061 0.0818 0.342 CD4_Naive L2
ENSG00000116641 DOCK7 506309 sc-eQTL 2.12e-03 -0.245 0.0788 0.342 CD4_Naive L2
ENSG00000125703 ATG4C 410563 sc-eQTL 5.45e-01 -0.0431 0.0711 0.342 CD4_Naive L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 9.65e-01 -0.00387 0.087 0.342 CD4_Naive L2
ENSG00000162607 USP1 758398 sc-eQTL 5.57e-01 -0.0391 0.0664 0.342 CD4_Naive L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 6.54e-01 -0.0387 0.0864 0.342 CD4_Naive L2
ENSG00000079739 PGM1 -398716 sc-eQTL 1.66e-01 0.109 0.0783 0.342 CD4_TCM L2
ENSG00000088035 ALG6 -172880 sc-eQTL 6.73e-01 0.0386 0.0913 0.342 CD4_TCM L2
ENSG00000116641 DOCK7 506309 sc-eQTL 2.18e-01 0.0995 0.0806 0.342 CD4_TCM L2
ENSG00000125703 ATG4C 410563 sc-eQTL 3.87e-01 -0.0681 0.0786 0.342 CD4_TCM L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.36e-01 0.0894 0.0927 0.342 CD4_TCM L2
ENSG00000162607 USP1 758398 sc-eQTL 3.51e-01 0.071 0.076 0.342 CD4_TCM L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 7.85e-01 0.0246 0.0898 0.342 CD4_TCM L2
ENSG00000079739 PGM1 -398716 sc-eQTL 9.52e-01 0.00568 0.0942 0.342 CD4_TEM L2
ENSG00000088035 ALG6 -172880 sc-eQTL 1.28e-01 -0.144 0.0942 0.342 CD4_TEM L2
ENSG00000116641 DOCK7 506309 sc-eQTL 7.95e-01 0.024 0.0923 0.342 CD4_TEM L2
ENSG00000125703 ATG4C 410563 sc-eQTL 2.48e-01 -0.104 0.0894 0.342 CD4_TEM L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.08e-02 0.173 0.0918 0.342 CD4_TEM L2
ENSG00000162607 USP1 758398 sc-eQTL 7.55e-01 -0.0274 0.0876 0.342 CD4_TEM L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 4.74e-01 -0.0686 0.0958 0.342 CD4_TEM L2
ENSG00000079739 PGM1 -398716 sc-eQTL 1.23e-01 -0.131 0.0847 0.342 CD8_CTL L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.14e-01 0.0591 0.0905 0.342 CD8_CTL L2
ENSG00000116641 DOCK7 506309 sc-eQTL 9.89e-01 0.00124 0.086 0.342 CD8_CTL L2
ENSG00000125703 ATG4C 410563 sc-eQTL 7.59e-01 0.0281 0.0915 0.342 CD8_CTL L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.56e-01 -0.0709 0.095 0.342 CD8_CTL L2
ENSG00000162607 USP1 758398 sc-eQTL 4.39e-01 0.0659 0.0851 0.342 CD8_CTL L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.25e-01 0.118 0.0971 0.342 CD8_CTL L2
ENSG00000079739 PGM1 -398716 sc-eQTL 7.05e-01 0.0329 0.0867 0.342 CD8_Naive L2
ENSG00000088035 ALG6 -172880 sc-eQTL 1.69e-01 -0.123 0.0894 0.342 CD8_Naive L2
ENSG00000116641 DOCK7 506309 sc-eQTL 7.82e-01 0.0257 0.0928 0.342 CD8_Naive L2
ENSG00000125703 ATG4C 410563 sc-eQTL 4.78e-01 -0.0633 0.089 0.342 CD8_Naive L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.10e-01 0.0744 0.0901 0.342 CD8_Naive L2
ENSG00000162607 USP1 758398 sc-eQTL 3.63e-01 0.0694 0.0761 0.342 CD8_Naive L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 3.92e-01 0.0729 0.0849 0.342 CD8_Naive L2
ENSG00000079739 PGM1 -398716 sc-eQTL 9.65e-01 -0.00421 0.0957 0.345 CD8_TCM L2
ENSG00000088035 ALG6 -172880 sc-eQTL 1.55e-01 -0.138 0.0964 0.345 CD8_TCM L2
ENSG00000116641 DOCK7 506309 sc-eQTL 6.62e-01 -0.0414 0.0945 0.345 CD8_TCM L2
ENSG00000125703 ATG4C 410563 sc-eQTL 9.40e-01 0.00727 0.0967 0.345 CD8_TCM L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.46e-01 -0.0885 0.0937 0.345 CD8_TCM L2
ENSG00000162607 USP1 758398 sc-eQTL 9.66e-01 -0.0039 0.0904 0.345 CD8_TCM L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 9.48e-02 0.16 0.0951 0.345 CD8_TCM L2
ENSG00000079739 PGM1 -398716 sc-eQTL 9.11e-01 -0.0109 0.0976 0.347 CD8_TEM L2
ENSG00000088035 ALG6 -172880 sc-eQTL 4.47e-01 -0.0746 0.0978 0.347 CD8_TEM L2
ENSG00000116641 DOCK7 506309 sc-eQTL 7.50e-01 -0.0303 0.095 0.347 CD8_TEM L2
ENSG00000125703 ATG4C 410563 sc-eQTL 3.14e-01 -0.092 0.0911 0.347 CD8_TEM L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 5.60e-01 -0.0576 0.0988 0.347 CD8_TEM L2
ENSG00000162607 USP1 758398 sc-eQTL 6.80e-01 0.0389 0.0943 0.347 CD8_TEM L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.36e-01 0.0199 0.0958 0.347 CD8_TEM L2
ENSG00000079739 PGM1 -398716 sc-eQTL 8.76e-01 -0.0143 0.0915 0.342 MAIT L2
ENSG00000088035 ALG6 -172880 sc-eQTL 6.92e-01 -0.0359 0.0906 0.342 MAIT L2
ENSG00000116641 DOCK7 506309 sc-eQTL 2.55e-01 -0.0988 0.0866 0.342 MAIT L2
ENSG00000125703 ATG4C 410563 sc-eQTL 1.38e-02 -0.224 0.0902 0.342 MAIT L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 7.96e-01 0.0237 0.0917 0.342 MAIT L2
ENSG00000162607 USP1 758398 sc-eQTL 7.57e-02 0.161 0.0903 0.342 MAIT L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.96e-01 -0.0987 0.0942 0.342 MAIT L2
ENSG00000079739 PGM1 -398716 sc-eQTL 6.32e-01 -0.0449 0.0935 0.34 NK_CD56bright L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.22e-01 0.0614 0.0958 0.34 NK_CD56bright L2
ENSG00000116641 DOCK7 506309 sc-eQTL 3.13e-01 0.0839 0.0829 0.34 NK_CD56bright L2
ENSG00000125703 ATG4C 410563 sc-eQTL 5.60e-01 0.0542 0.0928 0.34 NK_CD56bright L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 9.13e-01 0.0106 0.0967 0.34 NK_CD56bright L2
ENSG00000162607 USP1 758398 sc-eQTL 5.12e-01 -0.0654 0.0996 0.34 NK_CD56bright L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 3.70e-01 0.0854 0.0952 0.34 NK_CD56bright L2
ENSG00000079739 PGM1 -398716 sc-eQTL 2.29e-01 -0.0886 0.0734 0.336 NK_CD56dim L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.12e-01 0.0613 0.0934 0.336 NK_CD56dim L2
ENSG00000116641 DOCK7 506309 sc-eQTL 3.73e-01 0.0725 0.0812 0.336 NK_CD56dim L2
ENSG00000125703 ATG4C 410563 sc-eQTL 1.54e-01 -0.117 0.0822 0.336 NK_CD56dim L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.73e-01 -0.0675 0.0939 0.336 NK_CD56dim L2
ENSG00000162607 USP1 758398 sc-eQTL 8.61e-01 -0.016 0.0912 0.336 NK_CD56dim L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 9.83e-01 0.00213 0.102 0.336 NK_CD56dim L2
ENSG00000079739 PGM1 -398716 sc-eQTL 3.39e-01 0.0969 0.101 0.333 NK_HLA L2
ENSG00000088035 ALG6 -172880 sc-eQTL 9.67e-01 -0.0043 0.105 0.333 NK_HLA L2
ENSG00000116641 DOCK7 506309 sc-eQTL 7.45e-01 0.0261 0.0803 0.333 NK_HLA L2
ENSG00000125703 ATG4C 410563 sc-eQTL 6.59e-01 -0.0413 0.0934 0.333 NK_HLA L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.23e-01 -0.0971 0.0979 0.333 NK_HLA L2
ENSG00000162607 USP1 758398 sc-eQTL 6.01e-01 -0.0538 0.103 0.333 NK_HLA L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.10e-01 0.0225 0.0935 0.333 NK_HLA L2
ENSG00000079739 PGM1 -398716 sc-eQTL 2.65e-01 -0.0889 0.0795 0.336 NK_cytokine L2
ENSG00000088035 ALG6 -172880 sc-eQTL 8.71e-01 0.0147 0.0901 0.336 NK_cytokine L2
ENSG00000116641 DOCK7 506309 sc-eQTL 4.00e-01 0.0703 0.0834 0.336 NK_cytokine L2
ENSG00000125703 ATG4C 410563 sc-eQTL 7.06e-01 -0.0323 0.0854 0.336 NK_cytokine L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.36e-01 0.069 0.0883 0.336 NK_cytokine L2
ENSG00000162607 USP1 758398 sc-eQTL 8.52e-01 0.0173 0.093 0.336 NK_cytokine L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 6.36e-01 -0.0446 0.0942 0.336 NK_cytokine L2
ENSG00000079739 PGM1 -398716 sc-eQTL 3.96e-02 0.215 0.103 0.359 PB L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.70e-01 -0.0629 0.11 0.359 PB L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.69e-01 0.0673 0.118 0.359 PB L2
ENSG00000125703 ATG4C 410563 sc-eQTL 4.50e-04 -0.352 0.0974 0.359 PB L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 1.78e-01 -0.138 0.102 0.359 PB L2
ENSG00000162607 USP1 758398 sc-eQTL 8.39e-01 -0.0208 0.102 0.359 PB L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.00e-01 0.144 0.112 0.359 PB L2
ENSG00000079739 PGM1 -398716 sc-eQTL 3.51e-01 0.0794 0.085 0.341 Pro_T L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.76e-01 0.0486 0.0866 0.341 Pro_T L2
ENSG00000116641 DOCK7 506309 sc-eQTL 1.52e-01 0.125 0.0866 0.341 Pro_T L2
ENSG00000125703 ATG4C 410563 sc-eQTL 7.93e-01 -0.02 0.0761 0.341 Pro_T L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.34e-01 -0.0364 0.0763 0.341 Pro_T L2
ENSG00000162607 USP1 758398 sc-eQTL 8.19e-01 -0.0121 0.0525 0.341 Pro_T L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.99e-01 0.0922 0.0885 0.341 Pro_T L2
ENSG00000079739 PGM1 -398716 sc-eQTL 2.00e-01 0.116 0.0901 0.342 Treg L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.74e-01 0.0545 0.0967 0.342 Treg L2
ENSG00000116641 DOCK7 506309 sc-eQTL 3.44e-02 0.187 0.0879 0.342 Treg L2
ENSG00000125703 ATG4C 410563 sc-eQTL 3.40e-01 -0.0866 0.0906 0.342 Treg L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 7.38e-01 -0.0318 0.0949 0.342 Treg L2
ENSG00000162607 USP1 758398 sc-eQTL 1.42e-01 0.135 0.0914 0.342 Treg L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 1.03e-01 0.148 0.0903 0.342 Treg L2
ENSG00000079739 PGM1 -398716 sc-eQTL 1.04e-01 -0.15 0.0918 0.334 cDC L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.32e-01 -0.0587 0.0937 0.334 cDC L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.70e-01 0.0523 0.0919 0.334 cDC L2
ENSG00000125703 ATG4C 410563 sc-eQTL 3.02e-02 0.172 0.0789 0.334 cDC L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 7.40e-01 0.0336 0.101 0.334 cDC L2
ENSG00000162607 USP1 758398 sc-eQTL 7.25e-01 0.0318 0.0901 0.334 cDC L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.67e-01 0.0137 0.0814 0.334 cDC L2
ENSG00000079739 PGM1 -398716 sc-eQTL 5.38e-01 0.0525 0.0852 0.342 cMono_IL1B L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.86e-01 0.0466 0.0853 0.342 cMono_IL1B L2
ENSG00000116641 DOCK7 506309 sc-eQTL 8.02e-01 0.0226 0.09 0.342 cMono_IL1B L2
ENSG00000125703 ATG4C 410563 sc-eQTL 6.93e-01 -0.025 0.0633 0.342 cMono_IL1B L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 4.26e-01 -0.0714 0.0896 0.342 cMono_IL1B L2
ENSG00000162607 USP1 758398 sc-eQTL 1.56e-01 0.112 0.0787 0.342 cMono_IL1B L2
ENSG00000240563 L1TD1 999846 sc-eQTL 7.03e-01 0.0303 0.0794 0.342 cMono_IL1B L2
ENSG00000079739 PGM1 -398716 sc-eQTL 8.26e-01 -0.0209 0.0946 0.342 cMono_S100A L2
ENSG00000088035 ALG6 -172880 sc-eQTL 4.88e-01 -0.0665 0.0958 0.342 cMono_S100A L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.58e-01 0.0522 0.0888 0.342 cMono_S100A L2
ENSG00000125703 ATG4C 410563 sc-eQTL 5.89e-01 -0.0416 0.0769 0.342 cMono_S100A L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.61e-01 -0.0381 0.0868 0.342 cMono_S100A L2
ENSG00000162607 USP1 758398 sc-eQTL 7.87e-01 0.0242 0.0893 0.342 cMono_S100A L2
ENSG00000240563 L1TD1 999846 sc-eQTL 6.61e-01 -0.0326 0.0743 0.342 cMono_S100A L2
ENSG00000079739 PGM1 -398716 sc-eQTL 6.64e-01 0.0472 0.109 0.333 gdT L2
ENSG00000088035 ALG6 -172880 sc-eQTL 5.27e-02 -0.223 0.114 0.333 gdT L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.34e-01 -0.0708 0.113 0.333 gdT L2
ENSG00000125703 ATG4C 410563 sc-eQTL 9.22e-01 -0.0106 0.109 0.333 gdT L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.13e-01 -0.116 0.115 0.333 gdT L2
ENSG00000162607 USP1 758398 sc-eQTL 4.23e-01 0.0874 0.109 0.333 gdT L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 2.43e-02 0.254 0.111 0.333 gdT L2
ENSG00000079739 PGM1 -398716 sc-eQTL 6.47e-01 0.0441 0.0961 0.333 intMono L2
ENSG00000088035 ALG6 -172880 sc-eQTL 6.09e-01 -0.0458 0.0895 0.333 intMono L2
ENSG00000116641 DOCK7 506309 sc-eQTL 5.11e-01 -0.0603 0.0914 0.333 intMono L2
ENSG00000125703 ATG4C 410563 sc-eQTL 4.00e-01 -0.0736 0.0872 0.333 intMono L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 5.17e-01 -0.0624 0.0961 0.333 intMono L2
ENSG00000162607 USP1 758398 sc-eQTL 5.63e-02 0.186 0.097 0.333 intMono L2
ENSG00000240563 L1TD1 999846 sc-eQTL 3.98e-01 0.0608 0.0719 0.333 intMono L2
ENSG00000079739 PGM1 -398716 sc-eQTL 5.44e-01 -0.0517 0.0852 0.344 ncMono L2
ENSG00000088035 ALG6 -172880 sc-eQTL 3.92e-01 0.0802 0.0935 0.344 ncMono L2
ENSG00000116641 DOCK7 506309 sc-eQTL 4.08e-01 0.0763 0.092 0.344 ncMono L2
ENSG00000125703 ATG4C 410563 sc-eQTL 7.58e-01 0.0266 0.0861 0.344 ncMono L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 9.91e-01 -0.00104 0.0901 0.344 ncMono L2
ENSG00000162607 USP1 758398 sc-eQTL 6.99e-01 -0.0356 0.092 0.344 ncMono L2
ENSG00000240563 L1TD1 999846 sc-eQTL 4.06e-01 0.0542 0.0652 0.344 ncMono L2
ENSG00000079739 PGM1 -398716 sc-eQTL 3.16e-01 -0.111 0.11 0.336 pDC L2
ENSG00000088035 ALG6 -172880 sc-eQTL 7.65e-01 0.0322 0.107 0.336 pDC L2
ENSG00000116641 DOCK7 506309 sc-eQTL 2.87e-01 -0.117 0.109 0.336 pDC L2
ENSG00000125703 ATG4C 410563 sc-eQTL 1.29e-01 -0.149 0.0978 0.336 pDC L2
ENSG00000142856 ITGB3BP -399026 sc-eQTL 2.19e-01 0.136 0.11 0.336 pDC L2
ENSG00000162607 USP1 758398 sc-eQTL 2.17e-01 0.139 0.112 0.336 pDC L2
ENSG00000203965 EFCAB7 -328677 sc-eQTL 7.20e-01 -0.0352 0.0978 0.336 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -398716 sc-eQTL 5.93e-01 0.0474 0.0884 0.342 B_Memory LOneK1K
ENSG00000088035 ALG6 -172880 sc-eQTL 2.83e-01 0.105 0.0975 0.342 B_Memory LOneK1K
ENSG00000116641 DOCK7 506309 sc-eQTL 4.85e-01 -0.0593 0.0848 0.342 B_Memory LOneK1K
ENSG00000125703 ATG4C 410563 sc-eQTL 6.51e-01 0.0311 0.0686 0.342 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -399026 sc-eQTL 9.46e-01 -0.00617 0.0902 0.342 B_Memory LOneK1K
ENSG00000162607 USP1 758398 sc-eQTL 5.30e-01 0.0551 0.0875 0.342 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -328677 sc-eQTL 9.80e-01 -0.00234 0.0939 0.342 B_Memory LOneK1K
ENSG00000079739 PGM1 -398716 sc-eQTL 4.07e-01 -0.0769 0.0925 0.342 B_Naive LOneK1K
ENSG00000088035 ALG6 -172880 sc-eQTL 7.70e-01 -0.0279 0.0954 0.342 B_Naive LOneK1K
ENSG00000116641 DOCK7 506309 sc-eQTL 5.03e-01 -0.0598 0.089 0.342 B_Naive LOneK1K
ENSG00000125703 ATG4C 410563 sc-eQTL 4.09e-01 -0.0562 0.0679 0.342 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -399026 sc-eQTL 6.49e-01 0.0439 0.0961 0.342 B_Naive LOneK1K
ENSG00000162607 USP1 758398 sc-eQTL 9.25e-01 0.00774 0.0826 0.342 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -328677 sc-eQTL 5.30e-02 0.186 0.0958 0.342 B_Naive LOneK1K
ENSG00000079739 PGM1 -398716 sc-eQTL 7.84e-01 0.0239 0.0873 0.342 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -172880 sc-eQTL 9.13e-01 0.00929 0.0846 0.342 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 506309 sc-eQTL 8.03e-01 0.0213 0.0852 0.342 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 410563 sc-eQTL 4.39e-01 -0.0455 0.0588 0.342 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -399026 sc-eQTL 2.40e-01 -0.102 0.0868 0.342 CD14_Mono LOneK1K
ENSG00000162607 USP1 758398 sc-eQTL 3.87e-01 0.0644 0.0743 0.342 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 999846 sc-eQTL 9.94e-01 0.000653 0.0807 0.342 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -398716 sc-eQTL 9.76e-01 -0.00254 0.083 0.341 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -172880 sc-eQTL 6.81e-01 -0.0388 0.0943 0.341 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 506309 sc-eQTL 8.13e-01 0.0221 0.0933 0.341 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 410563 sc-eQTL 4.01e-01 -0.0668 0.0794 0.341 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -399026 sc-eQTL 3.21e-01 -0.0916 0.0921 0.341 CD16_Mono LOneK1K
ENSG00000162607 USP1 758398 sc-eQTL 9.31e-01 0.00756 0.0868 0.341 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 999846 sc-eQTL 6.82e-01 0.0243 0.0592 0.341 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -398716 sc-eQTL 5.07e-01 -0.0475 0.0714 0.336 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -172880 sc-eQTL 8.70e-01 0.0141 0.0858 0.336 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 506309 sc-eQTL 3.07e-01 0.0786 0.0767 0.336 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 410563 sc-eQTL 5.03e-01 -0.0515 0.0767 0.336 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -399026 sc-eQTL 5.94e-01 -0.0485 0.0909 0.336 NK_CD56dim LOneK1K
ENSG00000162607 USP1 758398 sc-eQTL 7.18e-01 0.0299 0.0825 0.336 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -328677 sc-eQTL 8.29e-01 -0.0218 0.1 0.336 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -398716 eQTL 0.0153 -0.0447 0.0184 0.0 0.0 0.358

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 PGM1 -398716 1.28e-06 1.19e-06 2.71e-07 1.29e-06 3.73e-07 6.47e-07 1.51e-06 3.81e-07 1.5e-06 6.9e-07 2.07e-06 9.26e-07 2.53e-06 3.24e-07 4.81e-07 9.98e-07 9.36e-07 1.06e-06 5.59e-07 4.4e-07 7.61e-07 1.92e-06 1.11e-06 6.31e-07 2.35e-06 7.8e-07 1e-06 8.64e-07 1.62e-06 1.39e-06 7.79e-07 2.31e-07 2.88e-07 5.59e-07 6.11e-07 6.39e-07 6.55e-07 3.38e-07 4.83e-07 1.68e-07 3.5e-07 1.71e-06 3.34e-07 1.99e-07 3.45e-07 2.74e-07 3.01e-07 2.52e-07 2.79e-07
ENSG00000116652 \N -352387 1.5e-06 1.84e-06 3e-07 1.28e-06 5.1e-07 7.17e-07 1.25e-06 4.33e-07 1.7e-06 7.98e-07 1.84e-06 1.31e-06 2.64e-06 5.79e-07 3.18e-07 1.15e-06 1.06e-06 1.29e-06 6.68e-07 7.4e-07 6.5e-07 1.9e-06 1.55e-06 9.3e-07 2.63e-06 1.11e-06 1.12e-06 1.04e-06 1.68e-06 1.66e-06 8.07e-07 2.49e-07 3.97e-07 9.6e-07 8.71e-07 7.8e-07 8.29e-07 3.9e-07 9.3e-07 3.75e-07 2.88e-07 2.41e-06 4.33e-07 1.95e-07 3.68e-07 2.95e-07 4.27e-07 2.25e-07 2.14e-07